View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2246_low_1 (Length: 539)

Name: NF2246_low_1
Description: NF2246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2246_low_1
NF2246_low_1
[»] chr8 (14 HSPs)
chr8 (18-535)||(15114476-15114994)
chr8 (176-244)||(9548074-9548142)
chr8 (176-277)||(7974778-7974879)
chr8 (475-535)||(15282371-15282431)
chr8 (475-535)||(15462740-15462800)
chr8 (475-529)||(15442577-15442631)
chr8 (478-529)||(15311660-15311711)
chr8 (478-529)||(15492029-15492080)
chr8 (178-263)||(29797946-29798034)
chr8 (176-217)||(8777786-8777827)
chr8 (176-245)||(13209981-13210050)
chr8 (171-244)||(35901060-35901133)
chr8 (184-236)||(8637254-8637306)
chr8 (185-233)||(11196253-11196301)
[»] chr1 (10 HSPs)
chr1 (178-244)||(3694012-3694078)
chr1 (176-243)||(30693352-30693419)
chr1 (176-244)||(5056319-5056387)
chr1 (171-278)||(3739805-3739912)
chr1 (178-217)||(9238256-9238295)
chr1 (171-265)||(38067137-38067232)
chr1 (171-217)||(35310304-35310350)
chr1 (175-233)||(47543615-47543673)
chr1 (180-242)||(6061487-6061549)
chr1 (176-241)||(15343239-15343304)
[»] chr4 (10 HSPs)
chr4 (171-278)||(12276832-12276939)
chr4 (176-263)||(54235228-54235315)
chr4 (177-263)||(4423167-4423253)
chr4 (176-217)||(4479628-4479669)
chr4 (171-278)||(24980616-24980723)
chr4 (171-263)||(30848596-30848690)
chr4 (176-219)||(55762914-55762957)
chr4 (176-213)||(7270190-7270227)
chr4 (177-218)||(33759429-33759470)
chr4 (171-219)||(55827291-55827339)
[»] chr3 (10 HSPs)
chr3 (171-263)||(32221476-32221568)
chr3 (171-253)||(8413802-8413885)
chr3 (171-252)||(31280167-31280248)
chr3 (171-251)||(26914467-26914547)
chr3 (195-263)||(37330963-37331031)
chr3 (171-250)||(29637445-29637524)
chr3 (171-217)||(40905814-40905860)
chr3 (176-272)||(26104235-26104331)
chr3 (187-219)||(46733045-46733077)
chr3 (171-219)||(47783090-47783138)
[»] chr7 (7 HSPs)
chr7 (171-251)||(30794453-30794534)
chr7 (176-243)||(23971211-23971278)
chr7 (176-252)||(18732007-18732083)
chr7 (171-278)||(16866392-16866499)
chr7 (185-263)||(32652412-32652490)
chr7 (176-238)||(44816484-44816546)
chr7 (171-239)||(5026152-5026220)
[»] chr6 (9 HSPs)
chr6 (171-263)||(31323826-31323918)
chr6 (171-244)||(9829903-9829976)
chr6 (171-215)||(28596087-28596131)
chr6 (171-243)||(35003771-35003843)
chr6 (176-267)||(8211800-8211891)
chr6 (175-252)||(2282414-2282491)
chr6 (171-228)||(8437815-8437872)
chr6 (177-219)||(31522658-31522700)
chr6 (178-226)||(1937664-1937712)
[»] chr5 (16 HSPs)
chr5 (171-279)||(39030575-39030683)
chr5 (171-251)||(42324898-42324978)
chr5 (171-278)||(9956489-9956596)
chr5 (171-278)||(34252729-34252836)
chr5 (171-241)||(33498373-33498443)
chr5 (171-263)||(968288-968380)
chr5 (177-217)||(20219514-20219554)
chr5 (171-217)||(14325885-14325932)
chr5 (177-244)||(14646387-14646454)
chr5 (171-242)||(16500569-16500640)
chr5 (171-278)||(33669918-33670025)
chr5 (187-228)||(14973993-14974034)
chr5 (171-252)||(15119309-15119390)
chr5 (179-240)||(19644427-19644488)
chr5 (171-263)||(5727728-5727819)
chr5 (185-253)||(28023939-28024007)
[»] chr2 (18 HSPs)
chr2 (176-252)||(11386326-11386402)
chr2 (171-263)||(16180441-16180533)
chr2 (171-278)||(10459278-10459385)
chr2 (176-276)||(43398831-43398931)
chr2 (176-219)||(33829406-33829449)
chr2 (171-244)||(13453593-13453667)
chr2 (171-260)||(29291073-29291162)
chr2 (171-263)||(944783-944875)
chr2 (181-241)||(33615273-33615333)
chr2 (183-218)||(5388841-5388876)
chr2 (171-218)||(15660702-15660749)
chr2 (171-217)||(2884268-2884314)
chr2 (176-237)||(5713257-5713318)
chr2 (171-252)||(31469083-31469164)
chr2 (184-252)||(4224994-4225062)
chr2 (176-228)||(17437167-17437219)
chr2 (171-263)||(25089921-25090012)
chr2 (175-219)||(41912127-41912171)
[»] scaffold0034 (1 HSPs)
scaffold0034 (177-263)||(94964-95050)
[»] scaffold0072 (1 HSPs)
scaffold0072 (171-269)||(20362-20460)


Alignment Details
Target: chr8 (Bit Score: 470; Significance: 0; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 18 - 535
Target Start/End: Original strand, 15114476 - 15114994
Alignment:
18 attctttcacttgaaactttaaatgtggtaacgggtaagcaaaagaagctttagtataacannnnnnngccactttgtaatacacgattaggatttatct 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||| |    
15114476 attctttcacttgaaactttaaatgtggtaacgggtaagcaaaagaagctttagtataacatttttttgccactttgtaatacacgattaggatttatgt 15114575  T
118 aagtaaaatattcatattttattgaaaattattttgcgaacacctttactctctaagaaaaaattggtcaacaaaaattaatatatttgattcaaaattt 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
15114576 aagtaaaatattcatattttattgaaaattattttgcgaacacctttactctctaagaaaaaattggtcaacaaaaattaatgtatttgattcaaaattt 15114675  T
218 gttctaaatacgtcaatttatgtt-gaccaattttttcctacatttttgaatggagggagtaacttataagcaataatctatttaagttgttttgatgtc 316  Q
    |||||||||||||||||||||||| || |||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
15114676 gttctaaatacgtcaatttatgtttgatcaattttttcttacatttttggatggagggagtaacttataagcaataatctatttaagttgttttgatgtc 15114775  T
317 atagaagataaaataaaattactacaagttaagatatatcttttctcaaccttttacttttcttgtaacacatgatgatgatgattatcgccaattttgg 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
15114776 atagaagataaaataaaattactacaagttaagatatatcttttctcaaccttttacttttcttgtaacacatgatgatgatgattatcgccaattttgg 15114875  T
417 tgattaacatgaattgtactgtttattcgattttatttaccacatgaaatttataacaatctttattgatttattttccaggtaaatatcatgtcatgga 516  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
15114876 tgattaacatgaattgtactgtttattcgattttatttaccacatgaaatttataacaatctttattgatttattttccaggtaaatatcatgtcatgga 15114975  T
517 cttgtgtcctttgctactc 535  Q
    |||||||||||||||||||    
15114976 cttgtgtcctttgctactc 15114994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 176 - 244
Target Start/End: Complemental strand, 9548142 - 9548074
Alignment:
176 aaaaattggtcaacaaaaattaatatatttgattcaaaatttgttctaaatacgtcaatttatgttgac 244  Q
    |||||||| ||||||||||||| |||||||| |||||||||||| |||||||| |||| ||||||||||    
9548142 aaaaattgttcaacaaaaattattatatttggttcaaaatttgtactaaatacatcaacttatgttgac 9548074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 176 - 277
Target Start/End: Complemental strand, 7974879 - 7974778
Alignment:
176 aaaaattggtcaacaaaaattaatatatttgattcaaaatttgttctaaatacgtcaatttatgttgaccaattttttcctacatttttgaatggaggga 275  Q
    ||||||||||||| |||| ||||| |||||   ||||||||||| | ||||||||||||||||||||||| ||| |||  || ||||||| | |||||||    
7974879 aaaaattggtcaataaaagttaatgtatttttgtcaaaatttgtaccaaatacgtcaatttatgttgacccattcttttttatatttttggaaggaggga 7974780  T
276 gt 277  Q
    ||    
7974779 gt 7974778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 475 - 535
Target Start/End: Complemental strand, 15282431 - 15282371
Alignment:
475 atctttattgatttattttccaggtaaatatcatgtcatggacttgtgtcctttgctactc 535  Q
    ||||||||||||||||||| ||| |||| |||||||||||||||||||| |||||| ||||    
15282431 atctttattgatttattttgcagataaacatcatgtcatggacttgtgttctttgcaactc 15282371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 475 - 535
Target Start/End: Complemental strand, 15462800 - 15462740
Alignment:
475 atctttattgatttattttccaggtaaatatcatgtcatggacttgtgtcctttgctactc 535  Q
    ||||||||||||||||||| ||| |||| |||||||||||||||||||| |||||| ||||    
15462800 atctttattgatttattttgcagataaacatcatgtcatggacttgtgttctttgcaactc 15462740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 475 - 529
Target Start/End: Complemental strand, 15442631 - 15442577
Alignment:
475 atctttattgatttattttccaggtaaatatcatgtcatggacttgtgtcctttg 529  Q
    ||||||||||||||||||| |||  ||| ||||||||||||||||||||||||||    
15442631 atctttattgatttattttgcagaaaaacatcatgtcatggacttgtgtcctttg 15442577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 478 - 529
Target Start/End: Complemental strand, 15311711 - 15311660
Alignment:
478 tttattgatttattttccaggtaaatatcatgtcatggacttgtgtcctttg 529  Q
    |||||||||||||||| |||  |||||||||||| ||||||||||| |||||    
15311711 tttattgatttattttgcagaaaaatatcatgtcgtggacttgtgttctttg 15311660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 478 - 529
Target Start/End: Complemental strand, 15492080 - 15492029
Alignment:
478 tttattgatttattttccaggtaaatatcatgtcatggacttgtgtcctttg 529  Q
    |||||||||||||||| |||  |||||||||||| ||||||||||| |||||    
15492080 tttattgatttattttgcagaaaaatatcatgtcgtggacttgtgttctttg 15492029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 178 - 263
Target Start/End: Complemental strand, 29798034 - 29797946
Alignment:
178 aaattggtcaacaaaaattaatatat---ttgattcaaaatttgttctaaatacgtcaatttatgttgaccaattttttcctacatttt 263  Q
    |||||||||||||||||||||| |||   ||| |||||||||||| | |||||| | |||||||||| ||  |||||| | ||||||||    
29798034 aaattggtcaacaaaaattaatgtatttgttggttcaaaatttgtaccaaatacataaatttatgttaactcatttttgcttacatttt 29797946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 176 - 217
Target Start/End: Original strand, 8777786 - 8777827
Alignment:
176 aaaaattggtcaacaaaaattaatatatttgattcaaaattt 217  Q
    |||||||| ||||||||| |||||||||||| ||||||||||    
8777786 aaaaattgatcaacaaaagttaatatatttggttcaaaattt 8777827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 176 - 245
Target Start/End: Original strand, 13209981 - 13210050
Alignment:
176 aaaaattggtcaacaaaaattaatatatttgattcaaaatttgttctaaatacgtcaatttatgttgacc 245  Q
    |||||||| ||||||||| ||||| |||||| ||||||||||||   | |||| |||| |||||||||||    
13209981 aaaaattgatcaacaaaagttaatgtatttggttcaaaatttgtatcagatacatcaacttatgttgacc 13210050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 171 - 244
Target Start/End: Complemental strand, 35901133 - 35901060
Alignment:
171 taagaaaaaattggtcaacaaaaattaatatatttgattcaaaatttgttctaaatacgtcaatttatgttgac 244  Q
    |||| |||||| ||||||||||| ||||| |||| |  ||||||||||| |||| ||| |||| ||||||||||    
35901133 taagcaaaaataggtcaacaaaagttaatgtattgggctcaaaatttgtactaattacatcaacttatgttgac 35901060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 184 - 236
Target Start/End: Original strand, 8637254 - 8637306
Alignment:
184 gtcaacaaaaattaatatatttgattcaaaatttgttctaaatacgtcaattt 236  Q
    ||||| ||||||| ||||||||| ||||||||||| || |||||| |||||||    
8637254 gtcaaaaaaaattgatatatttggttcaaaatttggtccaaatacatcaattt 8637306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 185 - 233
Target Start/End: Complemental strand, 11196301 - 11196253
Alignment:
185 tcaacaaaaattaatatatttgattcaaaatttgttctaaatacgtcaa 233  Q
    ||||||||||||||| ||||| |||||||||||||  ||||||| ||||    
11196301 tcaacaaaaattaatgtatttaattcaaaatttgtattaaatacatcaa 11196253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 6e-20; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 178 - 244
Target Start/End: Complemental strand, 3694078 - 3694012
Alignment:
178 aaattggtcaacaaaaattaatatatttgattcaaaatttgttctaaatacgtcaatttatgttgac 244  Q
    |||||||||||||||||||||| |||||||||||||||||||  ||||||| |||||||||||||||    
3694078 aaattggtcaacaaaaattaatgtatttgattcaaaatttgtattaaatacatcaatttatgttgac 3694012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 176 - 243
Target Start/End: Original strand, 30693352 - 30693419
Alignment:
176 aaaaattggtcaacaaaaattaatatatttgattcaaaatttgttctaaatacgtcaatttatgttga 243  Q
    |||||||| ||||||||||||||| ||||||||||||||||||| | |||||| |||  |||||||||    
30693352 aaaaattgatcaacaaaaattaatgtatttgattcaaaatttgtaccaaatacatcatattatgttga 30693419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 176 - 244
Target Start/End: Complemental strand, 5056387 - 5056319
Alignment:
176 aaaaattggtcaacaaaaattaatatatttgattcaaaatttgttctaaatacgtcaatttatgttgac 244  Q
    ||||||||||||| |||||||||  |||||||||||||||||||   |||||| |||| ||||||||||    
5056387 aaaaattggtcaataaaaattaacgtatttgattcaaaatttgtatcaaatacatcaacttatgttgac 5056319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 171 - 278
Target Start/End: Complemental strand, 3739912 - 3739805
Alignment:
171 taagaaaaaattggtcaacaaaaattaatatatttgattcaaaatttgttctaaatacgtcaatttatgttgaccaattttttcctacatttttgaatgg 270  Q
    |||| |||||||||||||||||| ||||| |||||| || ||||||||| | |||||| | || ||  |||||||||||||| | || ||||| | | ||    
3739912 taagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaactttcgttgaccaatttttgcttatattttgggacgg 3739813  T
271 agggagta 278  Q
    ||||||||    
3739812 agggagta 3739805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 178 - 217
Target Start/End: Complemental strand, 9238295 - 9238256
Alignment:
178 aaattggtcaacaaaaattaatatatttgattcaaaattt 217  Q
    |||||| |||||||||||||||||||||||||||||||||    
9238295 aaattgatcaacaaaaattaatatatttgattcaaaattt 9238256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 171 - 265
Target Start/End: Complemental strand, 38067232 - 38067137
Alignment:
171 taagaaaaaattggtcaacaaaaa-ttaatatatttgattcaaaatttgttctaaatacgtcaatttatgttgaccaattttttcctacatttttg 265  Q
    |||| ||||||||||||| ||||| |||| ||| |||||||||||||| | |||||||| |||||||||||  ||  |||| ||| ||||||||||    
38067232 taaggaaaaattggtcaataaaaaattaacataattgattcaaaatttatactaaatacatcaatttatgtccactcatttcttcttacatttttg 38067137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 171 - 217
Target Start/End: Complemental strand, 35310350 - 35310304
Alignment:
171 taagaaaaaattggtcaacaaaaattaatatatttgattcaaaattt 217  Q
    |||| |||||||||||||||||||||||| ||||||||| |||||||    
35310350 taagtaaaaattggtcaacaaaaattaatgtatttgatttaaaattt 35310304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 175 - 233
Target Start/End: Original strand, 47543615 - 47543673
Alignment:
175 aaaaaattggtcaacaaaaattaatatatttgattcaaaatttgttctaaatacgtcaa 233  Q
    |||||||||||||||||||||||||  ||||| |||||||||||| | |||||| ||||    
47543615 aaaaaattggtcaacaaaaattaatgaatttggttcaaaatttgtaccaaatacatcaa 47543673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 180 - 242
Target Start/End: Complemental strand, 6061549 - 6061487
Alignment:
180 attggtcaacaaaaattaatatatttgattcaaaatttgttctaaatacgtcaatttatgttg 242  Q
    |||||||||||||||||||| |||||| || ||||||||| ||| |||| | || ||||||||    
6061549 attggtcaacaaaaattaatgtatttgttttaaaatttgtactagatacattaacttatgttg 6061487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 176 - 241
Target Start/End: Original strand, 15343239 - 15343304
Alignment:
176 aaaaattggtcaacaaaaattaatatatttgattcaaaatttgttctaaatacgtcaatttatgtt 241  Q
    |||||||||||||||||| | |||| |||||||| |||| ||||  ||||||| |||| |||||||    
15343239 aaaaattggtcaacaaaagtcaataaatttgattaaaaaattgtattaaatacatcaacttatgtt 15343304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 171 - 278
Target Start/End: Original strand, 12276832 - 12276939
Alignment:
171 taagaaaaaattggtcaacaaaaattaatatatttgattcaaaatttgttctaaatacgtcaatttatgttgaccaattttttcctacatttttgaatgg 270  Q
    |||| ||| |||||||| ||||| ||||| ||||||||||||||||| | |||||||| |||| ||||||||||| |||||| | || ||||| ||||||    
12276832 taagtaaagattggtcagcaaaagttaatgtatttgattcaaaatttatactaaatacatcaacttatgttgacctatttttgcttatattttggaatgg 12276931  T
271 agggagta 278  Q
    | ||||||    
12276932 aaggagta 12276939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 176 - 263
Target Start/End: Complemental strand, 54235315 - 54235228
Alignment:
176 aaaaattggtcaacaaaaattaatatatttgattcaaaatttgttctaaatacgtcaatttatgttgaccaattttttcctacatttt 263  Q
    |||||||| ||||||||| ||||| |||||| |||||||||||| |||||||| ||||||||| |||||  |||||| | ||||||||    
54235315 aaaaattgctcaacaaaagttaatgtatttggttcaaaatttgtactaaatacatcaatttatattgactcatttttgcttacatttt 54235228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 177 - 263
Target Start/End: Original strand, 4423167 - 4423253
Alignment:
177 aaaattggtcaacaaaaattaatatatttgattcaaaatttgttctaaatacgtcaatttatgttgaccaattttttcctacatttt 263  Q
    ||||||| |||| |||||||||||||||||||||||||||||| | |||||| |||| |||| |||| | |||||| | ||||||||    
4423167 aaaattgatcaataaaaattaatatatttgattcaaaatttgtaccaaatacatcaacttatattgatccatttttgcttacatttt 4423253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 176 - 217
Target Start/End: Complemental strand, 4479669 - 4479628
Alignment:
176 aaaaattggtcaacaaaaattaatatatttgattcaaaattt 217  Q
    |||||||| |||||||||||||||||||||||||||||||||    
4479669 aaaaattgatcaacaaaaattaatatatttgattcaaaattt 4479628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 171 - 278
Target Start/End: Complemental strand, 24980723 - 24980616
Alignment:
171 taagaaaaaattggtcaacaaaaattaatatatttgattcaaaatttgttctaaatacgtcaatttatgttgaccaattttttcctacatttttgaatgg 270  Q
    |||| ||||||| |||||||||||||||| |||||  | ||||||||||   | |||| |||| ||||||||| | |||||| | |||||||| ||| ||    
24980723 taagcaaaaatttgtcaacaaaaattaatgtattttgtacaaaatttgtgtcagatacatcaacttatgttgatccatttttacttacattttagaacgg 24980624  T
271 agggagta 278  Q
    ||||||||    
24980623 agggagta 24980616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 171 - 263
Target Start/End: Complemental strand, 30848690 - 30848596
Alignment:
171 taagaaaaaattggtcaacaaaaattaatatatttgattcaaaatttgttc--taaatacgtcaatttatgttgaccaattttttcctacatttt 263  Q
    |||| |||||||||||||||||||||||| |||||  |||||||||||| |  || |||| |||| ||||||||| | |||||| | ||||||||    
30848690 taagcaaaaattggtcaacaaaaattaatgtattttgttcaaaatttgtacattagatacatcaacttatgttgatccatttttgcttacatttt 30848596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 176 - 219
Target Start/End: Complemental strand, 55762957 - 55762914
Alignment:
176 aaaaattggtcaacaaaaattaatatatttgattcaaaatttgt 219  Q
    |||||||||||||||||| ||||||||||||||| |||||||||    
55762957 aaaaattggtcaacaaaagttaatatatttgattaaaaatttgt 55762914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 176 - 213
Target Start/End: Original strand, 7270190 - 7270227
Alignment:
176 aaaaattggtcaacaaaaattaatatatttgattcaaa 213  Q
    |||||||| |||| ||||||||||||||||||||||||    
7270190 aaaaattgatcaataaaaattaatatatttgattcaaa 7270227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 177 - 218
Target Start/End: Complemental strand, 33759470 - 33759429
Alignment:
177 aaaattggtcaacaaaaattaatatatttgattcaaaatttg 218  Q
    ||||||||||||||||||||||| |||||  |||||||||||    
33759470 aaaattggtcaacaaaaattaatgtatttagttcaaaatttg 33759429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 171 - 219
Target Start/End: Complemental strand, 55827339 - 55827291
Alignment:
171 taagaaaaaattggtcaacaaaaattaatatatttgattcaaaatttgt 219  Q
    |||| |||||||||||||||||| |||||||||||| || ||| |||||    
55827339 taagcaaaaattggtcaacaaaagttaatatatttggttaaaattttgt 55827291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 171 - 263
Target Start/End: Complemental strand, 32221568 - 32221476
Alignment:
171 taagaaaaaattggtcaacaaaaattaatatatttgattcaaaatttgttctaaatacgtcaatttatgttgaccaattttttcctacatttt 263  Q
    |||| ||||||| |||||||||| ||||| |||||| |||||||||||| | |||||| |||||||||| ||| |||||||| | ||||||||    
32221568 taagcaaaaattagtcaacaaaagttaatgtatttggttcaaaatttgtaccaaatacatcaatttatgctgatcaatttttgcttacatttt 32221476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 171 - 253
Target Start/End: Complemental strand, 8413885 - 8413802
Alignment:
171 taagaaaaaattggtc-aacaaaaattaatatatttgattcaaaatttgttctaaatacgtcaatttatgttgaccaatttttt 253  Q
    |||| |||||||| || |||||||||| ||| |||| |||||||||||||   |||||||||||||||| ||||||||||||||    
8413885 taagcaaaaattgatctaacaaaaatttatacatttaattcaaaatttgtatgaaatacgtcaatttatattgaccaatttttt 8413802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 171 - 252
Target Start/End: Original strand, 31280167 - 31280248
Alignment:
171 taagaaaaaattggtcaacaaaaattaatatatttgattcaaaatttgttctaaatacgtcaatttatgttgaccaattttt 252  Q
    |||| |||||||| ||||||||| ||||| |||||| |||||||||||| | | |||| | |||||||||||| | ||||||    
31280167 taagtaaaaattgatcaacaaaatttaatgtatttggttcaaaatttgtaccatatacattaatttatgttgatccattttt 31280248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 171 - 251
Target Start/End: Complemental strand, 26914547 - 26914467
Alignment:
171 taagaaaaaattggtcaacaaaaattaatatatttgattcaaaatttgttctaaatacgtcaatttatgttgaccaatttt 251  Q
    |||| |||||||| ||||||||||||||| ||| || |||||||||| | |||||||| |||| ||| |||| ||| ||||    
26914547 taagcaaaaattgatcaacaaaaattaatgtatgtggttcaaaatttatactaaatacatcaacttaagttgtccattttt 26914467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 195 - 263
Target Start/End: Original strand, 37330963 - 37331031
Alignment:
195 ttaatatatttgattcaaaatttgttctaaatacgtcaatttatgttgaccaattttttcctacatttt 263  Q
    ||||| ||| || |||||||||||| ||| ||||||||||||||||| ||| |||||| | ||||||||    
37330963 ttaatgtatatggttcaaaatttgtactagatacgtcaatttatgttaacccatttttgcttacatttt 37331031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 171 - 250
Target Start/End: Original strand, 29637445 - 29637524
Alignment:
171 taagaaaaaattggtcaacaaaaattaatatatttgattcaaaatttgttctaaatacgtcaatttatgttgaccaattt 250  Q
    |||||||||||  ||||||| ||||||||||||||||| |||| ||||  | ||||||   ||||||||||||| |||||    
29637445 taagaaaaaataagtcaacataaattaatatatttgatacaaattttgaaccaaatactgtaatttatgttgactaattt 29637524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 171 - 217
Target Start/End: Original strand, 40905814 - 40905860
Alignment:
171 taagaaaaaattggtcaacaaaaattaatatatttgattcaaaattt 217  Q
    |||| |||||||||||||||||| ||||| |||||| ||||||||||    
40905814 taagcaaaaattggtcaacaaaagttaatttatttggttcaaaattt 40905860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 176 - 272
Target Start/End: Original strand, 26104235 - 26104331
Alignment:
176 aaaaattggtcaacaaaaattaatatatttgattcaaaatttgttctaaatacgtcaatttatgttgaccaattttttcctacatttttgaatggag 272  Q
    |||||||||| |||||||| |||| |||||  ||||||||||||   ||| |  |||||||||||||||  |||||| | |||||||| | ||||||    
26104235 aaaaattggttaacaaaaactaatgtatttagttcaaaatttgtatcaaacaaatcaatttatgttgactcatttttgcttacattttaggatggag 26104331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 187 - 219
Target Start/End: Original strand, 46733045 - 46733077
Alignment:
187 aacaaaaattaatatatttgattcaaaatttgt 219  Q
    ||||||||||||| |||||||||||||||||||    
46733045 aacaaaaattaatgtatttgattcaaaatttgt 46733077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 171 - 219
Target Start/End: Original strand, 47783090 - 47783138
Alignment:
171 taagaaaaaattggtcaacaaaaattaatatatttgattcaaaatttgt 219  Q
    |||| ||||||||||||| |||| ||||| |||||| ||||||||||||    
47783090 taagtaaaaattggtcaaaaaaagttaatgtatttggttcaaaatttgt 47783138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 171 - 251
Target Start/End: Original strand, 30794453 - 30794534
Alignment:
171 taagaaaaaattggtcaacaaaaattaatatatttgattcaaaatttgttctaaatacgtcaatttatgttga-ccaatttt 251  Q
    |||| |||| ||||||||||||| ||||||||||||||||||||||||| | |||||| |  ||||||||||| ||||||||    
30794453 taagtaaaatttggtcaacaaaatttaatatatttgattcaaaatttgtaccaaatacattcatttatgttgatccaatttt 30794534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 176 - 243
Target Start/End: Complemental strand, 23971278 - 23971211
Alignment:
176 aaaaattggtcaacaaaaattaatatatttgattcaaaatttgttctaaatacgtcaatttatgttga 243  Q
    |||||||||||||||||||| |||||||||  |||||||||||| | |||||| |||| |||| ||||    
23971278 aaaaattggtcaacaaaaataaatatatttagttcaaaatttgtaccaaatacatcaacttatattga 23971211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 176 - 252
Target Start/End: Complemental strand, 18732083 - 18732007
Alignment:
176 aaaaattggtcaacaaaaattaatatatttgattcaaaatttgttctaaatacgtcaatttatgttgaccaattttt 252  Q
    ||||||||||||| |||| ||||| |||||| |||||||||| | | | |||| |||||||||||||| | ||||||    
18732083 aaaaattggtcaataaaagttaatgtatttggttcaaaatttataccagatacatcaatttatgttgatccattttt 18732007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 171 - 278
Target Start/End: Complemental strand, 16866499 - 16866392
Alignment:
171 taagaaaaaattggtcaacaaaaattaatatatttgattcaaaatttgttctaaatacgtcaatttatgttgaccaattttttcctacatttttgaatgg 270  Q
    |||| |||||||||||||||||| ||||| |||||| || ||||||||| |  ||||| | || || | |||| |||||||| | || ||||| | ||||    
16866499 taagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtacctaatacattaacttttattgatcaatttttgcttatattttgggatgg 16866400  T
271 agggagta 278  Q
    ||||||||    
16866399 agggagta 16866392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 185 - 263
Target Start/End: Complemental strand, 32652490 - 32652412
Alignment:
185 tcaacaaaaattaatatatttgattcaaaatttgttctaaatacgtcaatttatgttgaccaattttttcctacatttt 263  Q
    |||| |||||||||| |||||| |||||| ||||| | ||||||  ||||||||||||||  |||||| | ||||||||    
32652490 tcaataaaaattaatgtatttggttcaaagtttgtaccaaatacaccaatttatgttgacttatttttacttacatttt 32652412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 176 - 238
Target Start/End: Original strand, 44816484 - 44816546
Alignment:
176 aaaaattggtcaacaaaaattaatatatttgattcaaaatttgttctaaatacgtcaatttat 238  Q
    ||||||||| |||||||| ||||| |||||| |||||||||||| | |||||| ||| |||||    
44816484 aaaaattggccaacaaaagttaatgtatttggttcaaaatttgtaccaaatacatcagtttat 44816546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 171 - 239
Target Start/End: Original strand, 5026152 - 5026220
Alignment:
171 taagaaaaaattggtcaacaaaaattaatatatttgattcaaaatttgttctaaatacgtcaatttatg 239  Q
    |||| |||||||||| ||||||| |||||||||||  | |||||||||| | |||||| |||| |||||    
5026152 taagcaaaaattggttaacaaaagttaatatatttagtccaaaatttgtaccaaatacatcaacttatg 5026220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 171 - 263
Target Start/End: Original strand, 31323826 - 31323918
Alignment:
171 taagaaaaaattggtcaacaaaaattaatatatttgattcaaaatttgttctaaatacgtcaatttatgttgaccaattttttcctacatttt 263  Q
    |||| |||||||||||||||||| ||||| |||||  |||||||||||| | | |||| |||| ||||||||||| |||||| | ||||||||    
31323826 taagcaaaaattggtcaacaaaagttaatgtattttgttcaaaatttgtaccagatacatcaacttatgttgacctatttttgcttacatttt 31323918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 171 - 244
Target Start/End: Original strand, 9829903 - 9829976
Alignment:
171 taagaaaaaattggtcaacaaaaattaatatatttgattcaaaatttgttctaaatacgtcaatttatgttgac 244  Q
    |||| ||||||| |||||||||||||||| |||||  || ||||||||| | |||||| |||||||||||||||    
9829903 taagtaaaaattagtcaacaaaaattaatgtattttgtttaaaatttgtaccaaatacatcaatttatgttgac 9829976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 171 - 215
Target Start/End: Original strand, 28596087 - 28596131
Alignment:
171 taagaaaaaattggtcaacaaaaattaatatatttgattcaaaat 215  Q
    |||| ||||||||||||||||||||||||||||||| ||||||||    
28596087 taagtaaaaattggtcaacaaaaattaatatatttggttcaaaat 28596131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 171 - 243
Target Start/End: Original strand, 35003771 - 35003843
Alignment:
171 taagaaaaaattggtcaacaaaaattaatatatttgattcaaaatttgttctaaatacgtcaatttatgttga 243  Q
    |||| |||||||||| || |||||||||| ||||||||||||||||||| | |||||  |||| |||||||||    
35003771 taagtaaaaattggttaataaaaattaatgtatttgattcaaaatttgtacaaaatatatcaacttatgttga 35003843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 176 - 267
Target Start/End: Original strand, 8211800 - 8211891
Alignment:
176 aaaaattggtcaacaaaaattaatatatttgattcaaaatttgttctaaatacgtcaatttatgttgaccaattttttcctacatttttgaa 267  Q
    |||||||| |||| |||| |||||||||||| | | |||||||| |||||||| | |||||||||||| | |||||| | || |||||||||    
8211800 aaaaattgatcaataaaatttaatatatttggtccgaaatttgtactaaatacattaatttatgttgatctatttttacttatatttttgaa 8211891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 175 - 252
Target Start/End: Original strand, 2282414 - 2282491
Alignment:
175 aaaaaattggtcaacaaaaattaatatatttgattcaaaatttgttctaaatacgtcaatttatgttgaccaattttt 252  Q
    ||||||||||||||||||| ||||| |||||  ||||||| ||||   |||||| |||||||||||| || |||||||    
2282414 aaaaaattggtcaacaaaagttaatgtatttagttcaaaaattgtatcaaatacatcaatttatgttaactaattttt 2282491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 171 - 228
Target Start/End: Complemental strand, 8437872 - 8437815
Alignment:
171 taagaaaaaattggtcaacaaaaattaatatatttgattcaaaatttgttctaaatac 228  Q
    |||| |||| || |||||||||||||||| ||||||||||||||||||| | ||||||    
8437872 taagtaaaatttagtcaacaaaaattaatgtatttgattcaaaatttgtaccaaatac 8437815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 177 - 219
Target Start/End: Complemental strand, 31522700 - 31522658
Alignment:
177 aaaattggtcaacaaaaattaatatatttgattcaaaatttgt 219  Q
    ||||||||||||||||| |||||  ||||||||||||||||||    
31522700 aaaattggtcaacaaaagttaatgcatttgattcaaaatttgt 31522658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 178 - 226
Target Start/End: Original strand, 1937664 - 1937712
Alignment:
178 aaattggtcaacaaaaattaatatatttgattcaaaatttgttctaaat 226  Q
    ||||||||| ||||||||| |||||||||||| ||||||| | ||||||    
1937664 aaattggtcgacaaaaatttatatatttgatttaaaatttatactaaat 1937712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 171 - 279
Target Start/End: Original strand, 39030575 - 39030683
Alignment:
171 taagaaaaaattggtcaacaaaaattaatatatttgattcaaaatttgttctaaatacgtcaatttatgttgaccaattttttcctacatttttgaatgg 270  Q
    |||| |||||||||||||||||| ||||| |||||| || ||||||||| | |||||| | || || ||||||| ||||||| | || ||||| | ||||    
39030575 taagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaacttttgttgactaatttttgcttatattttgggatgg 39030674  T
271 agggagtaa 279  Q
    |||||||||    
39030675 agggagtaa 39030683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 171 - 251
Target Start/End: Complemental strand, 42324978 - 42324898
Alignment:
171 taagaaaaaattggtcaacaaaaattaatatatttgattcaaaatttgttctaaatacgtcaatttatgttgaccaatttt 251  Q
    |||| |||||||||||||||||| ||||| |||||| || ||||||| | | |||||| ||||||||| ||||||||||||    
42324978 taagtaaaaattggtcaacaaaagttaatgtatttgttttaaaatttataccaaatacatcaatttatattgaccaatttt 42324898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 171 - 278
Target Start/End: Complemental strand, 9956596 - 9956489
Alignment:
171 taagaaaaaattggtcaacaaaaattaatatatttgattcaaaatttgttctaaatacgtcaatttatgttgaccaattttttcctacatttttgaatgg 270  Q
    |||| |||||||||| ||||||| ||||| ||||||||||||||||| |   | |||| ||||  |||||||||| |||||| | |||||||| | ||||    
9956596 taagtaaaaattggttaacaaaagttaatgtatttgattcaaaatttataacagatacatcaacatatgttgacccatttttacttacattttgggatgg 9956497  T
271 agggagta 278  Q
    | ||||||    
9956496 atggagta 9956489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 171 - 278
Target Start/End: Original strand, 34252729 - 34252836
Alignment:
171 taagaaaaaattggtcaacaaaaattaatatatttgattcaaaatttgttctaaatacgtcaatttatgttgaccaattttttcctacatttttgaatgg 270  Q
    |||| |||||||||||||||||| ||||| |||||| |||||||||| | | | || | |||| ||||||| ||| |||||| | |||||||| | | ||    
34252729 taagcaaaaattggtcaacaaaagttaatgtatttggttcaaaatttatgccacattcatcaacttatgttaacccatttttgcttacattttgggacgg 34252828  T
271 agggagta 278  Q
    ||||||||    
34252829 agggagta 34252836  T

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Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 171 - 241
Target Start/End: Original strand, 33498373 - 33498443
Alignment:
171 taagaaaaaattggtcaacaaaaattaatatatttgattcaaaatttgttctaaatacgtcaatttatgtt 241  Q
    |||| |||| |||| |||||||||| |||||||||| |||||||||||| | |||||| |||| |||||||    
33498373 taagcaaaagttggccaacaaaaatcaatatatttggttcaaaatttgtacaaaatacatcaacttatgtt 33498443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 171 - 263
Target Start/End: Complemental strand, 968380 - 968288
Alignment:
171 taagaaaaaattggtcaacaaaaattaatatatttgattcaaaatttgttctaaatacgtcaatttatgttgaccaattttttcctacatttt 263  Q
    |||| ||||||  ||||||||||||||||||||||  |||||||||||| | |||||| |||| |||  |||||| | |||| | ||||||||    
968380 taagtaaaaatgagtcaacaaaaattaatatatttagttcaaaatttgtaccaaatacatcaacttaaattgacccacttttacttacatttt 968288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 177 - 217
Target Start/End: Original strand, 20219514 - 20219554
Alignment:
177 aaaattggtcaacaaaaattaatatatttgattcaaaattt 217  Q
    ||||||| ||||||||| |||||||||||||||||||||||    
20219514 aaaattgatcaacaaaagttaatatatttgattcaaaattt 20219554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 171 - 217
Target Start/End: Original strand, 14325885 - 14325932
Alignment:
171 taagaaaaaattgg-tcaacaaaaattaatatatttgattcaaaattt 217  Q
    |||||||||||| | ||||||||||||||| |||||||||||||||||    
14325885 taagaaaaaatttgatcaacaaaaattaatgtatttgattcaaaattt 14325932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 177 - 244
Target Start/End: Complemental strand, 14646454 - 14646387
Alignment:
177 aaaattggtcaacaaaaattaatatatttgattcaaaatttgttctaaatacgtcaatttatgttgac 244  Q
    ||||||| | || |||||||||| ||| ||||||||||||||| |||||||| | ||||||| |||||    
14646454 aaaattgataaataaaaattaatgtatatgattcaaaatttgtactaaatacattaatttatattgac 14646387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 171 - 242
Target Start/End: Original strand, 16500569 - 16500640
Alignment:
171 taagaaaaaattggtcaacaaaaattaatatatttgattcaaaatttgttctaaatacgtcaatttatgttg 242  Q
    |||| |||||||| ||||||||||||||| || ||| ||||||||||  || | |||| |||||||||||||    
16500569 taagcaaaaattgttcaacaaaaattaatgtaattggttcaaaatttaatccagatacatcaatttatgttg 16500640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 171 - 278
Target Start/End: Complemental strand, 33670025 - 33669918
Alignment:
171 taagaaaaaattggtcaacaaaaattaatatatttgattcaaaatttgttctaaatacgtcaatttatgttgaccaattttttcctacatttttgaatgg 270  Q
    |||| ||||||||||||| |||| ||||| |||||| || ||||||||| | | ||||   || ||||||||||| |||||| | |||||||| | ||||    
33670025 taagcaaaaattggtcaaaaaaagttaatgtatttggtttaaaatttgtaccagatacactaacttatgttgacccatttttgcttacattttgggatgg 33669926  T
271 agggagta 278  Q
    | ||||||    
33669925 atggagta 33669918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 187 - 228
Target Start/End: Original strand, 14973993 - 14974034
Alignment:
187 aacaaaaattaatatatttgattcaaaatttgttctaaatac 228  Q
    ||||||||||||||||||||||| ||||||||| | ||||||    
14973993 aacaaaaattaatatatttgatttaaaatttgtgccaaatac 14974034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 171 - 252
Target Start/End: Original strand, 15119309 - 15119390
Alignment:
171 taagaaaaaattggtcaacaaaaattaatatatttgattcaaaatttgttctaaatacgtcaatttatgttgaccaattttt 252  Q
    |||| ||||||| ||||| |||| ||||| |||||||||||||||||||  ||||||  | || |||| || ||||||||||    
15119309 taagcaaaaattagtcaataaaacttaatgtatttgattcaaaatttgtattaaatatattaacttatattaaccaattttt 15119390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 179 - 240
Target Start/End: Complemental strand, 19644488 - 19644427
Alignment:
179 aattggtcaacaaaaattaatatatttgattcaaaatttgttctaaatacgtcaatttatgt 240  Q
    ||||| ||||||||||||||  |||||| |||||||||| | |||||||| |||| ||||||    
19644488 aattgatcaacaaaaattaacgtatttggttcaaaatttatactaaatacatcaacttatgt 19644427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 171 - 263
Target Start/End: Original strand, 5727728 - 5727819
Alignment:
171 taagaaaaaattggtcaacaaaaattaatatatttgattcaaaatttgttctaaatacgtcaatttatgttgaccaattttttcctacatttt 263  Q
    |||| ||||||||||||| ||||||||||||| ||| || ||||||||| | | |||| |||| ||||  ||||| |||||| | ||||||||    
5727728 taagtaaaaattggtcaataaaaattaatata-ttggtttaaaatttgtaccagatacatcaacttattgtgacctatttttacttacatttt 5727819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 185 - 253
Target Start/End: Complemental strand, 28024007 - 28023939
Alignment:
185 tcaacaaaaattaatatatttgattcaaaatttgttctaaatacgtcaatttatgttgaccaatttttt 253  Q
    |||| |||| ||||| ||||||||||||||||||| | |||||| | || |||| |||||| |||||||    
28024007 tcaataaaagttaatgtatttgattcaaaatttgtacaaaatacattaacttatattgacctatttttt 28023939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 176 - 252
Target Start/End: Original strand, 11386326 - 11386402
Alignment:
176 aaaaattggtcaacaaaaattaatatatttgattcaaaatttgttctaaatacgtcaatttatgttgaccaattttt 252  Q
    |||||||| ||||||||||||||||||||| |||||||||||||   |||||| |||| ||||||||| ||| ||||    
11386326 aaaaattgatcaacaaaaattaatatatttaattcaaaatttgtatcaaatacatcaacttatgttgatcaaatttt 11386402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 171 - 263
Target Start/End: Complemental strand, 16180533 - 16180441
Alignment:
171 taagaaaaaattggtcaacaaaaattaatatatttgattcaaaatttgttctaaatacgtcaatttatgttgaccaattttttcctacatttt 263  Q
    |||| |||| ||||||||||||| ||||| |||||| |||||||||| |  | ||||| ||||||||||||||| ||||||| | ||||||||    
16180533 taagtaaaatttggtcaacaaaagttaatgtatttggttcaaaatttatatttaatacatcaatttatgttgactaatttttgcttacatttt 16180441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 171 - 278
Target Start/End: Original strand, 10459278 - 10459385
Alignment:
171 taagaaaaaattggtcaacaaaaattaatatatttgattcaaaatttgttctaaatacgtcaatttatgttgaccaattttttcctacatttttgaatgg 270  Q
    |||| |||||||||||||||||| ||||| |||||| ||||||||||||   | || | |||| |||||||||||||| ||| | |||||||| | | ||    
10459278 taagcaaaaattggtcaacaaaagttaatgtatttggttcaaaatttgtatcagatgcatcaacttatgttgaccaatctttgcttacattttgggacgg 10459377  T
271 agggagta 278  Q
    ||||||||    
10459378 agggagta 10459385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 176 - 276
Target Start/End: Complemental strand, 43398931 - 43398831
Alignment:
176 aaaaattggtcaacaaaaattaatatatttgattcaaaatttgttctaaatacgtcaatttatgttgaccaattttttcctacatttttgaatggaggga 275  Q
    ||||||| || ||||||| ||||| |||||| |||||||||||| | |||||| |||| |||| |||||| |||||| | |||||||| |||  ||||||    
43398931 aaaaatttgttaacaaaagttaatgtatttggttcaaaatttgtaccaaatacatcaacttatattgacccatttttacttacattttagaacagaggga 43398832  T
276 g 276  Q
    |    
43398831 g 43398831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 176 - 219
Target Start/End: Original strand, 33829406 - 33829449
Alignment:
176 aaaaattggtcaacaaaaattaatatatttgattcaaaatttgt 219  Q
    ||||||||||||||||||||||||||||||| | ||||||||||    
33829406 aaaaattggtcaacaaaaattaatatatttggtacaaaatttgt 33829449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 171 - 244
Target Start/End: Original strand, 13453593 - 13453667
Alignment:
171 taagaaaaaattggtcaacaaaa-attaatatatttgattcaaaatttgttctaaatacgtcaatttatgttgac 244  Q
    |||| |||||||| ||||||||| |||||||| |||  |||||||||||| |||||| | |||||||||||||||    
13453593 taagcaaaaattgatcaacaaaaaattaatatctttagttcaaaatttgtgctaaatgcatcaatttatgttgac 13453667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 171 - 260
Target Start/End: Complemental strand, 29291162 - 29291073
Alignment:
171 taagaaaaaattggtcaacaaaaattaatatatttgattcaaaatttgttctaaatacgtcaatttatgttgaccaattttttcctacat 260  Q
    |||| ||||||||||||| |||| |||||||||||| |||||||  | | ||| |||| ||||||||||||||   |||||||| |||||    
29291162 taagcaaaaattggtcaataaaagttaatatatttggttcaaaaaatttactagatacatcaatttatgttgattcattttttcttacat 29291073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 171 - 263
Target Start/End: Original strand, 944783 - 944875
Alignment:
171 taagaaaaaattggtcaacaaaaattaatatatttgattcaaaatttgttctaaatacgtcaatttatgttgaccaattttttcctacatttt 263  Q
    |||| |||||| | |||| |||| ||||| |||||  |||||||||||| | |||||| |||| |||||||||| ||||||| | ||||||||    
944783 taagcaaaaatcgatcaataaaagttaatgtatttagttcaaaatttgtaccaaatacatcaacttatgttgactaatttttacttacatttt 944875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 181 - 241
Target Start/End: Original strand, 33615273 - 33615333
Alignment:
181 ttggtcaacaaaaattaatatatttgattcaaaatttgttctaaatacgtcaatttatgtt 241  Q
    |||||||| ||| ||||||||||||||||||||||||||   |||||| |||| |||||||    
33615273 ttggtcaataaatattaatatatttgattcaaaatttgtatcaaatacatcaacttatgtt 33615333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 183 - 218
Target Start/End: Original strand, 5388841 - 5388876
Alignment:
183 ggtcaacaaaaattaatatatttgattcaaaatttg 218  Q
    ||||||||||||||||| ||||||||||||||||||    
5388841 ggtcaacaaaaattaatgtatttgattcaaaatttg 5388876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 171 - 218
Target Start/End: Complemental strand, 15660749 - 15660702
Alignment:
171 taagaaaaaattggtcaacaaaaattaatatatttgattcaaaatttg 218  Q
    |||| |||||||| |||||| |||||||| ||||||||||||||||||    
15660749 taagcaaaaattgatcaacacaaattaatgtatttgattcaaaatttg 15660702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 171 - 217
Target Start/End: Original strand, 2884268 - 2884314
Alignment:
171 taagaaaaaattggtcaacaaaaattaatatatttgattcaaaattt 217  Q
    |||| ||||||| |||||||||||||||| |||||| ||||||||||    
2884268 taagtaaaaatttgtcaacaaaaattaatgtatttggttcaaaattt 2884314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 176 - 237
Target Start/End: Complemental strand, 5713318 - 5713257
Alignment:
176 aaaaattggtcaacaaaaattaatatatttgattcaaaatttgttctaaatacgtcaattta 237  Q
    |||| ||||||||| ||||||||  ||||| |||||||||||||  ||||||| ||||||||    
5713318 aaaatttggtcaaccaaaattaacgtatttaattcaaaatttgtattaaatacatcaattta 5713257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 171 - 252
Target Start/End: Original strand, 31469083 - 31469164
Alignment:
171 taagaaaaaattggtcaacaaaaattaatatatttgattcaaaatttgttctaaatacgtcaatttatgttgaccaattttt 252  Q
    |||| |||||||||||||||||| ||||| |||||| || |||||||||   |||||| | || ||  ||||||||||||||    
31469083 taagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtatcaaatacattaactttcgttgaccaattttt 31469164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 184 - 252
Target Start/End: Complemental strand, 4225062 - 4224994
Alignment:
184 gtcaacaaaaattaatatatttgattcaaaatttgttctaaatacgtcaatttatgttgaccaattttt 252  Q
    |||||||||| |||   ||||||||||||||||| | | | |||| |||||||||||||||||| ||||    
4225062 gtcaacaaaagttatcgtatttgattcaaaatttataccagatacatcaatttatgttgaccaactttt 4224994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 176 - 228
Target Start/End: Complemental strand, 17437219 - 17437167
Alignment:
176 aaaaattggtcaacaaaaattaatatatttgattcaaaatttgttctaaatac 228  Q
    ||||||| |||||||||||||||| |||||  |||||||||||| | ||||||    
17437219 aaaaatttgtcaacaaaaattaatgtatttagttcaaaatttgtaccaaatac 17437167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 171 - 263
Target Start/End: Complemental strand, 25090012 - 25089921
Alignment:
171 taagaaaaaattggtcaacaaaaattaatatatttgattcaaaatttgttctaaatacgtcaatttatgttgaccaattttttcctacatttt 263  Q
    |||| |||||||||| ||||||| || ||||||||| ||||||||||||   ||||||  ||| ||||||| | | |||||||| ||||||||    
25090012 taagcaaaaattggt-aacaaaacttcatatatttgcttcaaaatttgtatcaaatacaacaacttatgttaatccattttttcttacatttt 25089921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 175 - 219
Target Start/End: Complemental strand, 41912171 - 41912127
Alignment:
175 aaaaaattggtcaacaaaaattaatatatttgattcaaaatttgt 219  Q
    ||||||||| ||||||||||||||| ||| || ||||||||||||    
41912171 aaaaaattgttcaacaaaaattaatgtatctggttcaaaatttgt 41912127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 177 - 263
Target Start/End: Original strand, 94964 - 95050
Alignment:
177 aaaattggtcaacaaaaattaatatatttgattcaaaatttgttctaaatacgtcaatttatgttgaccaattttttcctacatttt 263  Q
    ||||||| |||| |||||||||| ||||   |||||||||||| | |||||| |||| |||||||||||||||||||  ||||||||    
94964 aaaattgatcaataaaaattaatgtattatgttcaaaatttgtaccaaatacatcaacttatgttgaccaattttttattacatttt 95050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0072 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 171 - 269
Target Start/End: Complemental strand, 20460 - 20362
Alignment:
171 taagaaaaaattggtcaacaaaaattaatatatttgattcaaaatttgttctaaatacgtcaatttatgttgaccaattttttcctacatttttgaatg 269  Q
    |||| ||||||||||||  |||||||||  ||| || || |||||||||  ||||||| | |||||||||||||  |||||| | |||||||| |||||    
20460 taagcaaaaattggtcagtaaaaattaacgtatgtggtttaaaatttgtattaaatacattaatttatgttgacatatttttacttacattttagaatg 20362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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