View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2246_low_10 (Length: 331)
Name: NF2246_low_10
Description: NF2246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2246_low_10 |
 | |
|
| [»] scaffold0074 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 311; Significance: 1e-175; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 319
Target Start/End: Complemental strand, 828822 - 828504
Alignment:
| Q |
1 |
tcaaatctcttgtaccaacatctgggcgcctgctttagaccatacagagatttggtcaacctgcaaaccaagttttcttttccttgttccttaaatcctt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
828822 |
tcaaatctcttgtaccaacatctgggcgcctgctttagaccgtacagagatttggtcaacctgcaaaccaagttttcttttccttgttccttaaatcctt |
828723 |
T |
|
| Q |
101 |
ccggttggagcatataaatttcttcttcaagttctccatgaagaaaagcagtctttacatccagctgttcaagatgtaaatccaatgcagcacacatcgc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
828722 |
ccggttggagcatataaatttcttcttcaagttctccatgaagaaaagcagtctttacatccagctgttcaagatgtaaatccaatgcagcacacatcgc |
828623 |
T |
|
| Q |
201 |
caacactactctgatagtagtaagtctgacaaccggagaaaatatctcattgaagtcaataccttctttctgagcatatccttttacaaccagtcttgca |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
828622 |
caacactactctgatagtagtaagtctgacaaccggagaaaatatctcattgaagtcaataccttctttctgagcatatccttttacaaccagtcttgca |
828523 |
T |
|
| Q |
301 |
cgataccgttccacttgat |
319 |
Q |
| |
|
|||| |||||||||||||| |
|
|
| T |
828522 |
cgattccgttccacttgat |
828504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 3 - 175
Target Start/End: Original strand, 13841889 - 13842061
Alignment:
| Q |
3 |
aaatctcttgtaccaacatctgggcgcctgctttagaccatacagagatttggtcaacctgcaaaccaagttttcttttccttgttccttaaatccttcc |
102 |
Q |
| |
|
|||| ||||||| |||||| ||| | |||||||| || |||| |||||| |||||||| ||||| |||||||||||||||| ||| || ||| ||| |
|
|
| T |
13841889 |
aaatatcttgtagcaacatatggacacctgctttcagccgtacaaagatttagtcaacctacaaactaagttttcttttccttcttctttggatctttct |
13841988 |
T |
|
| Q |
103 |
ggttggagcatataaatttcttcttcaagttctccatgaagaaaagcagtctttacatccagctgttcaagat |
175 |
Q |
| |
|
||||||||||||||||| |||||||||| ||| ||||||| |||||||||||||||||| || |||||||||| |
|
|
| T |
13841989 |
ggttggagcatataaatgtcttcttcaatttcaccatgaaaaaaagcagtctttacatctagttgttcaagat |
13842061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 236 - 329
Target Start/End: Original strand, 13842065 - 13842158
Alignment:
| Q |
236 |
gagaaaatatctcattgaagtcaataccttctttctgagcatatccttttacaaccagtcttgcacgataccgttccacttgatgatgtccatc |
329 |
Q |
| |
|
||||||||||||||||||| ||||||||| |||||||| ||||||||| |||| || |||||||||||| ||| |||||||| || |||||| |
|
|
| T |
13842065 |
gagaaaatatctcattgaaatcaatacctcttttctgagtatatcctttgacaatcaatcttgcacgatatcgtctcacttgatcatttccatc |
13842158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 120 - 159
Target Start/End: Original strand, 17455350 - 17455389
Alignment:
| Q |
120 |
ttcttcttcaagttctccatgaagaaaagcagtctttaca |
159 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
17455350 |
ttcttcttcaagttctccatgaacaaaagcagtctttaca |
17455389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 307; Significance: 1e-173; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 1 - 319
Target Start/End: Complemental strand, 41721753 - 41721435
Alignment:
| Q |
1 |
tcaaatctcttgtaccaacatctgggcgcctgctttagaccatacagagatttggtcaacctgcaaaccaagttttcttttccttgttccttaaatcctt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41721753 |
tcaaatctcttgtaccaacatctgggcgcctgctttagaccgtacagagatttggtcaacctgcaaaccaagttttcttttccttgttccttaaatcctt |
41721654 |
T |
|
| Q |
101 |
ccggttggagcatataaatttcttcttcaagttctccatgaagaaaagcagtctttacatccagctgttcaagatgtaaatccaatgcagcacacatcgc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
41721653 |
ccggttggagcatataaatttcttcttcaagttctccatgaagaaaagcagtctttacatctagctgttcaagatgtaaatccaacgcagcacacatcgc |
41721554 |
T |
|
| Q |
201 |
caacactactctgatagtagtaagtctgacaaccggagaaaatatctcattgaagtcaataccttctttctgagcatatccttttacaaccagtcttgca |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41721553 |
caacactactctgatagtagtaagtctgacaaccggagaaaatatctcattgaagtcaataccttctttctgagcatatccttttacaaccagtcttgca |
41721454 |
T |
|
| Q |
301 |
cgataccgttccacttgat |
319 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
41721453 |
cgataccgttccacttgat |
41721435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 1 - 319
Target Start/End: Complemental strand, 34355353 - 34355035
Alignment:
| Q |
1 |
tcaaatctcttgtaccaacatctgggcgcctgctttagaccatacagagatttggtcaacctgcaaaccaagttttcttttccttgttccttaaatcctt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
34355353 |
tcaaatctcttgtaccaacatctgggcgcctgctttagaccgtacagagatttggtcaacctgcaaaccaggttttcttttccttgttccttaaatcctt |
34355254 |
T |
|
| Q |
101 |
ccggttggagcatataaatttcttcttcaagttctccatgaagaaaagcagtctttacatccagctgttcaagatgtaaatccaatgcagcacacatcgc |
200 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34355253 |
ccggttggagcatctaaatttcttcttcaagttctccatgaagaaaagcagtctttacatccagctgttcaagatgtaaatccaatgcagcacacatcgc |
34355154 |
T |
|
| Q |
201 |
caacactactctgatagtagtaagtctgacaaccggagaaaatatctcattgaagtcaataccttctttctgagcatatccttttacaaccagtcttgca |
300 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34355153 |
caacactactctgataatagtaagtctgacaaccggagaaaatatctcattgaagtcaataccttctttctgagcatatccttttacaaccagtcttgca |
34355054 |
T |
|
| Q |
301 |
cgataccgttccacttgat |
319 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
34355053 |
cgataccgttccacttgat |
34355035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 307; Significance: 1e-173; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 1 - 319
Target Start/End: Original strand, 48698795 - 48699113
Alignment:
| Q |
1 |
tcaaatctcttgtaccaacatctgggcgcctgctttagaccatacagagatttggtcaacctgcaaaccaagttttcttttccttgttccttaaatcctt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48698795 |
tcaaatctcttgtaccaacatctgggcgcctgctttagaccgtacagagatttggtcaacctgcaaaccaagttttcttttccttgttccttaaatcctt |
48698894 |
T |
|
| Q |
101 |
ccggttggagcatataaatttcttcttcaagttctccatgaagaaaagcagtctttacatccagctgttcaagatgtaaatccaatgcagcacacatcgc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
48698895 |
ccggttggagcatataaatttcttcttcaagttctccatgaagaaaagcagtctttacatctagctgttcaagatgtaaatccaacgcagcacacatcgc |
48698994 |
T |
|
| Q |
201 |
caacactactctgatagtagtaagtctgacaaccggagaaaatatctcattgaagtcaataccttctttctgagcatatccttttacaaccagtcttgca |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48698995 |
caacactactctgatagtagtaagtctgacaaccggagaaaatatctcattgaagtcaataccttctttctgagcatatccttttacaaccagtcttgca |
48699094 |
T |
|
| Q |
301 |
cgataccgttccacttgat |
319 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
48699095 |
cgataccgttccacttgat |
48699113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 1 - 319
Target Start/End: Complemental strand, 42269246 - 42268928
Alignment:
| Q |
1 |
tcaaatctcttgtaccaacatctgggcgcctgctttagaccatacagagatttggtcaacctgcaaaccaagttttcttttccttgttccttaaatcctt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42269246 |
tcaaatctcttgtaccaacatctgggcgcctgctttagaccgtacagagatttggtcaacctgcaaaccaagttttcttttccttgttccttaaatcctt |
42269147 |
T |
|
| Q |
101 |
ccggttggagcatataaatttcttcttcaagttctccatgaagaaaagcagtctttacatccagctgttcaagatgtaaatccaatgcagcacacatcgc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
42269146 |
ccggttggagcatataaatttcttcttcaagttctccatgaagaaaagcagtctttacatctagctgttcaagatgtaaatccaacgcagcacacatcgc |
42269047 |
T |
|
| Q |
201 |
caacactactctgatagtagtaagtctgacaaccggagaaaatatctcattgaagtcaataccttctttctgagcatatccttttacaaccagtcttgca |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
42269046 |
caacactactctgatagtagtaagtctgacaaccggagaaaatatctcattgaagtcaataccttctttctgagcatatccttttacaaccagccttgca |
42268947 |
T |
|
| Q |
301 |
cgataccgttccacttgat |
319 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
42268946 |
cgataccgttccacttgat |
42268928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 319
Target Start/End: Original strand, 30947157 - 30947475
Alignment:
| Q |
1 |
tcaaatctcttgtaccaacatctgggcgcctgctttagaccatacagagatttggtcaacctgcaaaccaagttttcttttccttgttccttaaatcctt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30947157 |
tcaaatctcttgtaccaacatctgggcgcctgctttagaccgtacagagatttggtcaacctgcaaaccaagttttcttttccttgttccttaaatcctt |
30947256 |
T |
|
| Q |
101 |
ccggttggagcatataaatttcttcttcaagttctccatgaagaaaagcagtctttacatccagctgttcaagatgtaaatccaatgcagcacacatcgc |
200 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |
|
|
| T |
30947257 |
ccggttgaagcatataaatttcttcttcaagttctccatgaagaaaagcagtctttacatctagctgttcaagatgtaaatccaatgcagcacacattgc |
30947356 |
T |
|
| Q |
201 |
caacactactctgatagtagtaagtctgacaaccggagaaaatatctcattgaagtcaataccttctttctgagcatatccttttacaaccagtcttgca |
300 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30947357 |
caacactactctaatagtagtaagtctgacaaccggagaaaatatctcattgaagtcaataccttctttctgagcatatccttttacaaccagtcttgca |
30947456 |
T |
|
| Q |
301 |
cgataccgttccacttgat |
319 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
30947457 |
cgataccgttccacttgat |
30947475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 1 - 319
Target Start/End: Complemental strand, 2002226 - 2001902
Alignment:
| Q |
1 |
tcaaatctcttgtaccaacatctgggcgcctgctttagaccatacagagatttggtcaacctgcaaaccaagttttcttttccttgttccttaaatcctt |
100 |
Q |
| |
|
||||||||||||||||||||||| ||||||| ||||||| |||| ||| |||||||||||||||||||||||||| ||||||||||| | ||| |||| |
|
|
| T |
2002226 |
tcaaatctcttgtaccaacatctaggcgcctattttagactgtacatagaattggtcaacctgcaaaccaagttttcctttccttgttcttcaaaacctt |
2002127 |
T |
|
| Q |
101 |
ccggttggagcatataaat------ttcttcttcaagttctccatgaagaaaagcagtctttacatccagctgttcaagatgtaaatccaatgcagcaca |
194 |
Q |
| |
|
| |||||||||||||| || |||||||||||| ||||| |||||||||||||| |||||||| | |||||||||| |||||| || |||||||| |
|
|
| T |
2002126 |
ctggttggagcatatatatatatatttcttcttcaagctctccgtgaagaaaagcagtttttacatctaattgttcaagatataaatcaaacgcagcaca |
2002027 |
T |
|
| Q |
195 |
catcgccaacactactctgatagtagtaagtctgacaaccggagaaaatatctcattgaagtcaataccttctttctgagcatatccttttacaaccagt |
294 |
Q |
| |
|
||| ||||| |||| |||||| ||||| ||||| ||||| || || ||||| |||||||| ||||||| ||||||||||||||| ||||| || |||| | |
|
|
| T |
2002026 |
catagccaaaactattctgatggtagtgagtctaacaactggggagaatatttcattgaaatcaatacattctttctgagcataccctttaaccaccaat |
2001927 |
T |
|
| Q |
295 |
cttgcacgataccgttccacttgat |
319 |
Q |
| |
|
||||||||||| ||||| ||||||| |
|
|
| T |
2001926 |
cttgcacgatatcgttctacttgat |
2001902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 90 - 173
Target Start/End: Original strand, 28608721 - 28608804
Alignment:
| Q |
90 |
cttaaatccttccggttggagcatataaatttcttcttcaagttctccatgaagaaaagcagtctttacatccagctgttcaag |
173 |
Q |
| |
|
|||||||||||| ||||| | ||| || || ||||| || | |||||||||||||| |||||||||||||||| |||||||| |
|
|
| T |
28608721 |
cttaaatccttctggttgaaccatgtagatctcttcatctaaatctccatgaagaaatgcagtctttacatccatttgttcaag |
28608804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 133 - 173
Target Start/End: Complemental strand, 14177111 - 14177071
Alignment:
| Q |
133 |
tctccatgaagaaaagcagtctttacatccagctgttcaag |
173 |
Q |
| |
|
|||||||||||||| |||||||||||||||| |||||||| |
|
|
| T |
14177111 |
tctccatgaagaaatgcagtctttacatccatttgttcaag |
14177071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 307; Significance: 1e-173; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 1 - 319
Target Start/End: Original strand, 5820249 - 5820567
Alignment:
| Q |
1 |
tcaaatctcttgtaccaacatctgggcgcctgctttagaccatacagagatttggtcaacctgcaaaccaagttttcttttccttgttccttaaatcctt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5820249 |
tcaaatctcttgtaccaacatctgggcgcctgctttagaccgtacagagatttggtcaacctgcaaaccaagttttcttttccttgttccttaaatcctt |
5820348 |
T |
|
| Q |
101 |
ccggttggagcatataaatttcttcttcaagttctccatgaagaaaagcagtctttacatccagctgttcaagatgtaaatccaatgcagcacacatcgc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
5820349 |
ccggttggagcatataaatttcttcttcaagttctccatgaagaaaagcagtctttacatctagctgttcaagatgtaaatccaacgcagcacacatcgc |
5820448 |
T |
|
| Q |
201 |
caacactactctgatagtagtaagtctgacaaccggagaaaatatctcattgaagtcaataccttctttctgagcatatccttttacaaccagtcttgca |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5820449 |
caacactactctgatagtagtaagtctgacaaccggagaaaatatctcattgaagtcaataccttctttctgagcatatccttttacaaccagtcttgca |
5820548 |
T |
|
| Q |
301 |
cgataccgttccacttgat |
319 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
5820549 |
cgataccgttccacttgat |
5820567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 1 - 319
Target Start/End: Complemental strand, 42588291 - 42587973
Alignment:
| Q |
1 |
tcaaatctcttgtaccaacatctgggcgcctgctttagaccatacagagatttggtcaacctgcaaaccaagttttcttttccttgttccttaaatcctt |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||| |||||||| || |||||||||||||||||||||||||||||||| ||||||||||| | ||| |||| |
|
|
| T |
42588291 |
tcaaatctcttgtaccaacatctaggcgcctgttttagaccgtatagagatttggtcaacctgcaaaccaagttttcctttccttgttcttcaaaacctt |
42588192 |
T |
|
| Q |
101 |
ccggttggagcatataaatttcttcttcaagttctccatgaagaaaagcagtctttacatccagctgttcaagatgtaaatccaatgcagcacacatcgc |
200 |
Q |
| |
|
| |||||||||||||| |||||||||||||| |||||||||||||||| ||| |||||||| | ||||||||||||||||| || ||| ||||||| || |
|
|
| T |
42588191 |
ctggttggagcatatatatttcttcttcaagctctccatgaagaaaagaagtttttacatctaattgttcaagatgtaaatcaaacgcaacacacatagc |
42588092 |
T |
|
| Q |
201 |
caacactactctgatagtagtaagtctgacaaccggagaaaatatctcattgaagtcaataccttctttctgagcatatccttttacaaccagtcttgca |
300 |
Q |
| |
|
|| |||| ||||||||| || ||||| ||||| || || ||||| | |||||| || ||||||||||| |||||||| ||||| || |||||||||||| |
|
|
| T |
42588091 |
taaaactattctgatagttgtgagtctaacaactggggagaatattttattgaaatctataccttctttttgagcataccctttaaccaccagtcttgca |
42587992 |
T |
|
| Q |
301 |
cgataccgttccacttgat |
319 |
Q |
| |
|
||||| ||||| ||||||| |
|
|
| T |
42587991 |
cgatatcgttctacttgat |
42587973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 300; Significance: 1e-169; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 1 - 316
Target Start/End: Original strand, 26977867 - 26978182
Alignment:
| Q |
1 |
tcaaatctcttgtaccaacatctgggcgcctgctttagaccatacagagatttggtcaacctgcaaaccaagttttcttttccttgttccttaaatcctt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26977867 |
tcaaatctcttgtaccaacatctgggcgcctgctttagaccgtacagagatttggtcaacctgcaaaccaagttttcttttccttgttccttaaatcctt |
26977966 |
T |
|
| Q |
101 |
ccggttggagcatataaatttcttcttcaagttctccatgaagaaaagcagtctttacatccagctgttcaagatgtaaatccaatgcagcacacatcgc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
26977967 |
ccggttggagcatataaatttcttcttcaagttctccatgaagaaaagcagtctttacatctagctgttcaagatgtaaatccaacgcagcacacatcgc |
26978066 |
T |
|
| Q |
201 |
caacactactctgatagtagtaagtctgacaaccggagaaaatatctcattgaagtcaataccttctttctgagcatatccttttacaaccagtcttgca |
300 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26978067 |
caacactactttgatagtagtaagtctgacaaccggagaaaatatctcattgaagtcaataccttctttctgagcatatccttttacaaccagtcttgca |
26978166 |
T |
|
| Q |
301 |
cgataccgttccactt |
316 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
26978167 |
cgataccgttccactt |
26978182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 319
Target Start/End: Original strand, 27875683 - 27876001
Alignment:
| Q |
1 |
tcaaatctcttgtaccaacatctgggcgcctgctttagaccatacagagatttggtcaacctgcaaaccaagttttcttttccttgttccttaaatcctt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27875683 |
tcaaatctcttgtaccaacatctgggcgcctgctttagactttacagagatttggtcaacctgcaaaccaagttttcttttccttgttccttaaatcctt |
27875782 |
T |
|
| Q |
101 |
ccggttggagcatataaatttcttcttcaagttctccatgaagaaaagcagtctttacatccagctgttcaagatgtaaatccaatgcagcacacatcgc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27875783 |
ccggttggagcatataaatttcttcttcaagttctccatgaagaaaaacagtctttacatccagctgttcaagatgtaaatccaatgcagcacacatcgc |
27875882 |
T |
|
| Q |
201 |
caacactactctgatagtagtaagtctgacaaccggagaaaatatctcattgaagtcaataccttctttctgagcatatccttttacaaccagtcttgca |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27875883 |
caacactactctgatagtagtaagtctgacaaccgtagaaaatatctcattgaagtcaataccttctttctgagcatatccttttacaaccagtcttgca |
27875982 |
T |
|
| Q |
301 |
cgataccgttccacttgat |
319 |
Q |
| |
|
|||| |||||||||||||| |
|
|
| T |
27875983 |
cgattccgttccacttgat |
27876001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 8 - 305
Target Start/End: Original strand, 18148184 - 18148482
Alignment:
| Q |
8 |
tcttgtaccaacatctgggcgcct-gctttagaccatacagagatttggtcaacctgcaaaccaagttttcttttccttgttccttaaatccttccggtt |
106 |
Q |
| |
|
|||||||||||| | ||||||||| | |||| |||||||| |||||| || |||||||||||||| ||||||||| ||| || |||||| ||| || || |
|
|
| T |
18148184 |
tcttgtaccaacctatgggcgccttgatttaaaccatacatagatttagttaacctgcaaaccaatttttcttttgcttattatttaaatgctttcgatt |
18148283 |
T |
|
| Q |
107 |
ggagcatataaatttcttcttcaagttctccatgaagaaaagcagtctttacatccagctgttcaagatgtaaatccaatgcagcacacatcgccaacac |
206 |
Q |
| |
|
|||||| || ||||||||||||||| |||| | | |||||| || |||||||||| | || |||||||||||||||||||||| ||||||| ||||||| |
|
|
| T |
18148284 |
ggagcacatgaatttcttcttcaagctctctaggtagaaaaacactctttacatctaactattcaagatgtaaatccaatgcaacacacattgccaacat |
18148383 |
T |
|
| Q |
207 |
tactctg-atagtagtaagtctgacaaccggagaaaatatctcattgaagtcaataccttctttctgagcatatccttttacaaccagtcttgcacgata |
305 |
Q |
| |
|
||| ||| || ||||| ||||| ||||||||||||||||||||||| ||||||| ||||||| ||| || |||||||||| |||| |||||||||||||| |
|
|
| T |
18148384 |
tac-ctgtattgtagtgagtctaacaaccggagaaaatatctcattaaagtcaacaccttctgtctaagaatatccttttgcaactagtcttgcacgata |
18148482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 120
Target Start/End: Complemental strand, 21964786 - 21964702
Alignment:
| Q |
35 |
ttagaccatacagagatttggtcaacctgcaaaccaagttttcttttccttgttccttaaatccttccggttggagcatataaatt |
120 |
Q |
| |
|
||||||| || | ||||||||||||| | ||||||| ||||| |||| ||||||||||||| ||| |||||||| ||||||||| |
|
|
| T |
21964786 |
ttagaccgtataaagatttggtcaacttacaaaccagattttcctttcattgttccttaaat-cttttggttggaggatataaatt |
21964702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 299; Significance: 1e-168; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 319
Target Start/End: Original strand, 9441065 - 9441383
Alignment:
| Q |
1 |
tcaaatctcttgtaccaacatctgggcgcctgctttagaccatacagagatttggtcaacctgcaaaccaagttttcttttccttgttccttaaatcctt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9441065 |
tcaaatctcttgtaccaacatctgggcgcctgctttagaccgtacagagatttggtcaacctgcaaaccaagttttcttttccttgttccttaaatcctt |
9441164 |
T |
|
| Q |
101 |
ccggttggagcatataaatttcttcttcaagttctccatgaagaaaagcagtctttacatccagctgttcaagatgtaaatccaatgcagcacacatcgc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | |||||||||||| |
|
|
| T |
9441165 |
ccggttggagcatataaatttcttcttcaagttctccatgaagaaaagcagtctttacatctagctgttcaagatgtaaatccaacgaagcacacatcgc |
9441264 |
T |
|
| Q |
201 |
caacactactctgatagtagtaagtctgacaaccggagaaaatatctcattgaagtcaataccttctttctgagcatatccttttacaaccagtcttgca |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
9441265 |
caacactactctgatagtagtaagtctgacaaccggagaaaatatctcattgaagtcaataccttctttctgagcatatccttttacaaccagccttgca |
9441364 |
T |
|
| Q |
301 |
cgataccgttccacttgat |
319 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
9441365 |
cgataccgttccacttgat |
9441383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 1 - 311
Target Start/End: Original strand, 24595465 - 24595775
Alignment:
| Q |
1 |
tcaaatctcttgtaccaacatctgggcgcctgctttagaccatacagagatttggtcaacctgcaaaccaagttttcttttccttgttccttaaatcctt |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||| |||||||| |||||||||||||||||| |||||||||||||||| ||||||||||| | ||| |||| |
|
|
| T |
24595465 |
tcaaatctcttgtaccaacatctaggcgcctgttttagaccgtacagagatttggtcaacttgcaaaccaagttttcctttccttgttcttcaaaacctt |
24595564 |
T |
|
| Q |
101 |
ccggttggagcatataaatttcttcttcaagttctccatgaagaaaagcagtctttacatccagctgttcaagatgtaaatccaatgcagcacacatcgc |
200 |
Q |
| |
|
| |||||||||||||| |||||||||||||| |||||||||||||||||||| |||||||| | ||||||||||||||||| || ||| ||||||| || |
|
|
| T |
24595565 |
ctggttggagcatatatatttcttcttcaagctctccatgaagaaaagcagtttttacatctaattgttcaagatgtaaatcaaacgcaacacacatagc |
24595664 |
T |
|
| Q |
201 |
caacactactctgatagtagtaagtctgacaaccggagaaaatatctcattgaagtcaataccttctttctgagcatatccttttacaaccagtcttgca |
300 |
Q |
| |
|
||| |||| ||||||||| || ||||| ||||| || || ||||| |||||||| || |||| ||||||||||||||| ||||| || |||||||||||| |
|
|
| T |
24595665 |
caaaactattctgatagttgtgagtctaacaactggggagaatatttcattgaaatctatactttctttctgagcataccctttaaccaccagtcttgca |
24595764 |
T |
|
| Q |
301 |
cgataccgttc |
311 |
Q |
| |
|
||||| ||||| |
|
|
| T |
24595765 |
cgatatcgttc |
24595775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 133 - 173
Target Start/End: Complemental strand, 12933841 - 12933801
Alignment:
| Q |
133 |
tctccatgaagaaaagcagtctttacatccagctgttcaag |
173 |
Q |
| |
|
|||||||||||||| |||||||||||||||| |||||||| |
|
|
| T |
12933841 |
tctccatgaagaaatgcagtctttacatccatttgttcaag |
12933801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 122; Significance: 1e-62; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 7506550 - 7506802
Alignment:
| Q |
1 |
tcaaatctcttgtaccaacatctgggcgcctgctttagaccatacagagatttggtcaacctgcaaaccaagttttcttttccttgttccttaaatcctt |
100 |
Q |
| |
|
||||||||||||||||||||||| ||||| || |||||||| |||| ||||||||||||| |||||||||||||||| ||||||||||| | ||| |||| |
|
|
| T |
7506550 |
tcaaatctcttgtaccaacatctaggcgcatgttttagaccgtacaaagatttggtcaacatgcaaaccaagttttcctttccttgttcttcaaaacctt |
7506649 |
T |
|
| Q |
101 |
ccggttggagcatataaatttcttcttcaagttctccatgaagaaaagcagtctttacatccagctgttcaagatgtaaatccaatgcagcacacatcgc |
200 |
Q |
| |
|
| ||||| |||||||| |||||||||||||| | |||||||||||||||||| |||||||| | ||||||||||||||||| || ||||||||||| || |
|
|
| T |
7506650 |
ctggttg-agcatatatatttcttcttcaagctgtccatgaagaaaagcagtttttacatctaattgttcaagatgtaaatcaaacgcagcacacatagc |
7506748 |
T |
|
| Q |
201 |
caacactactctgatagtagtaagtctgacaaccggagaaaatatctcattgaa |
254 |
Q |
| |
|
||| |||| |||||| ||| | ||||| ||||| || || ||||| |||||||| |
|
|
| T |
7506749 |
caaaactattctgatggtaatgagtctaacaactggggagaatatttcattgaa |
7506802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 221 - 329
Target Start/End: Original strand, 2324789 - 2324896
Alignment:
| Q |
221 |
taagtctgacaaccggagaaaatatctcattgaagtcaataccttctttctgagcatatccttttacaaccagtcttgcacgataccgttccacttgatg |
320 |
Q |
| |
|
||||||||||||||||| |||||||||||| |||||||||||||||||||||| |||||||||||| | || ||||| |||||||||||||||||||| |
|
|
| T |
2324789 |
taagtctgacaaccgga-aaaatatctcatcaaagtcaataccttctttctgagtatatccttttaccatcaatcttgaacgataccgttccacttgatc |
2324887 |
T |
|
| Q |
321 |
atgtccatc |
329 |
Q |
| |
|
|| |||||| |
|
|
| T |
2324888 |
atttccatc |
2324896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 112; Significance: 1e-56; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 319
Target Start/End: Complemental strand, 34972725 - 34972411
Alignment:
| Q |
1 |
tcaaatctcttgtaccaacatctgggcgcctgctttagaccatacagagatttggtcaacctgcaaaccaagttttctttt-ccttgttccttaaatcct |
99 |
Q |
| |
|
||||||||| ||||||||||| |||| || || |||||| | |||| ||||| |||||||| ||||||||||||| |||| |||| ||| || |||||| |
|
|
| T |
34972725 |
tcaaatctcatgtaccaacatttgggtgcatgttttagatcgtacatagattcagtcaacctacaaaccaagttttttttttccttcttctttgaatcct |
34972626 |
T |
|
| Q |
100 |
tccggttggagcatataaatttcttcttcaagttctccatgaagaaaagcagtctttacatccagctgttcaagatgtaaatccaatgcagcacacatcg |
199 |
Q |
| |
|
||| ||| || ||||||||||| | |||||| ||||||||||||||| || ||||| |||| || |||||||||||||||| ||||||| ||||||| | |
|
|
| T |
34972625 |
tccagttatagtatataaatttccttttcaagctctccatgaagaaaaacactctttgcatctagatgttcaagatgtaaatacaatgcaacacacatag |
34972526 |
T |
|
| Q |
200 |
ccaacactactctgatagtagtaagtctgacaaccggagaaaatatctcattgaagtcaataccttctttctgagcatatccttttacaaccagtcttgc |
299 |
Q |
| |
|
|| |||||||||||||||||||||||| ||||| | |||| |||||||||||||||||||||| ||||||||| ||||||| | |||||||| |
|
|
| T |
34972525 |
ccgccactactctgatagtagtaagtctaacaactg-----aataatacattgaagtcaataccttctttatgagcatatacttttaccagtagtcttgc |
34972431 |
T |
|
| Q |
300 |
acgataccgttccacttgat |
319 |
Q |
| |
|
| |||| |||||||||||| |
|
|
| T |
34972430 |
atgatattgttccacttgat |
34972411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 264 - 319
Target Start/End: Original strand, 11926865 - 11926920
Alignment:
| Q |
264 |
ttctttctgagcatatccttttacaaccagtcttgcacgataccgttccacttgat |
319 |
Q |
| |
|
|||||||||||||||| |||||| ||| |||||| ||||||| |||||||||||| |
|
|
| T |
11926865 |
ttctttctgagcatattattttaccaccggtcttggacgatacggttccacttgat |
11926920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0074 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0074
Description:
Target: scaffold0074; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 29009 - 29045
Alignment:
| Q |
1 |
tcaaatctcttgtaccaacatctgggcgcctgcttta |
37 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||| |
|
|
| T |
29009 |
tcaaatctcttgcaccaacatctgggcgcctgcttta |
29045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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