View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2246_low_11 (Length: 331)
Name: NF2246_low_11
Description: NF2246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2246_low_11 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 294; Significance: 1e-165; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 331
Target Start/End: Complemental strand, 21372666 - 21372336
Alignment:
| Q |
1 |
attccaaatgttgcaccacatgctgcttgtgctccaactgagaagagaatcatggatagtactgcgatcggaagtgtattcgcacgtcctaaccatatgc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21372666 |
attccaaatgttgcaccacatgctgcttgtgctccaactgagaagaggatcatggatagtactgcgatcggaagtgtattcgcacgtcctaaccatatgc |
21372567 |
T |
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| Q |
101 |
agaaaacccctcctagggtttggaggatccagagtgtccataatcttcctcgcatgccgaataatcttgctgcaacatctgatgcatatcctccgaatgg |
200 |
Q |
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||||||| |||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21372566 |
agaaaactcctcctagggtttggaggatccagagtgtccatattcttcctcgcattccgaataatcttgctgcaacatctgatgcatatcctccgaatgg |
21372467 |
T |
|
| Q |
201 |
acgagcaactatgtttgccattccaaaggatgcagcaatgattccagctgtgtgtaactttaggttaaacctgnnnnnnnatccattcattaaagatttg |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
21372466 |
acgagcaactatgtttgccattccaaaggatgcagcaatgattccagctgtgtgtaactttaggttaaacctgtttttttatccattcattaaagatttg |
21372367 |
T |
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| Q |
301 |
ttagaaaatagaaaaaatgtttattaggttt |
331 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
21372366 |
ttagaaaatagaaaaaatgtttattaggttt |
21372336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 331
Target Start/End: Original strand, 21384891 - 21385221
Alignment:
| Q |
1 |
attccaaatgttgcaccacatgctgcttgtgctccaactgagaagagaatcatggatagtactgcgatcggaagtgtattcgcacgtcctaaccatatgc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21384891 |
attccaaatgttgcaccacatgctgcttgtgctccaactgagaagaggatcatggatagtactgcgatcggaagtgtattcgcacgtcctaaccatatgc |
21384990 |
T |
|
| Q |
101 |
agaaaacccctcctagggtttggaggatccagagtgtccataatcttcctcgcatgccgaataatcttgctgcaacatctgatgcatatcctccgaatgg |
200 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
21384991 |
agaaaactcctcctagggtttggaggatccagagtgtccataatcttcctcgcataccgaataatcttgctgcaacatctgatgcatatccaccgaatgg |
21385090 |
T |
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| Q |
201 |
acgagcaactatgtttgccattccaaaggatgcagcaatgattccagctgtgtgtaactttaggttaaacctgnnnnnnnatccattcattaaagatttg |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
21385091 |
acgagcaactatgtttgccattccaaaggatgcagcaatgattccagctgtgtgtaactttaggttaaacctgtttttttatccattcattaaagatttg |
21385190 |
T |
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| Q |
301 |
ttagaaaatagaaaaaatgtttattaggttt |
331 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
21385191 |
ttagaaaatagaaaaaatgtttattaggttt |
21385221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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