View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2246_low_13 (Length: 301)
Name: NF2246_low_13
Description: NF2246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2246_low_13 |
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Alignment Details
Target: chr6 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 21 - 284
Target Start/End: Original strand, 8158816 - 8159079
Alignment:
| Q |
21 |
tagaactatttaaggagggtgtaattaggtatttgccaagtccaatcaatgttagtaattatgctcttgatcaaaatagaaagggcgagaaagttgaatt |
120 |
Q |
| |
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||||| |||||| |||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| || ||||||||||||||||| |
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| T |
8158816 |
tagaagtatttatggagggtgtaattaggtatttgccgagtccaatcgatgttagtaattatgctcttgatcaaaataggaatggcgagaaagttgaatt |
8158915 |
T |
|
| Q |
121 |
gtctggaagtattgatgcaccatttgttgcaaaggctttcgcaaattggcataggacctatttaaaatttacttatctaagaatctatcagggtgttatc |
220 |
Q |
| |
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|||||||||||||||||| |||||||||||||||||||||| || |||| |||||| ||||||||||| ||||| |||||||| |||||||||||||| |
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| T |
8158916 |
gtctggaagtattgatgctccatttgttgcaaaggctttcgtaacttggtataggatgtatttaaaattaacttacctaagaatttatcagggtgttatt |
8159015 |
T |
|
| Q |
221 |
aagaagggtgattttattacaaatgttaacactggtgagaagattctgattcctcgtttgggta |
284 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |
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| T |
8159016 |
aagaagggtgattttattacaaatgttaacactggtaagaagattgagattcctcgtttgggta |
8159079 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 24 - 282
Target Start/End: Complemental strand, 18702145 - 18701887
Alignment:
| Q |
24 |
aactatttaaggagggtgtaattaggtatttgccaagtccaatcaatgttagtaattatgctcttgatcaaaatagaaagggcgagaaagttgaattgtc |
123 |
Q |
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||||||| | |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| || || ||||||||||||||||| |
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| T |
18702145 |
aactattaatggagggtgtaattaggtatttgccaagtccaatcgatgttagtaattatgctcttgatctaaataagaatggtgagaaagttgaattgtc |
18702046 |
T |
|
| Q |
124 |
tggaagtattgatgcaccatttgttgcaaaggctttcgcaaattggcataggacctatttaaaatttacttatctaagaatctatcagggtgttatcaag |
223 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||| || ||||| ||||| ||||||||||||||||||||||||||||| ||| |
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| T |
18702045 |
tggaagtattgatgcaccatttgttgcaaaggcttttgcaaattggcatgagaggtatttcaaattaacttatctaagaatctatcagggtgttattaag |
18701946 |
T |
|
| Q |
224 |
aagggtgattttattacaaatgttaacactggtgagaagattctgattcctcgtttggg |
282 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| |
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| T |
18701945 |
aagggtgattttattacaaatgttaacactggtaagaagattcagattcctcgtttggg |
18701887 |
T |
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Target: chr3 (Bit Score: 181; Significance: 8e-98; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 24 - 280
Target Start/End: Complemental strand, 4084655 - 4084399
Alignment:
| Q |
24 |
aactatttaaggagggtgtaattaggtatttgccaagtccaatcaatgttagtaattatgctcttgatcaaaatagaaagggcgagaaagttgaattgtc |
123 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| ||||||||| |||||||||||||||||| |||||||||||| || || |||||||||||||||| |
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|
| T |
4084655 |
aactatttatggagggtgtaattaggtatttgccgagtccaatcgatgttagtaattatgctcatgatcaaaataggaatggtgagaaagttgaattgtt |
4084556 |
T |
|
| Q |
124 |
tggaagtattgatgcaccatttgttgcaaaggctttcgcaaattggcataggacctatttaaaatttacttatctaagaatctatcagggtgttatcaag |
223 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||| || ||||||||||| | | ||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
4084555 |
tggaagtattgatgcaccatttgttggaaaggctttcacatattggcataggccgtttttaaaattaacttatctaagaatctatcagggtgttatcaag |
4084456 |
T |
|
| Q |
224 |
aagggtgattttattacaaatgttaacactggtgagaagattctgattcctcgtttg |
280 |
Q |
| |
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||||||||||||||||||||||||||||| ||| |||||||| ||||||||||||| |
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| T |
4084455 |
aagggtgattttattacaaatgttaacaccggtaagaagattaagattcctcgtttg |
4084399 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 149; Significance: 1e-78; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 20 - 280
Target Start/End: Complemental strand, 43896541 - 43896281
Alignment:
| Q |
20 |
ttagaactatttaaggagggtgtaattaggtatttgccaagtccaatcaatgttagtaattatgctcttgatcaaaatagaaagggcgagaaagttgaat |
119 |
Q |
| |
|
||||||||| ||| |||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| || || ||||||||||||| |
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| T |
43896541 |
ttagaactacttatggagggtgtaattaggtatttgccgggtccaatcgatgttagtaattatgctcttgatcaaaataggaatggtgagaaagttgaat |
43896442 |
T |
|
| Q |
120 |
tgtctggaagtattgatgcaccatttgttgcaaaggctttcgcaaattggcataggacctatttaaaatttacttatctaagaatctatcagggtgttat |
219 |
Q |
| |
|
|||||||||| |||||||| |||||||||||||||| |||| ||||| | ||||| || | | | ||||||||||||||||||||||||||||| |
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| T |
43896441 |
tgtctggaagcattgatgcgccatttgttgcaaaggttttcacaaatgtgattaggaatgatggattagtaacttatctaagaatctatcagggtgttat |
43896342 |
T |
|
| Q |
220 |
caagaagggtgattttattacaaatgttaacactggtgagaagattctgattcctcgtttg |
280 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| |
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| T |
43896341 |
taagaagggtgattttattacaaatgttaacactggtaagaagattcagattcctcgtttg |
43896281 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 19 - 271
Target Start/End: Complemental strand, 44301890 - 44301636
Alignment:
| Q |
19 |
attagaactatttaaggagggtgtaattaggtatttgccaagtccaatcaatgttagtaattatgctcttgatcaaaatagaaagggcgagaaagttgaa |
118 |
Q |
| |
|
|||||||||| ||| ||||| |||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| || || |||||||||||| |
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| T |
44301890 |
attagaactacttatggaggatgtaattaggtatttgccgagtccaatcgatgttagtaattatgctcttgatcaaaataagaatggtgagaaagttgaa |
44301791 |
T |
|
| Q |
119 |
ttgtctggaagtattgatgcaccatttgttgcaaaggctttcgcaaattggcataggacctatttaaaattt--acttatctaagaatctatcagggtgt |
216 |
Q |
| |
|
|||||||||||| ||||||| |||||||| ||||||| |||| |||||| | || ||| || | ||| |||| ||||||||||||||||||||| |
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| T |
44301790 |
ttgtctggaagtgttgatgcgccatttgtagcaaaggttttcacaaatttgtattggagtgatggattcttttaacttgtctaagaatctatcagggtgt |
44301691 |
T |
|
| Q |
217 |
tatcaagaagggtgattttattacaaatgttaacactggtgagaagattctgatt |
271 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
44301690 |
tatcaagaagggtgattttattacaaatgttaacactggtgagaagattcagatt |
44301636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 20 - 272
Target Start/End: Complemental strand, 44306995 - 44306743
Alignment:
| Q |
20 |
ttagaactatttaaggagggtgtaattaggtatttgccaagtccaatcaatgttagtaattatgctcttgatcaaaatagaaagggcgagaaagttgaat |
119 |
Q |
| |
|
||||||||| ||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| || || |||||| |||||| |
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|
| T |
44306995 |
ttagaactacttagggagggtgtaattaggtatttgccaagtccaatcgatgttagtaattatgctcttgatctaaataagaatggtgagaaaattgaat |
44306896 |
T |
|
| Q |
120 |
tgtctggaagtattgatgcaccatttgttgcaaaggctttcgcaaattggc---ataggacctatttaaaatttacttatctaagaatctatcagggtgt |
216 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||| ||||| | | |||| | || ||| |||||||||||||||||||||||||| |
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| T |
44306895 |
tgtctggaagtattgatgcgccatttgttgcaaaggctttcacaaataatcttaacaggagtgactt---attaacttatctaagaatctatcagggtgt |
44306799 |
T |
|
| Q |
217 |
tatcaagaagggtgattttattacaaatgttaacactggtgagaagattctgattc |
272 |
Q |
| |
|
||| ||||||| |||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
44306798 |
tattaagaaggatgattttattacaaatgttaacactggtgagaagattcagattc |
44306743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 41 - 284
Target Start/End: Complemental strand, 44312753 - 44312510
Alignment:
| Q |
41 |
gtaattaggtatttgccaagtccaatcaatgttagtaattatgctcttgatcaaaatagaaagggcgagaaagttgaattgtctggaagtattgatgcac |
140 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || || |||||||||||||||||||||||| |||||| | |
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| T |
44312753 |
gtaattaggtatttgccaagtccaatcgatgttagtaattatgctcttgatcaaaataagaatggtgagaaagttgaattgtctggaagtgttgatgagc |
44312654 |
T |
|
| Q |
141 |
catttgttgcaaaggctttcgcaaattggcataggacctattta-aaatttacttatctaagaatctatcagggtgttatcaagaagggtgattttatta |
239 |
Q |
| |
|
||||||| ||||||| |||| ||||| | |||||| || || ||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
44312653 |
catttgtagcaaaggttttcacaaatatgtatagga-ttaggtacttattaacttatctaagaatctatcagggtgttattaagaagggtgattttatta |
44312555 |
T |
|
| Q |
240 |
caaatgttaacactggtgagaagattctgattcctcgtttgggta |
284 |
Q |
| |
|
|||| |||||||||||| |||||||| ||||||| ||||||||| |
|
|
| T |
44312554 |
caaacgttaacactggtaagaagattaagattccttgtttgggta |
44312510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 50 - 265
Target Start/End: Original strand, 35856591 - 35856802
Alignment:
| Q |
50 |
tatttgccaagtccaatcaatgttagtaattatgctcttgatcaaaatagaaagggcgagaaagttgaattgtctggaagtattgatgcaccatttgttg |
149 |
Q |
| |
|
|||||||| |||||||| || | ||||||||||||||||||||| ||| || || |||||||| |||||||||||||||||||||| || ||||| | |
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| T |
35856591 |
tatttgccgagtccaattgatttgagtaattatgctcttgatcaagctaggaatggagagaaagtagaattgtctggaagtattgatgggccgtttgtcg |
35856690 |
T |
|
| Q |
150 |
caaaggctttcgcaaattggcataggacctatttaaaatttacttatctaagaatctatcagggtgttatcaagaagggtgattttattacaaatgttaa |
249 |
Q |
| |
|
|| ||||||| | | |||||||| || ||||| || |||||||||||||||||||| ||||| | || || ||||||||||| |||||||| |
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|
| T |
35856691 |
cattggctttcacga----gcataggatgctttgtaaattaacatatctaagaatctatcagggcgttattagaaaaggggattttattactaatgttaa |
35856786 |
T |
|
| Q |
250 |
cactggtgagaagatt |
265 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
35856787 |
cactggtgagaagatt |
35856802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 255
Target Start/End: Complemental strand, 10541444 - 10541388
Alignment:
| Q |
199 |
aagaatctatcagggtgttatcaagaagggtgattttattacaaatgttaacactgg |
255 |
Q |
| |
|
|||||||||| ||||||| || |||||| |||||||||||||||| ||||||||| |
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|
| T |
10541444 |
aagaatctatgagggtgtcattcggaagggagattttattacaaatgataacactgg |
10541388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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