View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2246_low_14 (Length: 273)
Name: NF2246_low_14
Description: NF2246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2246_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 41653963 - 41654217
Alignment:
| Q |
1 |
agtcttgaaatataaggtaatttatttaccactctccaatatttaaccagccaatttctctgcaattgtcttatggggtcatcctttaacttccaggggt |
100 |
Q |
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| T |
41653963 |
agtcttgaaatataaggtaatttatttaccactctccaatatttaaccagccaatttctctgcaattgtcttatggggtcatcctttaacttccaggggt |
41654062 |
T |
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| Q |
101 |
caaacatttatgtgaagaatattgatgacaatgttagtgatgaaggactgagagatcactttagtgtatgcggcactataacttctgcaaagattatgcg |
200 |
Q |
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| T |
41654063 |
caaacatttatgtgaagaatattgatgacaatgttagtgatgaaggactgagagatcactttagtgtatgtggcactataacttctgcaaagattatgcg |
41654162 |
T |
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| Q |
201 |
agatgacaaagggataagcaaaggatttggttttgtgtgcttctccactcctgag |
255 |
Q |
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| T |
41654163 |
agatgacaaagggataagcaaaggatttggttttgtgtgcttctccactcctgag |
41654217 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 85 - 236
Target Start/End: Complemental strand, 27026957 - 27026806
Alignment:
| Q |
85 |
tttaacttccaggggtcaaacatttatgtgaagaatattgatgacaatgttagtgatgaaggactgagagatcactttagtgtatgcggcactataactt |
184 |
Q |
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|||||||| ||||| |||||||||||||||||||| |||||| || |||| | ||||||| ||| | || || ||||||| ||| ||| | | |
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| T |
27026957 |
tttaactttcagggatcaaacatttatgtgaagaacattgataccagtgttggcgatgaagaactacgggaccattttagtgcatgtggcgaagtcttgt |
27026858 |
T |
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| Q |
185 |
ctgcaaagattatgcgagatgacaaagggataagcaaaggatttggttttgt |
236 |
Q |
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| T |
27026857 |
ctgcaaaagttatgcgagatgacaaagggacaagcaaggggtttggttttgt |
27026806 |
T |
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