View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2246_low_18 (Length: 245)
Name: NF2246_low_18
Description: NF2246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2246_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 18 - 237
Target Start/End: Complemental strand, 230423 - 230204
Alignment:
| Q |
18 |
ctctttgatctgaggagccctaggagggtgaatattaactctgaacttcttgatgatagcaaaatccgacattgatgagtttgatgaagctttggagttg |
117 |
Q |
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| T |
230423 |
ctctttgatctgaggagccctaggagagtgaatattaactctgaacttcttgatgatagaaaaatccgacattgatgagtttgatgaagctttggagttg |
230324 |
T |
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| Q |
118 |
ttaccagataaagctacattagcagagattaaagaaatggcactcttccaatgtattgttgtatctttgaatctagaagtattcctggcaaaccaaatag |
217 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| ||||||||||| |
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| T |
230323 |
ttaccagataaagctacattagaagagattaaagaaatggcactcttccaatgtattgttttatctttgaatctagttgtattcctggaaaaccaaatag |
230224 |
T |
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| Q |
218 |
ttgataaaacattgatgatg |
237 |
Q |
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||||||| |||||||||||| |
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| T |
230223 |
ttgataagacattgatgatg |
230204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 97; Significance: 9e-48; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 18 - 118
Target Start/End: Complemental strand, 12488051 - 12487951
Alignment:
| Q |
18 |
ctctttgatctgaggagccctaggagggtgaatattaactctgaacttcttgatgatagcaaaatccgacattgatgagtttgatgaagctttggagttg |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
12488051 |
ctctttgatctgaggagccctaggagggtgaatattaactctgaacttcttgatgatagcaaaatccgacattgatgagtttgatgaagctttggaattg |
12487952 |
T |
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| Q |
118 |
t |
118 |
Q |
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| |
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| T |
12487951 |
t |
12487951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 22 - 223
Target Start/End: Complemental strand, 21851260 - 21851059
Alignment:
| Q |
22 |
ttgatctgaggagccctaggagggtgaatattaactctgaacttcttgatgatagcaaaatccgacattgatgagtttgatgaagctttggagttgttac |
121 |
Q |
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||||||||||| || || ||||| ||||| || ||||| ||||||||||||||| ||||||| | ||| || || || || ||||||| |||||||||| |
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| T |
21851260 |
ttgatctgaggggctcttggaggatgaatgttcactctaaacttcttgatgataacaaaatcagtcatagaagaattagaaaaagctttagagttgttac |
21851161 |
T |
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| Q |
122 |
cagataaagctacattagcagagattaaagaaatggcactcttccaatgtattgttgtatctttgaatctagaagtattcctggcaaaccaaatagttga |
221 |
Q |
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|||| |||| ||||| | || |||||||| || ||| |||||| || ||| | |||| |||||||||| | |||||| ||||||| |||||||| |
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| T |
21851160 |
cagacaaagtcacatttgaggaaattaaagagattgcagacttccagtgaatttgtttatccttgaatctagctgaattccttacaaaccagatagttga |
21851061 |
T |
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| Q |
222 |
ta |
223 |
Q |
| |
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|| |
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| T |
21851060 |
ta |
21851059 |
T |
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