View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2246_low_19 (Length: 244)
Name: NF2246_low_19
Description: NF2246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2246_low_19 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 16 - 244
Target Start/End: Original strand, 41722878 - 41723106
Alignment:
| Q |
16 |
attgtgaacatgtgtgaacacataagccataaagtcaccttttgttgatatgttttcacatggcagtaatacatgtttgacaaaagggctttgcaattta |
115 |
Q |
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| T |
41722878 |
attgtgaacatgtgtgaacacataagccataaagtcaccttttgttgatatgttttcacatggcagtaatacatgtttgacaaaagggttttgcaattta |
41722977 |
T |
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| Q |
116 |
ccattcagattttcggtgccaacattgtcaacataaattggttggcagtttggctattatctatggtaataaatgaaaatggttgaggcatggcttttac |
215 |
Q |
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| T |
41722978 |
ccattcagattttcggtgccaacattgtcaacataaattggttggcagtttggctattatctatggtaataaatgaaaatggttgaggcatggcttttac |
41723077 |
T |
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| Q |
216 |
ggtcctataaatagcatgtcccttgcacc |
244 |
Q |
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| T |
41723078 |
ggtcctataaatagcatgtcccttgcacc |
41723106 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 18 - 244
Target Start/End: Original strand, 41718154 - 41718380
Alignment:
| Q |
18 |
tgtgaacatgtgtgaacacataagccataaagtcaccttttgttgatatgttttcacatggcagtaatacatgtttgacaaaagggctttgcaatttacc |
117 |
Q |
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| T |
41718154 |
tgtgaacatgtgtgaacacataagccataaagtcaccttttgttgatatgttttcacatggcagtaatacatgtttgacaaaagggttttgcaatttacc |
41718253 |
T |
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| Q |
118 |
attcagattttcggtgccaacattgtcaacataaattggttggcagtttggctattatctatggtaataaatgaaaatggttgaggcatggcttttacgg |
217 |
Q |
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| T |
41718254 |
attcagattttcggtgccaacattgtcaacataaattggttggcagtttggctattatctatggtaataaatgaaaatggttgaggcatggcttttacgg |
41718353 |
T |
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| Q |
218 |
tcctataaatagcatgtcccttgcacc |
244 |
Q |
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| T |
41718354 |
tcctataaatagcatgtcccttgcacc |
41718380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 161
Target Start/End: Original strand, 48781266 - 48781360
Alignment:
| Q |
68 |
ttttcacatggcagtaatacatgtttgacaaaagggc--tttgcaatttaccattcagattttcggtgccaacattgtcaacataaattggttggc |
161 |
Q |
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| T |
48781266 |
ttttcacatggcagtaaaaggtgtttgacgaaagggctttttgc-atttaacatttatatttttggtgcatatattttcaacataaattggttggc |
48781360 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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