View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2246_low_22 (Length: 202)
Name: NF2246_low_22
Description: NF2246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2246_low_22 |
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| [»] chr4 (6 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 18 - 202
Target Start/End: Complemental strand, 26084659 - 26084475
Alignment:
| Q |
18 |
tcgacattgtatatttgcagaatccttttgatcatttataccgtgattcggatgttgagtccatgagcgatggtcataataacatgacagcttatggcta |
117 |
Q |
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| T |
26084659 |
tcgacattgtatatttgcagaatccttttgatcatttataccgtgattcggatgttgagtccatgagcgatggtcataataacatgacagcttatggcta |
26084560 |
T |
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| Q |
118 |
caacgatgtcttcaaagaccatgggatgggttggtctactaacgtttataccacgaggatatttgtttacaattctggtttcttc |
202 |
Q |
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| T |
26084559 |
caacgatgtcttcaaagaccatgggatgggttggtctactaacgtttataccacgaggatatttgtttacaattctggtttcttc |
26084475 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 18 - 202
Target Start/End: Complemental strand, 26120221 - 26120037
Alignment:
| Q |
18 |
tcgacattgtatatttgcagaatccttttgatcatttataccgtgattcggatgttgagtccatgagcgatggtcataataacatgacagcttatggcta |
117 |
Q |
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|||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26120221 |
tcgatattgtatatttgcagaatccttttgatcatctataccgtgattcggatgttgagtccatgagcgatggtcataataacatgacagcttatggcta |
26120122 |
T |
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| Q |
118 |
caacgatgtcttcaaagaccatgggatgggttggtctactaacgtttataccacgaggatatttgtttacaattctggtttcttc |
202 |
Q |
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| T |
26120121 |
caacgatgtcttcaacgaccctgggatgggttggtctagtggcgtttttaccaggaggatatttgtttacaatgctggtttcttc |
26120037 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 18 - 202
Target Start/End: Complemental strand, 26096934 - 26096750
Alignment:
| Q |
18 |
tcgacattgtatatttgcagaatccttttgatcatttataccgtgattcggatgttgagtccatgagcgatggtcataataacatgacagcttatggcta |
117 |
Q |
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| T |
26096934 |
tcgacattgtatatttgcagaatccttttgatcatctataccgtgattcagatgttgagtccatgagtgatggtcatgataacatgacagcttatggtta |
26096835 |
T |
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| Q |
118 |
caacgatgtcttcaaagaccatgggatgggttggtctactaacgtttataccacgaggatatttgtttacaattctggtttcttc |
202 |
Q |
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| T |
26096834 |
caacgatgtcttcgacgaccctgggatgggttggtctagtggtgtttataccaggaggatatttgtttacaattgtggtttcttc |
26096750 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 18 - 202
Target Start/End: Complemental strand, 26126878 - 26126694
Alignment:
| Q |
18 |
tcgacattgtatatttgcagaatccttttgatcatttataccgtgattcggatgttgagtccatgagcgatggtcataataacatgacagcttatggcta |
117 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
26126878 |
tcgacattgtatatttgcagaatccttttgatcatctataccgtgattcggatgtagagtccatgagcgatggtcatgataacatgacagcttatggctt |
26126779 |
T |
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| Q |
118 |
caacgatgtcttcaaagaccatgggatgggttggtctactaacgtttataccacgaggatatttgtttacaattctggtttcttc |
202 |
Q |
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| T |
26126778 |
taacgatgtctttgacgaacctctgatgggttggtctcgtatcgttcatacaactaggatatgggtttacaattctggtttcttc |
26126694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 27 - 202
Target Start/End: Complemental strand, 26064925 - 26064750
Alignment:
| Q |
27 |
tatatttgcagaatccttttgatcatttataccgtgattcggatgttgagtccatgagcgatggtcataataacatgacagcttatggctacaacgatgt |
126 |
Q |
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| T |
26064925 |
tatatttgcagaatccttttgatcatttataccgtgattcggatgttgagtccatgagcgatggtcataataacatgacagcttatggctacaacgatat |
26064826 |
T |
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| Q |
127 |
cttcaaagaccatgggatgggttggtctactaacgtttataccacgaggatatttgtttacaattctggtttcttc |
202 |
Q |
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| T |
26064825 |
ctatgatgagcccgtgatgggttggtctcgaatagttcatacaactaggatatgggtttacaattctggtttcttc |
26064750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 20 - 202
Target Start/End: Complemental strand, 26036284 - 26036102
Alignment:
| Q |
20 |
gacattgtatatttgcagaatccttttgatcatttataccgtgattcggatgttgagtccatgagcgatggtcataataacatgacagcttatggctaca |
119 |
Q |
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|||||||||||||| |||||||||||||||||| ||||||||||||| ||||| ||||||||||| ||||| |||||||||||||||||||| ||||| | |
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| T |
26036284 |
gacattgtatatttacagaatccttttgatcatctataccgtgattcagatgtcgagtccatgagtgatggccataataacatgacagcttacggctata |
26036185 |
T |
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| Q |
120 |
acgatgtcttcaaagaccatgggatgggttggtctactaacgtttataccacgaggatatttgtttacaattctggtttcttc |
202 |
Q |
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| T |
26036184 |
acgatgtcttcgacgaacctgcgatgggttgggctcgatacgctcataccatgaggatatgggtttacaattccggtttcttc |
26036102 |
T |
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