View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2246_low_3 (Length: 438)
Name: NF2246_low_3
Description: NF2246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2246_low_3 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 19 - 424
Target Start/End: Complemental strand, 34816645 - 34816242
Alignment:
| Q |
19 |
atgacacactctagtcattgttaaaccgaaaagaatctagggaagacttctcggagaggatactcgctgacccacttatcatgccagaaaagaatatgta |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34816645 |
atgacacactctagtcattgttaaaccgaaaagaatctagggaagacttctcggagaggatactcgctgacccacttatcatgccagaaaagaatatgta |
34816546 |
T |
|
| Q |
119 |
ctcccaccatttcccattttttccgcatcatacccttgaaccaatcctctcccccgacccccattacccacaccacacaagtccttccaccacaatgaag |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34816545 |
ctcccaccatttcccattttttccgcatcatacccttgaaccaatcctctcccccaacccccattacccacaccacacaagtccttccaccacaatgaag |
34816446 |
T |
|
| Q |
219 |
ctagactcaatctgtcaaaattagataaatccgagttagccacaatactaactttgtacttggcatataaggcaccttttgcaatgagaatcacccttgc |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||||||||||||||||||||||||||||| |
|
|
| T |
34816445 |
ctagactcaatctgtcaaaattagataaatccgagttagccacaataccaactttgtacttggc--atacggcaccttttgcaatgagaatcacccttgc |
34816348 |
T |
|
| Q |
319 |
agtagtactctcattaatgatattgggatagaacccaaaatagaattgatgtgaacgactctaccactgagactaacatatatatcctcaacgatcgcaa |
418 |
Q |
| |
|
|| |||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
34816347 |
agcagtactctcattaatgatgttgggatagaacccaaaatagaattgatgtgaacaactctaccactgagactaacatatgtatcctcaacgatcgcaa |
34816248 |
T |
|
| Q |
419 |
tttgat |
424 |
Q |
| |
|
|||||| |
|
|
| T |
34816247 |
tttgat |
34816242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University