View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2246_low_4 (Length: 433)
Name: NF2246_low_4
Description: NF2246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2246_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 70 - 417
Target Start/End: Complemental strand, 31532932 - 31532585
Alignment:
| Q |
70 |
gacaaaagagttatgtattcaattgtttagctatttaattgttgtctcatgagacgattaataatgtgagnnnnnnnncttagacggcaatgactatact |
169 |
Q |
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| T |
31532932 |
gacaaaagagttatgtattcaattgtttagctatttaattgttgtctcatgagacgattgataatgtgagaaaaaaaacttagacggcaatgactatact |
31532833 |
T |
|
| Q |
170 |
catcctccaatttttgctctcccattgagacgatctctctaatcataaaggtatatcattcttgatcaatcacattgaaaatatatgttataattatgat |
269 |
Q |
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| T |
31532832 |
catcctctaatttttgctctcccatagagacgatctctctaatcataaaggtatatcattcttgatcaatcacattgaaaatatatgttataattatgat |
31532733 |
T |
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| Q |
270 |
ttggttattctattaaaattggggacccaatcaatcnnnnnnnnnnnnnnnnnnnnnnnnntatggaacagttttggtatatatttacaccatattattt |
369 |
Q |
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| T |
31532732 |
ttggttattctattaaaattggggacccaatcaatctaaaaaaaaataataaaaataaaattatggaacagttttggtatatatttacaccagattattt |
31532633 |
T |
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| Q |
370 |
gatataacaaacataaggcacatgctaagaccatggagccgagctttt |
417 |
Q |
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| T |
31532632 |
gatataacaaacataaggcacatgctaagaccatggagccaagctttt |
31532585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 13 - 60
Target Start/End: Complemental strand, 31532998 - 31532953
Alignment:
| Q |
13 |
tgagatgaattactttgttaaacctaataagagagatttatgtactta |
60 |
Q |
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| T |
31532998 |
tgagatgaattactttgttaaacctaataa--gagatttatgtactta |
31532953 |
T |
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