View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2246_low_6 (Length: 412)

Name: NF2246_low_6
Description: NF2246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2246_low_6
NF2246_low_6
[»] chr2 (12 HSPs)
chr2 (14-412)||(8009609-8010001)
chr2 (316-382)||(31395564-31395630)
chr2 (314-382)||(28898027-28898095)
chr2 (318-382)||(37719831-37719895)
chr2 (314-382)||(4964792-4964860)
chr2 (347-382)||(9470107-9470142)
chr2 (316-375)||(15508909-15508968)
chr2 (317-383)||(37228494-37228560)
chr2 (349-382)||(3804612-3804645)
chr2 (317-382)||(28898156-28898221)
chr2 (321-382)||(42182889-42182950)
chr2 (322-382)||(1107039-1107099)
[»] chr3 (8 HSPs)
chr3 (331-382)||(24748917-24748968)
chr3 (324-382)||(46237165-46237223)
chr3 (349-382)||(5452179-5452212)
chr3 (317-378)||(27243041-27243102)
chr3 (349-382)||(46156743-46156776)
chr3 (318-412)||(54140887-54140977)
chr3 (318-382)||(10769719-10769783)
chr3 (317-381)||(37600123-37600187)
[»] chr5 (8 HSPs)
chr5 (319-376)||(6263881-6263938)
chr5 (317-386)||(26072221-26072290)
chr5 (316-376)||(4959406-4959466)
chr5 (307-382)||(17568685-17568760)
chr5 (316-374)||(42224718-42224776)
chr5 (317-374)||(34818316-34818373)
chr5 (318-382)||(4959275-4959339)
chr5 (322-374)||(26227016-26227068)
[»] chr8 (1 HSPs)
chr8 (318-378)||(8914768-8914828)
[»] chr7 (8 HSPs)
chr7 (318-382)||(17354646-17354710)
chr7 (322-378)||(25428477-25428533)
chr7 (307-382)||(14759765-14759840)
chr7 (318-376)||(27888409-27888467)
chr7 (317-382)||(19840878-19840943)
chr7 (350-382)||(31502583-31502615)
chr7 (331-375)||(39254211-39254255)
chr7 (315-375)||(42887754-42887814)
[»] chr6 (3 HSPs)
chr6 (317-381)||(19090208-19090272)
chr6 (318-376)||(10060987-10061045)
chr6 (349-382)||(34905364-34905397)
[»] chr1 (4 HSPs)
chr1 (318-376)||(11430568-11430626)
chr1 (313-382)||(43851154-43851223)
chr1 (318-382)||(13388331-13388395)
chr1 (318-378)||(50773234-50773294)


Alignment Details
Target: chr2 (Bit Score: 266; Significance: 1e-148; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 14 - 412
Target Start/End: Complemental strand, 8010001 - 8009609
Alignment:
Q  14 atataactatatatgggttgttgactaatccaaattgcctgctataaaaaagcacatgttgacatgtggtaaatgatttcaacctttaatctaagatcga 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  8010001 atataactatatatgggttgttgactaatccaaattgcctgctataaaaaagcacatgtcgacatgtggtaaatgatttcaacctttaatctaagatcga 8009902  T
Q  114 agggcttatttataccatacacaataaatttttaacaatctcatttgacgttgttattaataagataagattgttgacaaaataaatgcatcaaattgaa 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8009901 agggcttatttataccatacacaataaatttttaacaatctcattcgacgttgttattaataagataagattgttgacaaaataaatgcatcaaattgaa 8009802  T
Q  214 atccattactgatagctgggtcgtccttcccttag-nnnnnnnnnnnntaatggtcgttccaaccggcaaccacagtccaaaaagcacgaaagaatataa 312  Q
    |||||||||||||||||||||||||||| ||||||             |||||||||||||||||||||||||||||||||||||||  |||||||||||    
T  8009801 atccattactgatagctgggtcgtcctttccttagaaaaaaataataataatggtcgttccaaccggcaaccacagtccaaaaagcataaaagaatataa 8009702  T
Q  313 tttttgaggaatgttagtaacattctctcttgagcgctctctttaacactcactcttttattggatgaaaacaaacaatatagaacctacactctgaaaa 412  Q
    |||||||||||||       || ||| |||||| | |||| | || |||||| | |||||||| ||||||||||||||||||||||||||||||| ||||    
T  8009701 tttttgaggaatg-------cactctatcttgaacactctttctagcactcattattttattgaatgaaaacaaacaatatagaacctacactctaaaaa 8009609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 316 - 382
Target Start/End: Complemental strand, 31395630 - 31395564
Alignment:
Q  316 ttgaggaatgttagtaacattctctcttgagcgctctctttaacactcactcttttattggatgaaa 382  Q
    |||||||||||||| |||| ||||| |||||| ||||||||| ||||||||| |||||||| |||||    
T  31395630 ttgaggaatgttagcaacactctcttttgagcactctctttagcactcactcctttattgggtgaaa 31395564  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 314 - 382
Target Start/End: Original strand, 28898027 - 28898095
Alignment:
Q  314 ttttgaggaatgttagtaacattctctcttgagcgctctctttaacactcactcttttattggatgaaa 382  Q
    |||||| ||||| ||| |||| ||||| |||||  ||||||||| ||||||||||||||||||||||||    
T  28898027 ttttgaagaatgctagcaacactctcttttgagtactctctttagcactcactcttttattggatgaaa 28898095  T

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Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 318 - 382
Target Start/End: Original strand, 37719831 - 37719895
Alignment:
Q  318 gaggaatgttagtaacattctctcttgagcgctctctttaacactcactcttttattggatgaaa 382  Q
    |||||||| ||| |||||||||| |||||| |||| | || ||||||||||||||||||||||||    
T  37719831 gaggaatgctagcaacattctcttttgagcactctttctagcactcactcttttattggatgaaa 37719895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 314 - 382
Target Start/End: Complemental strand, 4964860 - 4964792
Alignment:
Q  314 ttttgaggaatgttagtaacattctctcttgagcgctctctttaacactcactcttttattggatgaaa 382  Q
    |||||||||||| ||| |||||||||| |||||  |||||| || |||||||| ||||||||| |||||    
T  4964860 ttttgaggaatgctagcaacattctcttttgagtactctctctagcactcacttttttattgggtgaaa 4964792  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 347 - 382
Target Start/End: Original strand, 9470107 - 9470142
Alignment:
Q  347 cgctctctttaacactcactcttttattggatgaaa 382  Q
    |||||||| |||||||||||||||||||||||||||    
T  9470107 cgctctctctaacactcactcttttattggatgaaa 9470142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 316 - 375
Target Start/End: Original strand, 15508909 - 15508968
Alignment:
Q  316 ttgaggaatgttagtaacattctctcttgagcgctctctttaacactcactcttttattg 375  Q
    |||||||||||||| |||| ||||| |||| | |||| | ||||||||||||||||||||    
T  15508909 ttgaggaatgttagcaacactctcttttgaacactctttctaacactcactcttttattg 15508968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 317 - 383
Target Start/End: Original strand, 37228494 - 37228560
Alignment:
Q  317 tgaggaatgttagtaacattctctcttgagcgctctctttaacactcactcttttattggatgaaaa 383  Q
    |||| |||| ||| |||| ||||| |||||| |||||| || |||||||||||||||||| ||||||    
T  37228494 tgagaaatgctagcaacactctcttttgagcactctctctagcactcactcttttattgggtgaaaa 37228560  T

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Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 349 - 382
Target Start/End: Original strand, 3804612 - 3804645
Alignment:
Q  349 ctctctttaacactcactcttttattggatgaaa 382  Q
    |||||||||||| |||||||||||||||||||||    
T  3804612 ctctctttaacattcactcttttattggatgaaa 3804645  T

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Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 382
Target Start/End: Complemental strand, 28898221 - 28898156
Alignment:
Q  317 tgaggaatgttagtaacattctctcttgagcgctctctttaacactcactcttttattggatgaaa 382  Q
    ||||||||| ||| |||| ||| | |||||| |||||| || |||||||||||||||||| |||||    
T  28898221 tgaggaatgctagcaacactcttttttgagcactctctctagcactcactcttttattgggtgaaa 28898156  T

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Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 321 - 382
Target Start/End: Original strand, 42182889 - 42182950
Alignment:
Q  321 gaatgttagtaacattctctcttgagcgctctctttaacactcactcttttattggatgaaa 382  Q
    ||||| ||| |||| ||||| |||||| |||||| || |||||||||||||||||| |||||    
T  42182889 gaatgctagcaacactctcttttgagcactctctctagcactcactcttttattgggtgaaa 42182950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 322 - 382
Target Start/End: Original strand, 1107039 - 1107099
Alignment:
Q  322 aatgttagtaacattctctcttgagcgctctctttaacactcactcttttattggatgaaa 382  Q
    |||||||| |||| ||||| |||||| |||||| || ||| |||||||||||||| |||||    
T  1107039 aatgttagcaacactctcttttgagcactctctctagcacccactcttttattgggtgaaa 1107099  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 331 - 382
Target Start/End: Original strand, 24748917 - 24748968
Alignment:
Q  331 aacattctctcttgagcgctctctttaacactcactcttttattggatgaaa 382  Q
    |||| ||||| |||||| |||||| |||||||||||||||||||||||||||    
T  24748917 aacactctcttttgagcactctctctaacactcactcttttattggatgaaa 24748968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 324 - 382
Target Start/End: Complemental strand, 46237223 - 46237165
Alignment:
Q  324 tgttagtaacattctctcttgagcgctctctttaacactcactcttttattggatgaaa 382  Q
    |||||| |||| ||||| |||||| |||||| || || |||||||||||||||||||||    
T  46237223 tgttagcaacactctcttttgagcactctctctagcaatcactcttttattggatgaaa 46237165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 349 - 382
Target Start/End: Complemental strand, 5452212 - 5452179
Alignment:
Q  349 ctctctttaacactcactcttttattggatgaaa 382  Q
    |||||||||||| |||||||||||||||||||||    
T  5452212 ctctctttaacattcactcttttattggatgaaa 5452179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 378
Target Start/End: Original strand, 27243041 - 27243102
Alignment:
Q  317 tgaggaatgttagtaacattctctcttgagcgctctctttaacactcactcttttattggat 378  Q
    ||||| ||| ||| |||| ||||| |||| | |||||| |||||||||||||||||||||||    
T  27243041 tgagggatgctagcaacactctcttttgaacactctctctaacactcactcttttattggat 27243102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 349 - 382
Target Start/End: Complemental strand, 46156776 - 46156743
Alignment:
Q  349 ctctctttaacactcactcttttattggatgaaa 382  Q
    |||||||||||||||||||||||||||| |||||    
T  46156776 ctctctttaacactcactcttttattgggtgaaa 46156743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 318 - 412
Target Start/End: Original strand, 54140887 - 54140977
Alignment:
Q  318 gaggaatgttagtaacattctctcttgagcgctctctttaacactcactcttttattggatgaaaacaaacaatatagaacctacactctgaaaa 412  Q
    |||||||| ||| |||| ||||| |||||| || ||| || ||||||||| ||||||||||||    || |||| ||||||||||||| ||||||    
T  54140887 gaggaatgctagcaacactctcttttgagcactttctctagcactcactcatttattggatga----aatcaatgtagaacctacactttgaaaa 54140977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 318 - 382
Target Start/End: Original strand, 10769719 - 10769783
Alignment:
Q  318 gaggaatgttagtaacattctctcttgagcgctctctttaacactcactcttttattggatgaaa 382  Q
    |||||||| || ||||| ||||| |||||| |||||| || |||| ||||||||||| |||||||    
T  10769719 gaggaatgctaataacactctcttttgagcactctctctagcacttactcttttatttgatgaaa 10769783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 317 - 381
Target Start/End: Original strand, 37600123 - 37600187
Alignment:
Q  317 tgaggaatgttagtaacattctctcttgagcgctctctttaacactcactcttttattggatgaa 381  Q
    ||||||||| ||| |||| ||||| |||||| |||||| || ||| |||||||||||||| ||||    
T  37600123 tgaggaatgctagcaacactctcttttgagcactctctctagcacccactcttttattggttgaa 37600187  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 319 - 376
Target Start/End: Original strand, 6263881 - 6263938
Alignment:
Q  319 aggaatgttagtaacattctctcttgagcgctctctttaacactcactcttttattgg 376  Q
    |||||||||||||||| ||||| |||||| |||||| || ||||||||| ||||||||    
T  6263881 aggaatgttagtaacactctcttttgagcactctctctatcactcactcctttattgg 6263938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 317 - 386
Target Start/End: Complemental strand, 26072290 - 26072221
Alignment:
Q  317 tgaggaatgttagtaacattctctcttgagcgctctctttaacactcactcttttattggatgaaaacaa 386  Q
    ||||||||| ||| |||| ||||| ||||||  ||||| || |||||||||||||||||| |||||||||    
T  26072290 tgaggaatgctagcaacactctcttttgagcattctctctagcactcactcttttattgggtgaaaacaa 26072221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 316 - 376
Target Start/End: Complemental strand, 4959466 - 4959406
Alignment:
Q  316 ttgaggaatgttagtaacattctctcttgagcgctctctttaacactcactcttttattgg 376  Q
    ||||||| || |||||||| ||||| |||||| |||||| || ||||||||||||||||||    
T  4959466 ttgaggagtgctagtaacactctcttttgagcactctctctagcactcactcttttattgg 4959406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 307 - 382
Target Start/End: Original strand, 17568685 - 17568760
Alignment:
Q  307 atataatttttgaggaatgttagtaacattctctcttgagcgctctctttaacactcactcttttattggatgaaa 382  Q
    ||||| |||| |||||||| ||| |||| ||||| |||||| |||||  || ||| ||||||||||||||||||||    
T  17568685 atatatttttcgaggaatgctagcaacactctcttttgagcactctccctagcacccactcttttattggatgaaa 17568760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 316 - 374
Target Start/End: Complemental strand, 42224776 - 42224718
Alignment:
Q  316 ttgaggaatgttagtaacattctctcttgagcgctctctttaacactcactcttttatt 374  Q
    |||||||||| ||| |||| ||||| |||||| |||||| || ||||||||||||||||    
T  42224776 ttgaggaatgctagcaacactctcttttgagcactctctctagcactcactcttttatt 42224718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 374
Target Start/End: Complemental strand, 34818373 - 34818316
Alignment:
Q  317 tgaggaatgttagtaacattctctcttgagcgctctctttaacactcactcttttatt 374  Q
    |||| |||| ||| |||||||||| |||||| |||||| ||||||||||| |||||||    
T  34818373 tgagaaatgctaggaacattctcttttgagcactctctctaacactcacttttttatt 34818316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 318 - 382
Target Start/End: Original strand, 4959275 - 4959339
Alignment:
Q  318 gaggaatgttagtaacattctctcttgagcgctctctttaacactcactcttttattggatgaaa 382  Q
    |||||||| ||| |||| ||||| |||||| |||||| ||| || |||||||||||||| |||||    
T  4959275 gaggaatgctagcaacactctcttttgagcactctctctaatacccactcttttattgggtgaaa 4959339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 322 - 374
Target Start/End: Complemental strand, 26227068 - 26227016
Alignment:
Q  322 aatgttagtaacattctctcttgagcgctctctttaacactcactcttttatt 374  Q
    |||||||| |||||||||| || ||| |||||||||||| ||||||| |||||    
T  26227068 aatgttagcaacattctcttttaagcactctctttaacaatcactctcttatt 26227016  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 318 - 378
Target Start/End: Original strand, 8914768 - 8914828
Alignment:
Q  318 gaggaatgttagtaacattctctcttgagcgctctctttaacactcactcttttattggat 378  Q
    |||||||| ||| |||| || || ||||||||||||| ||||||||||||||| |||||||    
T  8914768 gaggaatgctagcaacactcacttttgagcgctctctctaacactcactctttcattggat 8914828  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 318 - 382
Target Start/End: Complemental strand, 17354710 - 17354646
Alignment:
Q  318 gaggaatgttagtaacattctctcttgagcgctctctttaacactcactcttttattggatgaaa 382  Q
    |||||||| ||| |||| ||| | |||||| |||||| ||||||||| |||||||||||||||||    
T  17354710 gaggaatgctagcaacactcttttttgagcactctctctaacactcattcttttattggatgaaa 17354646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 322 - 378
Target Start/End: Original strand, 25428477 - 25428533
Alignment:
Q  322 aatgttagtaacattctctcttgagcgctctctttaacactcactcttttattggat 378  Q
    |||| ||| |||| ||||| |||||| ||||||||| ||||||||||||||||||||    
T  25428477 aatgatagcaacactctcttttgagcactctctttagcactcactcttttattggat 25428533  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 307 - 382
Target Start/End: Complemental strand, 14759840 - 14759765
Alignment:
Q  307 atataatttttgaggaatgttagtaacattctctcttgagcgctctctttaacactcactcttttattggatgaaa 382  Q
    ||||| |||| |||||||| ||| |||| ||||| |||||| |||||  || ||| ||||||||||||||||||||    
T  14759840 atatatttttcgaggaatgctagcaacactctcttttgagcactctccctagcacccactcttttattggatgaaa 14759765  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 318 - 376
Target Start/End: Complemental strand, 27888467 - 27888409
Alignment:
Q  318 gaggaatgttagtaacattctctcttgagcgctctctttaacactcactcttttattgg 376  Q
    |||||||| ||| |||| ||||| |||||| |||||| ||||||||||||| |||||||    
T  27888467 gaggaatgctagcaacactctcttttgagcactctctctaacactcactctcttattgg 27888409  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 382
Target Start/End: Original strand, 19840878 - 19840943
Alignment:
Q  317 tgaggaatgttagtaacattctctcttgagcgctctctttaacactcactcttttattggatgaaa 382  Q
    ||||||||| ||| |||| ||| | |||||| |||||| || |||||||||||||||||| |||||    
T  19840878 tgaggaatgctagcaacactctattttgagcactctctctagcactcactcttttattgggtgaaa 19840943  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 350 - 382
Target Start/End: Complemental strand, 31502615 - 31502583
Alignment:
Q  350 tctctttaacactcactcttttattggatgaaa 382  Q
    ||||| |||||||||||||||||||||||||||    
T  31502615 tctctctaacactcactcttttattggatgaaa 31502583  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 331 - 375
Target Start/End: Complemental strand, 39254255 - 39254211
Alignment:
Q  331 aacattctctcttgagcgctctctttaacactcactcttttattg 375  Q
    |||||||||| |||| | |||||||||||||||||||| ||||||    
T  39254255 aacattctcttttgaacactctctttaacactcactctcttattg 39254211  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 315 - 375
Target Start/End: Complemental strand, 42887814 - 42887754
Alignment:
Q  315 tttgaggaatgttagtaacattctctcttgagcgctctctttaacactcactcttttattg 375  Q
    |||||| |||| |||||| ||||||| |||| | ||||||||| ||||| |||||||||||    
T  42887814 tttgagaaatgctagtaaaattctcttttgatcactctctttagcactcgctcttttattg 42887754  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 317 - 381
Target Start/End: Original strand, 19090208 - 19090272
Alignment:
Q  317 tgaggaatgttagtaacattctctcttgagcgctctctttaacactcactcttttattggatgaa 381  Q
    ||||||||| ||| |||| ||||| |||||| |||||| || |||||||||||||||||| ||||    
T  19090208 tgaggaatgctagcaacactctcttttgagcactctctctagcactcactcttttattggttgaa 19090272  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 318 - 376
Target Start/End: Complemental strand, 10061045 - 10060987
Alignment:
Q  318 gaggaatgttagtaacattctctcttgagcgctctctttaacactcactcttttattgg 376  Q
    ||||||| |||| |||| ||||| |||||| |||||| ||||||||||| |||||||||    
T  10061045 gaggaatattagcaacactctcttttgagcactctctctaacactcacttttttattgg 10060987  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 349 - 382
Target Start/End: Original strand, 34905364 - 34905397
Alignment:
Q  349 ctctctttaacactcactcttttattggatgaaa 382  Q
    |||||| |||||||||||||||||||||||||||    
T  34905364 ctctctctaacactcactcttttattggatgaaa 34905397  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 318 - 376
Target Start/End: Complemental strand, 11430626 - 11430568
Alignment:
Q  318 gaggaatgttagtaacattctctcttgagcgctctctttaacactcactcttttattgg 376  Q
    |||||||| ||| |||| ||||| |||||| |||||| || ||||||||||||||||||    
T  11430626 gaggaatgctagcaacactctcttttgagcactctctctagcactcactcttttattgg 11430568  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 382
Target Start/End: Complemental strand, 43851223 - 43851154
Alignment:
Q  313 tttttgaggaatgttagtaacattctctcttgagcgctctctttaacactcactcttttattggatgaaa 382  Q
    ||||||||||||||||| |||| ||||| || ||||| |||| ||  |||||||| |||||||| |||||    
T  43851223 tttttgaggaatgttagcaacactctcttttaagcgcactctctagtactcactcatttattgggtgaaa 43851154  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 318 - 382
Target Start/End: Original strand, 13388331 - 13388395
Alignment:
Q  318 gaggaatgttagtaacattctctcttgagcgctctctttaacactcactcttttattggatgaaa 382  Q
    |||||||| ||| |||| ||||| ||||   |||||| ||||||||||| |||||||||||||||    
T  13388331 gaggaatgctagcaacactctcttttgaatactctctctaacactcacttttttattggatgaaa 13388395  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 318 - 378
Target Start/End: Complemental strand, 50773294 - 50773234
Alignment:
Q  318 gaggaatgttagtaacattctctcttgagcgctctctttaacactcactcttttattggat 378  Q
    |||| ||||||| |||| ||| | ||||  ||||||| |||||||||||||||||||||||    
T  50773294 gagggatgttagcaacactctattttgactgctctctctaacactcactcttttattggat 50773234  T

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