View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2246_low_9 (Length: 356)
Name: NF2246_low_9
Description: NF2246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2246_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 18 - 348
Target Start/End: Complemental strand, 25251516 - 25251186
Alignment:
| Q |
18 |
tatccaataccgctggagtactggctggtgttcttggaacagcagcaacaggttacattctgcaacatggtaagtatttgttcttcatatttattcttac |
117 |
Q |
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| T |
25251516 |
tatccaataccgctggagtactggctggtgttcttggaacagcagcaacaggttacattctgcaacatggtaagtatttgttcttcatatttattcttac |
25251417 |
T |
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| Q |
118 |
taaatgttaatggtcaattatctcggaaacttaaaatattacgtgaagccgtcaataattttattatatctcttaatggtgaagaatgagtatatatttc |
217 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25251416 |
taaatgttaatggtcaattatctcagaaacttaaaatattacgtgaagccgtcaataattttattatatctcttaatggtgaagaatgagtatatatttc |
25251317 |
T |
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| Q |
218 |
tactgtcttaaatctgaaaagtatcaatttgatattgatagtttggcaaagaagcattattcgttccacctaatacttcaatgaaatcttatctttggaa |
317 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25251316 |
tactgtcttaaatctgaaaagtatcaatttggtattgatagtttggcaaagaagcattattcgttccacctaatacttcaatgaaatcttatctttggaa |
25251217 |
T |
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| Q |
318 |
caactgtatgacgccattcattctctctgct |
348 |
Q |
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|||| |||||||||||||||||||||||||| |
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| T |
25251216 |
caaccgtatgacgccattcattctctctgct |
25251186 |
T |
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