View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2247_high_3 (Length: 681)

Name: NF2247_high_3
Description: NF2247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2247_high_3
NF2247_high_3
[»] chr5 (27 HSPs)
chr5 (198-643)||(26619860-26620307)
chr5 (13-199)||(12278860-12279047)
chr5 (13-208)||(31680339-31680534)
chr5 (13-199)||(17332551-17332738)
chr5 (13-192)||(37254628-37254808)
chr5 (25-199)||(31501728-31501903)
chr5 (13-165)||(33430335-33430488)
chr5 (16-179)||(10033927-10034091)
chr5 (13-179)||(13817977-13818144)
chr5 (13-178)||(26283318-26283484)
chr5 (16-179)||(39657509-39657673)
chr5 (14-177)||(1776377-1776541)
chr5 (13-200)||(36291350-36291538)
chr5 (13-179)||(36293621-36293788)
chr5 (13-179)||(39434696-39434863)
chr5 (13-161)||(16155015-16155164)
chr5 (13-177)||(19985941-19986106)
chr5 (24-149)||(16333887-16334013)
chr5 (29-179)||(3155647-3155798)
chr5 (13-160)||(43068896-43069044)
chr5 (54-166)||(28801300-28801415)
chr5 (149-199)||(26543902-26543952)
chr5 (130-197)||(202621-202688)
chr5 (436-467)||(11925995-11926026)
chr5 (13-47)||(28801439-28801473)
chr5 (167-199)||(4307238-4307270)
chr5 (167-199)||(15917017-15917049)
[»] chr7 (22 HSPs)
chr7 (13-190)||(34389056-34389234)
chr7 (13-198)||(37002144-37002330)
chr7 (13-200)||(26624724-26624913)
chr7 (13-199)||(43184468-43184655)
chr7 (15-191)||(8867733-8867910)
chr7 (15-178)||(14777109-14777273)
chr7 (13-170)||(35090177-35090335)
chr7 (16-179)||(5555487-5555651)
chr7 (13-199)||(33685544-33685731)
chr7 (16-176)||(3114099-3114260)
chr7 (13-199)||(7002705-7002892)
chr7 (13-199)||(7048576-7048763)
chr7 (13-179)||(36630816-36630983)
chr7 (13-179)||(8394125-8394292)
chr7 (13-161)||(36658199-36658348)
chr7 (13-160)||(40920003-40920151)
chr7 (14-156)||(38638237-38638380)
chr7 (400-485)||(2654219-2654304)
chr7 (54-113)||(10868514-10868575)
chr7 (134-191)||(10876829-10876886)
chr7 (143-192)||(37966614-37966663)
chr7 (198-270)||(2654433-2654505)
[»] chr3 (24 HSPs)
chr3 (13-192)||(45182968-45183148)
chr3 (13-200)||(6930894-6931082)
chr3 (13-198)||(33040934-33041120)
chr3 (13-192)||(11018212-11018392)
chr3 (13-196)||(27935161-27935345)
chr3 (29-198)||(45335856-45336025)
chr3 (13-178)||(22968444-22968610)
chr3 (29-200)||(19565517-19565689)
chr3 (13-179)||(19390146-19390313)
chr3 (14-178)||(6269427-6269592)
chr3 (13-192)||(6503569-6503749)
chr3 (13-179)||(34084122-34084289)
chr3 (13-178)||(39771791-39771957)
chr3 (13-166)||(40081741-40081893)
chr3 (13-191)||(35514254-35514429)
chr3 (54-157)||(5135291-5135397)
chr3 (142-200)||(6890977-6891035)
chr3 (130-191)||(5354697-5354758)
chr3 (404-470)||(19585303-19585369)
chr3 (131-179)||(22922157-22922205)
chr3 (13-61)||(22922214-22922262)
chr3 (404-470)||(12298022-12298088)
chr3 (13-47)||(5135421-5135455)
chr3 (19-47)||(51262115-51262143)
[»] chr6 (14 HSPs)
chr6 (13-199)||(28996710-28996897)
chr6 (13-179)||(18339106-18339273)
chr6 (13-178)||(398618-398784)
chr6 (29-200)||(29743262-29743434)
chr6 (16-179)||(13837821-13837985)
chr6 (16-179)||(34948761-34948925)
chr6 (13-163)||(33229336-33229487)
chr6 (84-192)||(31028435-31028544)
chr6 (95-192)||(24697899-24697997)
chr6 (143-199)||(13646997-13647053)
chr6 (143-199)||(34385519-34385575)
chr6 (142-191)||(21149331-21149380)
chr6 (142-192)||(2753337-2753387)
chr6 (19-47)||(11971095-11971123)
[»] chr2 (25 HSPs)
chr2 (13-199)||(45418563-45418750)
chr2 (13-198)||(44084603-44084789)
chr2 (14-199)||(8147331-8147518)
chr2 (14-198)||(770975-771165)
chr2 (13-176)||(41251634-41251798)
chr2 (24-179)||(42439986-42440142)
chr2 (13-178)||(6403804-6403970)
chr2 (16-179)||(32127144-32127308)
chr2 (16-179)||(35962715-35962879)
chr2 (13-161)||(12756837-12756986)
chr2 (13-179)||(17445041-17445206)
chr2 (13-179)||(31581622-31581789)
chr2 (16-192)||(8059336-8059513)
chr2 (16-176)||(16405603-16405764)
chr2 (16-173)||(18981622-18981780)
chr2 (43-179)||(2958131-2958267)
chr2 (24-154)||(2285887-2286018)
chr2 (66-199)||(26237937-26238071)
chr2 (54-199)||(4555250-4555397)
chr2 (13-113)||(26162702-26162799)
chr2 (149-200)||(34523219-34523270)
chr2 (54-170)||(7072589-7072710)
chr2 (413-479)||(27034840-27034906)
chr2 (101-159)||(34905969-34906028)
chr2 (19-47)||(31392932-31392960)
[»] chr4 (45 HSPs)
chr4 (13-202)||(3292896-3293086)
chr4 (13-198)||(30216742-30216928)
chr4 (13-199)||(6690235-6690422)
chr4 (15-199)||(50205079-50205264)
chr4 (13-192)||(43143584-43143764)
chr4 (13-192)||(42333776-42333956)
chr4 (13-191)||(48989316-48989495)
chr4 (13-178)||(20129311-20129477)
chr4 (13-179)||(25930708-25930875)
chr4 (13-178)||(13012189-13012355)
chr4 (13-178)||(47500774-47500940)
chr4 (31-199)||(10352902-10353071)
chr4 (13-199)||(28877250-28877437)
chr4 (13-179)||(36382346-36382512)
chr4 (13-178)||(26439279-26439445)
chr4 (13-178)||(34407284-34407450)
chr4 (13-162)||(44156668-44156818)
chr4 (29-199)||(30077647-30077817)
chr4 (13-178)||(43355905-43356071)
chr4 (16-176)||(29319708-29319869)
chr4 (26-197)||(26448035-26448206)
chr4 (13-192)||(29995983-29996163)
chr4 (13-155)||(35545977-35546120)
chr4 (16-166)||(40529028-40529179)
chr4 (13-169)||(17511233-17511391)
chr4 (13-113)||(6235587-6235687)
chr4 (54-190)||(30109945-30110084)
chr4 (25-199)||(13392893-13393057)
chr4 (25-199)||(13396032-13396196)
chr4 (54-167)||(48129978-48130087)
chr4 (13-144)||(1817752-1817884)
chr4 (142-200)||(49908782-49908840)
chr4 (142-199)||(5517494-5517551)
chr4 (138-192)||(7769315-7769369)
chr4 (143-199)||(6212029-6212085)
chr4 (80-191)||(45194164-45194276)
chr4 (143-197)||(17554978-17555032)
chr4 (95-200)||(27363340-27363446)
chr4 (413-479)||(35088800-35088866)
chr4 (142-192)||(50720476-50720526)
chr4 (143-199)||(12680193-12680249)
chr4 (87-154)||(6254569-6254637)
chr4 (13-47)||(30110108-30110142)
chr4 (13-47)||(48130111-48130145)
chr4 (19-47)||(4325547-4325575)
[»] chr8 (16 HSPs)
chr8 (13-199)||(23402088-23402275)
chr8 (13-192)||(16788025-16788205)
chr8 (13-201)||(34136825-34137014)
chr8 (13-192)||(4403995-4404175)
chr8 (13-179)||(29728386-29728553)
chr8 (13-199)||(36408531-36408718)
chr8 (13-178)||(39914516-39914681)
chr8 (16-179)||(15838286-15838449)
chr8 (13-165)||(3648794-3648947)
chr8 (13-157)||(9877242-9877387)
chr8 (25-198)||(2729208-2729382)
chr8 (54-163)||(3435285-3435397)
chr8 (13-105)||(42231012-42231104)
chr8 (130-195)||(10397158-10397223)
chr8 (13-47)||(40470475-40470509)
chr8 (87-156)||(40470567-40470637)
[»] scaffold0502 (1 HSPs)
scaffold0502 (13-179)||(5230-5397)
[»] scaffold0154 (1 HSPs)
scaffold0154 (13-199)||(31460-31647)
[»] chr1 (19 HSPs)
chr1 (13-192)||(35907539-35907719)
chr1 (14-199)||(17445293-17445479)
chr1 (13-178)||(26144256-26144422)
chr1 (13-179)||(32982056-32982223)
chr1 (13-192)||(3828971-3829150)
chr1 (16-175)||(7433449-7433609)
chr1 (13-179)||(42310941-42311108)
chr1 (13-192)||(321377-321557)
chr1 (54-200)||(41972314-41972462)
chr1 (54-200)||(33489666-33489815)
chr1 (142-198)||(31866958-31867014)
chr1 (74-171)||(23313246-23313345)
chr1 (143-199)||(44352614-44352670)
chr1 (404-470)||(52779302-52779368)
chr1 (130-199)||(48901223-48901291)
chr1 (13-47)||(33489839-33489873)
chr1 (13-47)||(41972256-41972290)
chr1 (19-47)||(25017522-25017550)
chr1 (19-47)||(32379867-32379895)
[»] scaffold0002 (1 HSPs)
scaffold0002 (13-178)||(480457-480623)
[»] scaffold2142 (1 HSPs)
scaffold2142 (13-178)||(523-689)
[»] scaffold0041 (1 HSPs)
scaffold0041 (13-160)||(52944-53092)
[»] scaffold0069 (1 HSPs)
scaffold0069 (13-179)||(17842-18009)
[»] scaffold0769 (1 HSPs)
scaffold0769 (149-197)||(1259-1307)
[»] scaffold0012 (1 HSPs)
scaffold0012 (149-186)||(194021-194058)
[»] scaffold0329 (1 HSPs)
scaffold0329 (404-470)||(12631-12697)


Alignment Details
Target: chr5 (Bit Score: 401; Significance: 0; HSPs: 27)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 198 - 643
Target Start/End: Complemental strand, 26620307 - 26619860
Alignment:
Q  198 tggccttaaacaagccagtagaaaatgatatgaaagattaacttctttgcttgttcaacatgaatacacacaagctgcatcagatcattctttattcacg 297  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||    
T  26620307 tggccttaaacaagcaagtagaaaatgatatgaaagattaacttctttgcttgttcaacatgaatacacacaagctgcatcaaatcattctttattcgcg 26620208  T
Q  298 aaaaccaccctttgattattcactcttttactggtttatgttgatgatttgattctggctggaaactccctctccgagttttctttcataaaaagtgttc 397  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| ||||    
T  26620207 aaaaccaccctttgattattcactcttttactggtttatgttgatgatgtgattctggctggaaactccctctccaagttttctttcataaaaagagttc 26620108  T
Q  398 tccacacttcatttcaaatcaaggatttaggtcaactcaaatattttcttggtattgaagtagctcattccaaagctggcatctccatttgttagaaaaa 497  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26620107 tccacgcttcatttcaaatcaaggatttaggtcaactcaaatattttcttggtattgaagtagctcattccaaagctggcatctccatttgttagaaaaa 26620008  T
Q  498 atattgcttagatcttctttctgagtcaggccttcttgactctaaaccagtttccacccgatcagactgattctctgagagtcctaagatatcttatgaa 597  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  26620007 atattgcttagatcttctttctgagtcaggccttcttgactctaaaccagtttccacccgatcagactgattctctgagagtcctaagatatctcatgaa 26619908  T
Q  598 ttctcctgggtgtgg--tcttctaccactcatcttttaggcttttctg 643  Q
    |||||||||||||||  |||||||||||||||||||||||||| ||||    
T  26619907 ttctcctgggtgtggcctcttctaccactcatcttttaggcttctctg 26619860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 148; E-Value: 9e-78
Query Start/End: Original strand, 13 - 199
Target Start/End: Original strand, 12278860 - 12279047
Alignment:
Q  13 gagatgaacctgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtctgttaa 112  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  12278860 gagatgaacctgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaa 12278959  T
Q  113 ttag-cttttggttaggtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccacccctg 199  Q
    || | |||| |||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| ||||||    
T  12278960 ttggcctttgggttgggtctaatgtgcaaaaattatcgatcgagtccgggcgaccgcccgggatcgccgggcggtgaaaccgcccctg 12279047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 145; E-Value: 6e-76
Query Start/End: Original strand, 13 - 208
Target Start/End: Complemental strand, 31680534 - 31680339
Alignment:
Q  13 gagatgaacctgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtctgttaa 112  Q
    |||||||||| |||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||    
T  31680534 gagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcatgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaa 31680435  T
Q  113 ttagctttt-ggttaggtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccacccctggccttaaac 208  Q
    || |||||| |||| ||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||    
T  31680434 ttggcttttgggttgggtctaatgcggaaaaattatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccgcccct-gccttaaac 31680339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 140; E-Value: 6e-73
Query Start/End: Original strand, 13 - 199
Target Start/End: Original strand, 17332551 - 17332738
Alignment:
Q  13 gagatgaacctgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtctgttaa 112  Q
    |||||||| | |||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||    
T  17332551 gagatgaatccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgaaaattttcagattgcccaaatttttctttttgtaagtgtgttaa 17332650  T
Q  113 ttagctttt-ggttaggtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccacccctg 199  Q
    || |||||| |||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||    
T  17332651 ttggcttttgggttgggtctaatatgcaaaaattatcgatcgagcccgggcgaacgcccggggtcgccgggcggtgaaaccgcccctg 17332738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 133; E-Value: 8e-69
Query Start/End: Original strand, 13 - 192
Target Start/End: Complemental strand, 37254808 - 37254628
Alignment:
Q  13 gagatgaacctgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtctgttaa 112  Q
    |||||||||| ||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  37254808 gagatgaacccgtcaataatgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaa 37254709  T
Q  113 ttagctttt-ggttaggtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaacc 192  Q
    ||  ||||| |||| ||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |||||||||||    
T  37254708 ttgacttttgggttgggtctaatgtgcaaaaattatcgatcgagcctgggcgaccgcctggggtcgccgagcggtgaaacc 37254628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 25 - 199
Target Start/End: Original strand, 31501728 - 31501903
Alignment:
Q  25 tcaatagtgtgctaaataaaattccaagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtctgttaattagctttt-gg 123  Q
    ||||||||||||||||||||||| | ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| |||||| ||    
T  31501728 tcaatagtgtgctaaataaaatttcgagacctatttgcgtgcgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattggcttttggg 31501827  T
Q  124 ttaggtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccacccctg 199  Q
    || |||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| ||||||    
T  31501828 ttgggtctaatgtgcaaaaattatcgatcgagcccgggcaatcgcccggggtcgccgggcggtgaaaccgcccctg 31501903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 13 - 165
Target Start/End: Complemental strand, 33430488 - 33430335
Alignment:
Q  13 gagatgaacctgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtctgttaa 112  Q
    |||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  33430488 gagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaa 33430389  T
Q  113 ttagctttt-ggttaggtctaatgtgcaaaaattatcgatcgagcccgggcgac 165  Q
    || |||||| |||| ||||||||| |||||||||||||||||||||||||||||    
T  33430388 ttggcttttgggttgggtctaatgcgcaaaaattatcgatcgagcccgggcgac 33430335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 16 - 179
Target Start/End: Complemental strand, 10034091 - 10033927
Alignment:
Q  16 atgaacctgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtctgttaatta 115  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | |||||||      
T  10034091 atgaacccgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaatgg 10033992  T
Q  116 gctttt-ggttaggtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgcc 179  Q
    |||||| ||||  ||||||||||||||||||||||||||||||||||||| || |||||||||||    
T  10033991 gcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgatcgtccggggtcgcc 10033927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 13 - 179
Target Start/End: Complemental strand, 13818144 - 13817977
Alignment:
Q  13 gagatgaacctgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtctgttaa 112  Q
    ||||||| || ||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | ||||||    
T  13818144 gagatgagcccgtcaatagtgtgctaaataaatttccaagacctatttgcgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaa 13818045  T
Q  113 ttagctttt-ggttaggtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgcc 179  Q
    |  |||||| ||||  |||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  13818044 tgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgagcgaccgcccggggtcgcc 13817977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 13 - 178
Target Start/End: Original strand, 26283318 - 26283484
Alignment:
Q  13 gagatgaacctgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtctgttaa 112  Q
    |||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| ||| | ||||||    
T  26283318 gagatgaaactgtcaatagtgtgccaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttataaatgtgttaa 26283417  T
Q  113 ttagc-ttttggttaggtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgc 178  Q
    | | | ||||||||  |||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  26283418 tgaactttttggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccgaggtcgc 26283484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 16 - 179
Target Start/End: Original strand, 39657509 - 39657673
Alignment:
Q  16 atgaacctgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtctgttaatta 115  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | ||||||| |    
T  39657509 atgaacccgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaatga 39657608  T
Q  116 gctttt-ggttaggtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgcc 179  Q
    |||||| ||||  ||||||||||||||||||||| ||||||||||  |||||| | |||||||||    
T  39657609 gcttttgggttgagtctaatgtgcaaaaattatcaatcgagcccgaacgaccgtctggggtcgcc 39657673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 14 - 177
Target Start/End: Original strand, 1776377 - 1776541
Alignment:
Q  14 agatgaacctgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtctgttaat 113  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| | |||||||    
T  1776377 agatgaacctgtcgatagtgtgctaaataaaattccaagacctatttgcgtgtgacaattttcaaattgcccaaatttttctttttgtaaatgtgttaat 1776476  T
Q  114 -tagcttttggttaggtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcg 177  Q
      |  ||||||||   | |||||| ||||||||||||||||||||||||||||||||||||||||    
T  1776477 ggactttttggttgactttaatgtacaaaaattatcgatcgagcccgggcgaccgcccggggtcg 1776541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 13 - 200
Target Start/End: Complemental strand, 36291538 - 36291350
Alignment:
Q  13 gagatgaacctgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtctgttaa 112  Q
    |||||||||| |||||||||||| ||||||||||||  ||||||||||| |||| | |||||| ||||||||||||||||||||||||||| | ||||||    
T  36291538 gagatgaacccgtcaatagtgtgttaaataaaattctgagacctatttgtgtgtaataattttgagattgcccaaatttttctttttgtaaatgtgttaa 36291439  T
Q  113 ttagctttt-ggttaggtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccacccctgg 200  Q
    | | ||||| |||||| ||||||||||||||||||| |||||| ||||| ||||||||||| |||| |||||||||||||| |||||||    
T  36291438 tgaacttttaggttagatctaatgtgcaaaaattattgatcgaacccggacgaccgcccggagtcggcgggcggtgaaaccgcccctgg 36291350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 13 - 179
Target Start/End: Original strand, 36293621 - 36293788
Alignment:
Q  13 gagatgaacctgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtctgttaa 112  Q
    |||||||| |||| |||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| | ||||||    
T  36293621 gagatgaaactgtaaatagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaa 36293720  T
Q  113 ttagctttt-ggttaggtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgcc 179  Q
    |  |||||| ||||  ||||||||| |||||||||||||||||| |||| ||||||| ||||||||||    
T  36293721 tgggcttttgggttgagtctaatgtacaaaaattatcgatcgagtccggacgaccgctcggggtcgcc 36293788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 13 - 179
Target Start/End: Complemental strand, 39434863 - 39434696
Alignment:
Q  13 gagatgaacctgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtctgttaa 112  Q
    |||||||| ||||||||||||||||||||||||||| ||||||||||| | ||||| ||||||||||||||||||||||||| |||||||| | ||||||    
T  39434863 gagatgaaactgtcaatagtgtgctaaataaaattcaaagacctatttacatgtgacaattttcagattgcccaaatttttcattttgtaaatgtgttaa 39434764  T
Q  113 ttagctttt-ggttaggtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgcc 179  Q
    |  |||||| ||||  |||||||||| |||||||||||||||||||||||||||||||| ||||||||    
T  39434763 tgggcttttgggttgagtctaatgtgaaaaaattatcgatcgagcccgggcgaccgcccagggtcgcc 39434696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 13 - 161
Target Start/End: Complemental strand, 16155164 - 16155015
Alignment:
Q  13 gagatgaacctgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtctgttaa 112  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| ||| | ||||||    
T  16155164 gagatgaatctgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgacaattttcagattgcctaaatttttctttttataaatgtgttaa 16155065  T
Q  113 ttagctttt-ggttaggtctaatgtgcaaaaattatcgatcgagcccggg 161  Q
    |  |||||| ||||  ||||||||||||||||||||||||||||||||||    
T  16155064 tgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccggg 16155015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 13 - 177
Target Start/End: Complemental strand, 19986106 - 19985941
Alignment:
Q  13 gagatgaacctgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtctgttaa 112  Q
    ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |||||| ||||| ||||||||||||||||||||| | || |||    
T  19986106 gagatgaacctgtcaatagtgtgttaaataaaatttcaagacctatttgcgtgtgataatttttagattacccaaatttttctttttgtaaatgtgctaa 19986007  T
Q  113 ttagctttt-ggttaggtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcg 177  Q
    |   ||||| ||||   |||||||||||||||||||||||||||| ||| |||||||||| |||||    
T  19986006 tggacttttgggttgaatctaatgtgcaaaaattatcgatcgagctcggacgaccgcccgaggtcg 19985941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 24 - 149
Target Start/End: Original strand, 16333887 - 16334013
Alignment:
Q  24 gtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtctgttaattagctttt-g 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | |||||||  |||||| |    
T  16333887 gtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaatgggcttttgg 16333986  T
Q  123 gttaggtctaatgtgcaaaaattatcg 149  Q
    |||   |||||||||||||||||||||    
T  16333987 gttgaatctaatgtgcaaaaattatcg 16334013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 29 - 179
Target Start/End: Original strand, 3155647 - 3155798
Alignment:
Q  29 tagtgtgctaaataaaattccaagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtctgttaattagctttt-ggttag 127  Q
    ||||||||||||||||||||||||| |||||||||||||| ||||||||||||| |||||||||||||||| ||| | |||||||   ||||| ||||      
T  3155647 tagtgtgctaaataaaattccaagatctatttgcgtgtgacaattttcagattgtccaaatttttctttttataaatgtgttaatggacttttaggttga 3155746  T
Q  128 gtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgcc 179  Q
    ||| |||||||||||||||| ||||||||||| ||||||||||||| |||||    
T  3155747 gtcgaatgtgcaaaaattattgatcgagcccgagcgaccgcccgggatcgcc 3155798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 13 - 160
Target Start/End: Complemental strand, 43069044 - 43068896
Alignment:
Q  13 gagatgaacctgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtctgttaa 112  Q
    |||||||| | | |||||||||||||||||||||||| |||| ||||| | ||| |||||||||||||||||||||||||||||||||||| | ||||||    
T  43069044 gagatgaatccggcaatagtgtgctaaataaaattccgagacttatttacatgtaagaattttcagattgcccaaatttttctttttgtaaatgtgttaa 43068945  T
Q  113 ttagctttt-ggttaggtctaatgtgcaaaaattatcgatcgagcccgg 160  Q
    |   ||||| |||| ||||||||||| ||||||||| ||||||||||||    
T  43068944 tggacttttgggttgggtctaatgtgaaaaaattattgatcgagcccgg 43068896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 54 - 166
Target Start/End: Complemental strand, 28801415 - 28801300
Alignment:
Q  54 cctatttgcgtgtgagaattttcagattg--cccaaatttttctttttgtaagtctgttaattagcttttggttagg-tctaatgtgcaaaaattatcga 150  Q
    |||||||||||||||||||||||| |||   ||||||||||||||||||||||| |||||||  |||||||||| || ||||||||||||||||||||||    
T  28801415 cctatttgcgtgtgagaattttcatatttttcccaaatttttctttttgtaagtgtgttaatgggcttttggtttggatctaatgtgcaaaaattatcga 28801316  T
Q  151 tcgagcccgggcgacc 166  Q
    ||||||| ||||||||    
T  28801315 tcgagccagggcgacc 28801300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 149 - 199
Target Start/End: Original strand, 26543902 - 26543952
Alignment:
Q  149 gatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccacccctg 199  Q
    |||||||||||||||||||||||||||||||||||||| ||||| ||||||    
T  26543902 gatcgagcccgggcgaccgcccggggtcgccgggcggtaaaaccgcccctg 26543952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 130 - 197
Target Start/End: Complemental strand, 202688 - 202621
Alignment:
Q  130 ctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccacccc 197  Q
    ||||||| || |||||||||||||||||||||||||| ||  |||||| |||||||||||||| ||||    
T  202688 ctaatgtacacaaattatcgatcgagcccgggcgaccacctagggtcgtcgggcggtgaaaccgcccc 202621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 436 - 467
Target Start/End: Original strand, 11925995 - 11926026
Alignment:
Q  436 aaatattttcttggtattgaagtagctcattc 467  Q
    ||||||||||||||||||||||||||||||||    
T  11925995 aaatattttcttggtattgaagtagctcattc 11926026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 13 - 47
Target Start/End: Complemental strand, 28801473 - 28801439
Alignment:
Q  13 gagatgaacctgtcaatagtgtgctaaataaaatt 47  Q
    ||||||||||||||||||||| |||||||||||||    
T  28801473 gagatgaacctgtcaatagtgagctaaataaaatt 28801439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 167 - 199
Target Start/End: Original strand, 4307238 - 4307270
Alignment:
Q  167 gcccggggtcgccgggcggtgaaaccacccctg 199  Q
    |||||||||||||||||||||||||| ||||||    
T  4307238 gcccggggtcgccgggcggtgaaaccgcccctg 4307270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 167 - 199
Target Start/End: Complemental strand, 15917049 - 15917017
Alignment:
Q  167 gcccggggtcgccgggcggtgaaaccacccctg 199  Q
    |||||||||||||||||||||||||| ||||||    
T  15917049 gcccggggtcgccgggcggtgaaaccgcccctg 15917017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 147; Significance: 4e-77; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 147; E-Value: 4e-77
Query Start/End: Original strand, 13 - 190
Target Start/End: Original strand, 34389056 - 34389234
Alignment:
Q  13 gagatgaacctgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtctgttaa 112  Q
    |||||||||| ||| ||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  34389056 gagatgaacccgtcgataatgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaa 34389155  T
Q  113 ttagctttt-ggttaggtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaa 190  Q
    ||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34389156 ttagcttttgggttgggtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaa 34389234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 143; E-Value: 9e-75
Query Start/End: Original strand, 13 - 198
Target Start/End: Original strand, 37002144 - 37002330
Alignment:
Q  13 gagatgaacctgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtctgttaa 112  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  37002144 gagatgaacccgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaa 37002243  T
Q  113 ttagcttttgg-ttaggtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccacccct 198  Q
    ||  ||||||| || ||||||||||||||||||||||||||||| |||  ||||||||||||||||||||||||||||||| |||||    
T  37002244 ttgacttttggattgggtctaatgtgcaaaaattatcgatcgagaccgaacgaccgcccggggtcgccgggcggtgaaaccgcccct 37002330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 138; E-Value: 9e-72
Query Start/End: Original strand, 13 - 200
Target Start/End: Complemental strand, 26624913 - 26624724
Alignment:
Q  13 gagatgaacctgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtctgttaa 112  Q
    |||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  26624913 gagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaa 26624814  T
Q  113 ttagcttttgg-ttaggtctaatgtgcaaaaattatcg-atcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccacccctgg 200  Q
    ||| ||||||| || |||||||| |||||||||||||| ||||||||| |||||||||||||||| |||||||||||||||| |||||||    
T  26624813 ttaacttttggattgggtctaatatgcaaaaattatcgaatcgagcccaggcgaccgcccggggttgccgggcggtgaaaccgcccctgg 26624724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 128; E-Value: 8e-66
Query Start/End: Original strand, 13 - 199
Target Start/End: Original strand, 43184468 - 43184655
Alignment:
Q  13 gagatgaacctgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtctgttaa 112  Q
    |||||||||| |||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  43184468 gagatgaacccgtcaatagtgtgctaaataaaattcagagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtatgttaa 43184567  T
Q  113 ttagctttt-ggttaggtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccacccctg 199  Q
    || |||||| ||||| |||| ||| | ||||||||||||||||||||| ||||||||||||  |||||||||||||||||| ||||||    
T  43184568 ttggcttttgggttaagtctgatgcgtaaaaattatcgatcgagcccgagcgaccgcccggaatcgccgggcggtgaaaccgcccctg 43184655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 15 - 191
Target Start/End: Original strand, 8867733 - 8867910
Alignment:
Q  15 gatgaacctgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtctgttaatt 114  Q
    |||||| | |||||||||||||||||||||||||| |||||||||||||||||| ||||||| |||||||||||||||||||||||||| | | ||||||    
T  8867733 gatgaatccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgaaaattttccgattgcccaaatttttctttttgtaaatgtattaatt 8867832  T
Q  115 agcttttgg-ttaggtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaac 191  Q
     |||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8867833 ggcttttggattgggtctaatatgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaac 8867910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 15 - 178
Target Start/End: Original strand, 14777109 - 14777273
Alignment:
Q  15 gatgaacctgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtctgttaatt 114  Q
    |||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| | |||||||     
T  14777109 gatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaatg 14777208  T
Q  115 agctttt-ggttaggtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgc 178  Q
    ||||||| ||||  |||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  14777209 agcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccgggatcgc 14777273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 13 - 170
Target Start/End: Complemental strand, 35090335 - 35090177
Alignment:
Q  13 gagatgaacctgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtctgttaa 112  Q
    |||||||| | |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||    
T  35090335 gagatgaatccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattacccaaatttttctttttgtaagtgtgttaa 35090236  T
Q  113 ttagctttt-ggttaggtctaatgtgcaaaaattatcgatcgagcccgggcgaccgccc 170  Q
    || |||||| |||| ||||||||||||||||||||| ||||||||||||||||||||||    
T  35090235 ttggcttttgggttgggtctaatgtgcaaaaattattgatcgagcccgggcgaccgccc 35090177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 16 - 179
Target Start/End: Complemental strand, 5555651 - 5555487
Alignment:
Q  16 atgaacctgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtctgttaatta 115  Q
    ||||||| |||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| |  ||||||      
T  5555651 atgaacccgtcaatagtgtgctaaataaaattccaagacctatttgtgtgtgacaattttcagattgcccaaatttttctttttgtaaatgcgttaatgg 5555552  T
Q  116 gctttt-ggttaggtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgcc 179  Q
    |||||| ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5555551 gcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgcc 5555487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 13 - 199
Target Start/End: Complemental strand, 33685731 - 33685544
Alignment:
Q  13 gagatgaacctgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtctgttaa 112  Q
    ||||| |||| ||||||||||||||||||||||||   |||| ||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||    
T  33685731 gagataaacccgtcaatagtgtgctaaataaaattatgagacatatttgcgtatgagaattttcagattgcccaaatttttctttttgtaagtgtgttaa 33685632  T
Q  113 ttagctttt-ggttaggtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccacccctg 199  Q
    |  |||||| |||| ||| ||||||||||||||||||||||||||||| ||||| ||| |||||||||||||||||||||| ||||||    
T  33685631 tgggcttttgggttgggtttaatgtgcaaaaattatcgatcgagcccgagcgactgcctggggtcgccgggcggtgaaaccgcccctg 33685544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 16 - 176
Target Start/End: Original strand, 3114099 - 3114260
Alignment:
Q  16 atgaacctgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtctgttaatta 115  Q
    ||||||| |||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| | |||||||      
T  3114099 atgaacccgtcaatagtgtgctaaataaaattccaagacctatttgtgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaatgg 3114198  T
Q  116 gctttt-ggttaggtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtc 176  Q
    |||||| ||||  |||||||||||||||||||||||||||||||||||||||| ||||||||    
T  3114199 gcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgtccggggtc 3114260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 13 - 199
Target Start/End: Complemental strand, 7002892 - 7002705
Alignment:
Q  13 gagatgaacctgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtctgttaa 112  Q
    |||||||||| ||||||||||||||||||||||||||  |||||||||||||||||||||||| |||||| |||||||||| |||||||| || ||||||    
T  7002892 gagatgaacccgtcaatagtgtgctaaataaaattccgtgacctatttgcgtgtgagaatttttagattgtccaaatttttatttttgtatgtgtgttaa 7002793  T
Q  113 ttagctttt-ggttaggtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccacccctg 199  Q
    || |||||| |||| ||| ||||||  ||||||  |||||||||||||||||||||| ||||||||||||||||||||||| ||||||    
T  7002792 ttggcttttgggttgggtgtaatgtagaaaaatcgtcgatcgagcccgggcgaccgctcggggtcgccgggcggtgaaaccgcccctg 7002705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 13 - 199
Target Start/End: Complemental strand, 7048763 - 7048576
Alignment:
Q  13 gagatgaacctgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtctgttaa 112  Q
    |||||||||| ||||||||||||||||||||||||||  |||||||||||||||||||||||| |||||| |||||||||| |||||||| || ||||||    
T  7048763 gagatgaacccgtcaatagtgtgctaaataaaattccgtgacctatttgcgtgtgagaatttttagattgtccaaatttttatttttgtatgtgtgttaa 7048664  T
Q  113 ttagctttt-ggttaggtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccacccctg 199  Q
    || |||||| |||| ||| ||||||  ||||||  |||||||||||||||||||||| ||||||||||||||||||||||| ||||||    
T  7048663 ttggcttttgggttgggtgtaatgtagaaaaatcgtcgatcgagcccgggcgaccgctcggggtcgccgggcggtgaaaccgcccctg 7048576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 13 - 179
Target Start/End: Complemental strand, 36630983 - 36630816
Alignment:
Q  13 gagatgaacctgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtctgttaa 112  Q
    |||||||||| |||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | ||||||    
T  36630983 gagatgaacccgtcaatagtgtgctaactaaaattccaagacctatttgcgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaa 36630884  T
Q  113 t-tagcttttggttaggtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgcc 179  Q
    |  |  ||||||||  || ||||||||||||||||||||||||||||||||||||| |||||||||||    
T  36630883 tggactttttggttgagtttaatgtgcaaaaattatcgatcgagcccgggcgaccgtccggggtcgcc 36630816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 13 - 179
Target Start/End: Complemental strand, 8394292 - 8394125
Alignment:
Q  13 gagatgaacctgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtctgttaa 112  Q
    ||||| |||| ||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| |||||||| | ||||||    
T  8394292 gagataaacccgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttccttttgtaaatgtgttaa 8394193  T
Q  113 t-tagcttttggttaggtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgcc 179  Q
    |  |  ||||||||  || |||||||||||||||||||||||||||||||||||||||||||||||||    
T  8394192 tggactttttggttgagtttaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgcc 8394125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 13 - 161
Target Start/End: Complemental strand, 36658348 - 36658199
Alignment:
Q  13 gagatgaacctgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtctgttaa 112  Q
    |||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||    
T  36658348 gagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttatttttgttagtatgttaa 36658249  T
Q  113 ttagctttt-ggttaggtctaatgtgcaaaaattatcgatcgagcccggg 161  Q
    || |||||| |||| |||| |||||||||||||||||||||||| |||||    
T  36658248 ttggcttttcggttgggtccaatgtgcaaaaattatcgatcgagtccggg 36658199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 13 - 160
Target Start/End: Original strand, 40920003 - 40920151
Alignment:
Q  13 gagatgaacctgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtctgttaa 112  Q
    |||||||||| |||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| |||||||||||||||||||| | ||||||    
T  40920003 gagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcatgtgagaattttcagattgtccaaatttttctttttgtaaatgtgttaa 40920102  T
Q  113 ttagctttt-ggttaggtctaatgtgcaaaaattatcgatcgagcccgg 160  Q
    || |||||| |||||  ||||||||||||||||||||||||||||||||    
T  40920103 ttggcttttgggttaaatctaatgtgcaaaaattatcgatcgagcccgg 40920151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 14 - 156
Target Start/End: Original strand, 38638237 - 38638380
Alignment:
Q  14 agatgaacctgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtctgttaat 113  Q
    ||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  38638237 agatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaat 38638336  T
Q  114 tagctttt-ggttaggtctaatgtgcaaaaattatcgatcgagc 156  Q
    |  ||||| |||| | |||||||||||||||||||| |||||||    
T  38638337 tgacttttgggttggatctaatgtgcaaaaattatcaatcgagc 38638380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 400 - 485
Target Start/End: Complemental strand, 2654304 - 2654219
Alignment:
Q  400 cacacttcatttcaaatcaaggatttaggtcaactcaaatattttcttggtattgaagtagctcattccaaagctggcatctccat 485  Q
    |||||||| |||||||||||||||||||| | |||||| |||||||||||| |  | ||||| || ||||||| ||||||||||||    
T  2654304 cacacttcttttcaaatcaaggatttaggcctactcaattattttcttggtctataggtagcacactccaaagttggcatctccat 2654219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 54 - 113
Target Start/End: Original strand, 10868514 - 10868575
Alignment:
Q  54 cctatttgcgtgtgagaattttcagatt--gcccaaatttttctttttgtaagtctgttaat 113  Q
    |||||||||| |||||||||||||||||  |||||||||||||||||||||| | |||||||    
T  10868514 cctatttgcgcgtgagaattttcagattttgcccaaatttttctttttgtaaatgtgttaat 10868575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 134 - 191
Target Start/End: Original strand, 10876829 - 10876886
Alignment:
Q  134 tgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaac 191  Q
    ||||||||||||||||||||||||||||||||| | |||| ||||||||  |||||||    
T  10876829 tgtgcaaaaattatcgatcgagcccgggcgaccacacgggttcgccgggaagtgaaac 10876886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 143 - 192
Target Start/End: Original strand, 37966614 - 37966663
Alignment:
Q  143 attatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaacc 192  Q
    |||||||||||||| ||| |||||||| | ||||||||||||||||||||    
T  37966614 attatcgatcgagctcggacgaccgcctgaggtcgccgggcggtgaaacc 37966663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 198 - 270
Target Start/End: Complemental strand, 2654505 - 2654433
Alignment:
Q  198 tggccttaaacaagccagtagaaaatgatatgaaagattaacttctttgcttgttcaacatgaatacacacaa 270  Q
    |||||| |||||||   ||||||||||  ||||||||||||||||||| ||| |||| |||| |||| |||||    
T  2654505 tggcctcaaacaagttggtagaaaatggcatgaaagattaacttctttacttattcatcatggatacgcacaa 2654433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 145; Significance: 6e-76; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 145; E-Value: 6e-76
Query Start/End: Original strand, 13 - 192
Target Start/End: Complemental strand, 45183148 - 45182968
Alignment:
Q  13 gagatgaacctgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtctgttaa 112  Q
    |||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  45183148 gagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgtgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaa 45183049  T
Q  113 ttagctttt-ggttaggtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaacc 192  Q
    || |||||| |||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45183048 ttggcttttgggttgggtctaatgcgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaacc 45182968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 133; E-Value: 8e-69
Query Start/End: Original strand, 13 - 200
Target Start/End: Original strand, 6930894 - 6931082
Alignment:
Q  13 gagatgaacctgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtctgttaa 112  Q
    |||||||||  |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| | ||||||    
T  6930894 gagatgaactcgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcctaaatttttctttttgtaaatgtgttaa 6930993  T
Q  113 ttagctttt-ggttaggtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccacccctgg 200  Q
    || |||||| |||| | ||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||    
T  6930994 ttggcttttgggttggatctaatgcgcaaaaattatcgatcgagcccgggcgaccgtccggggtcgccgggcggtgaaaccgcccctgg 6931082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 13 - 198
Target Start/End: Complemental strand, 33041120 - 33040934
Alignment:
Q  13 gagatgaacctgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtctgttaa 112  Q
    |||||||||| |||||||||||||||||||||||||| |||||||||||||||||| |||||||| ||||  ||||||||||||||||||||| ||||||    
T  33041120 gagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgaaaattttcaaattgttcaaatttttctttttgtaagtgtgttaa 33041021  T
Q  113 ttagctttt-ggttaggtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccacccct 198  Q
    ||||||||| |||| |||||||| ||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| |||||    
T  33041020 ttagcttttgggttgggtctaatatgcaaaaattatcaatcgagcccgagcgaccgcccggggtcgccgggcggtgaaaccgcccct 33040934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 13 - 192
Target Start/End: Original strand, 11018212 - 11018392
Alignment:
Q  13 gagatgaacctgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtctgttaa 112  Q
    |||||||||| |||||| ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  11018212 gagatgaacccgtcaattgtgtgctaaataaaattctgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaa 11018311  T
Q  113 ttagctttt-ggttaggtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaacc 192  Q
    || |||||| ||||  |||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||    
T  11018312 ttggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcctgggcgaccgcccggagtcgccggacggtgaaacc 11018392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 13 - 196
Target Start/End: Complemental strand, 27935345 - 27935161
Alignment:
Q  13 gagatgaacctgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtctgttaa 112  Q
    |||||||||| ||||||||| |||||||||||||||| |||||||||| ||| |||||||||||||||||||||||||||||||||||||||| ||||||    
T  27935345 gagatgaacccgtcaatagtatgctaaataaaattccgagacctattttcgtatgagaattttcagattgcccaaatttttctttttgtaagtgtgttaa 27935246  T
Q  113 ttagctttt-ggttaggtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccaccc 196  Q
    | ||||||| |||| ||| ||||||||||||||||||||||||||||||||||| |||| |||| ||| ||||||||||||||||    
T  27935245 tgagcttttgggttgggtttaatgtgcaaaaattatcgatcgagcccgggcgactgcccagggttgccaggcggtgaaaccaccc 27935161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 29 - 198
Target Start/End: Complemental strand, 45336025 - 45335856
Alignment:
Q  29 tagtgtgctaaataaaattccaagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtctgttaattagcttttggttagg 128  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| | ||||||| |  |||||||| ||    
T  45336025 tagtgtgctaaataaaattccaagacctatttgcgtgtaagaattttcagattgcccagatttttctttttgtaaatgtgttaatgactttttggttggg 45335926  T
Q  129 tctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccacccct 198  Q
    ||||||||| ||||||||||||| ||| ||||||||||||||| |||||||||||||||||||| |||||    
T  45335925 tctaatgtgtaaaaattatcgattgagtccgggcgaccgcccgaggtcgccgggcggtgaaaccgcccct 45335856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 13 - 178
Target Start/End: Original strand, 22968444 - 22968610
Alignment:
Q  13 gagatgaacctgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtctgttaa 112  Q
    |||||||| |||||||||||||||||||||||||| |||||||||||| ||||||| |||||| ||||||||||||||||||||||||||| | ||||||    
T  22968444 gagatgaaactgtcaatagtgtgctaaataaaatttcaagacctatttacgtgtgacaatttttagattgcccaaatttttctttttgtaaatgtgttaa 22968543  T
Q  113 ttagctttt-ggttaggtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgc 178  Q
    |  |||||| ||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  22968544 tgggcttttgggttaagtctaatgtgcaaaaattatcgatcgagcccggacgaccgcccggggtcgc 22968610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 29 - 200
Target Start/End: Original strand, 19565517 - 19565689
Alignment:
Q  29 tagtgtgctaaataaaattccaagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtctgttaat-tagcttttggttag 127  Q
    ||||||||||||||||||||| |||||||||||||||| ||||||||||||||| |||||||||||||||||||| | |||||||  |  |||||||| |    
T  19565517 tagtgtgctaaataaaattccgagacctatttgcgtgtaagaattttcagattgtccaaatttttctttttgtaaatgtgttaatggattttttggttgg 19565616  T
Q  128 gtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccacccctgg 200  Q
    |||||||||||||||||||||||| || |||||||||||||||||| |||||||||||||||||| |||||||    
T  19565617 gtctaatgtgcaaaaattatcgattgaacccgggcgaccgcccgggatcgccgggcggtgaaaccgcccctgg 19565689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 13 - 179
Target Start/End: Complemental strand, 19390313 - 19390146
Alignment:
Q  13 gagatgaacctgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtctgttaa 112  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| | ||||||    
T  19390313 gagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaa 19390214  T
Q  113 ttagctttt-ggttaggtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgcc 179  Q
    |   ||||| ||||  ||||||||||||||||||||||||||| ||||| ||||||||||||||||||    
T  19390213 tagacttttaggttgagtctaatgtgcaaaaattatcgatcgaacccggacgaccgcccggggtcgcc 19390146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 14 - 178
Target Start/End: Original strand, 6269427 - 6269592
Alignment:
Q  14 agatgaacctgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtctgttaat 113  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| | |||||||    
T  6269427 agatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaat 6269526  T
Q  114 tagctttt-ggttaggtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgc 178  Q
      |||||| ||||  |||||||||||||||||||||||||||| |||| |||||||||||| ||||    
T  6269527 gggcttttgggttgagtctaatgtgcaaaaattatcgatcgagtccggacgaccgcccgggatcgc 6269592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 13 - 192
Target Start/End: Original strand, 6503569 - 6503749
Alignment:
Q  13 gagatgaacctgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtctgttaa 112  Q
    ||||||||||  ||||| ||||||||||||||| ||| |||||||||||| ||||||||||||||||||||  |||||||||||||||||||| || |||    
T  6503569 gagatgaacccatcaattgtgtgctaaataaaaatccgagacctatttgcctgtgagaattttcagattgcttaaatttttctttttgtaagtgtgctaa 6503668  T
Q  113 ttagctttt-ggttaggtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaacc 192  Q
    || |||||| ||||  ||||||| ||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||    
T  6503669 ttggcttttgggttgagtctaatttgcaaaaataatcgatcgagcccgggcgaccgcccggggtcgccggacggtgaaacc 6503749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 13 - 179
Target Start/End: Original strand, 34084122 - 34084289
Alignment:
Q  13 gagatgaacctgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtctgttaa 112  Q
    ||||||||||  |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| | ||||||    
T  34084122 gagatgaacccatcaatagtgtgctaaataaaattccaagacctatttgcgtgtgataattttcatattgcccaaatttttctttttgtaaatgtgttaa 34084221  T
Q  113 t-tagcttttggttaggtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgcc 179  Q
    |  |  ||||||||   | ||||||||||||||||||||||||| |||||||||||||||||||||||    
T  34084222 tggactttttggttgaatttaatgtgcaaaaattatcgatcgagtccgggcgaccgcccggggtcgcc 34084289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 13 - 178
Target Start/End: Complemental strand, 39771957 - 39771791
Alignment:
Q  13 gagatgaacctgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtctgttaa 112  Q
    |||||||| ||||||||||||||  |||||||||| |||||||||||| ||||||| |||||||||||||||||||||||||||||| ||| | ||||||    
T  39771957 gagatgaaactgtcaatagtgtgtcaaataaaatttcaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttataaatgtgttaa 39771858  T
Q  113 ttagctttt-ggttaggtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgc 178  Q
    |  |||||| ||||  ||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  39771857 tgggcttttgggttgagtctaatgtgcaaaaattatcgaccgagcccgggcgaccgcccggggtcgc 39771791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 13 - 166
Target Start/End: Original strand, 40081741 - 40081893
Alignment:
Q  13 gagatgaacctgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtctgttaa 112  Q
    |||||||||| ||||||||||||||||| ||||| |||||| |||||||||||||| |||||||| ||||||||||||||||||||||||| | ||||||    
T  40081741 gagatgaacccgtcaatagtgtgctaaaaaaaat-ccaagatctatttgcgtgtgacaattttcaaattgcccaaatttttctttttgtaaatgtgttaa 40081839  T
Q  113 ttagcttttggttaggtctaatgtgcaaaaattatcgatcgagcccgggcgacc 166  Q
    | |||||||||||  ||||||||| |||||||||||||||||||||||||||||    
T  40081840 tgagcttttggttgagtctaatgttcaaaaattatcgatcgagcccgggcgacc 40081893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 13 - 191
Target Start/End: Complemental strand, 35514429 - 35514254
Alignment:
Q  13 gagatgaacctgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtctgttaa 112  Q
    |||||||||| ||||||||||||| |||||||||||| ||||||||||||| ||||||||||||| |||| ||||||||||||||||    || ||||||    
T  35514429 gagatgaacccgtcaatagtgtgcaaaataaaattcctagacctatttgcgagtgagaattttcatattgtccaaatttttcttttt----gtgtgttaa 35514334  T
Q  113 ttagctttt-ggttaggtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaac 191  Q
    |   ||||| |||| | |||| | ||| ||||||||||||||||||||| |||||| |||||||||||||||||||||||    
T  35514333 tggacttttgggttggatctagtatgcgaaaattatcgatcgagcccggacgaccgtccggggtcgccgggcggtgaaac 35514254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 54 - 157
Target Start/End: Complemental strand, 5135397 - 5135291
Alignment:
Q  54 cctatttgcgtgtgagaattttcagatt--gcccaaatttttctttttgtaagtctgttaattagctttt-ggttaggtctaatgtgcaaaaattatcga 150  Q
    |||||||| |||||||||||||| ||||  | |||||||||||||||||||||| ||||||| ||||||| |||| |||||||||| ||||||| |||||    
T  5135397 cctatttgtgtgtgagaattttcggattttgtccaaatttttctttttgtaagtgtgttaatgagcttttaggttgggtctaatgtacaaaaataatcga 5135298  T
Q  151 tcgagcc 157  Q
    |||||||    
T  5135297 tcgagcc 5135291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 142 - 200
Target Start/End: Complemental strand, 6891035 - 6890977
Alignment:
Q  142 aattatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccacccctgg 200  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||    
T  6891035 aattatcgatcgagcccgggcgaccgcccggtgtcgccgggcggtgaaaccgcccctgg 6890977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 130 - 191
Target Start/End: Complemental strand, 5354758 - 5354697
Alignment:
Q  130 ctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaac 191  Q
    ||||||||  |||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  5354758 ctaatgtgagaaaattaaggatcgagcccgggcgaccgcccggggtcgccgggcggtgaaac 5354697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 404 - 470
Target Start/End: Complemental strand, 19585369 - 19585303
Alignment:
Q  404 cttcatttcaaatcaaggatttaggtcaactcaaatattttcttggtattgaagtagctcattccaa 470  Q
    |||||||| ||||||| || |||||||| || ||||||||||||||||||||||| ||||| |||||    
T  19585369 cttcatttaaaatcaaagacttaggtcagcttaaatattttcttggtattgaagttgctcactccaa 19585303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 131 - 179
Target Start/End: Complemental strand, 22922205 - 22922157
Alignment:
Q  131 taatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgcc 179  Q
    |||||||||||||| |||||||||||||| ||||||||||||| |||||    
T  22922205 taatgtgcaaaaatgatcgatcgagcccgagcgaccgcccgggatcgcc 22922157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 61
Target Start/End: Complemental strand, 22922262 - 22922214
Alignment:
Q  13 gagatgaacctgtcaatagtgtgctaaataaaattccaagacctatttg 61  Q
    |||||||||| |||||||||||| ||||||||||||||||| |||||||    
T  22922262 gagatgaacccgtcaatagtgtgttaaataaaattccaagatctatttg 22922214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 404 - 470
Target Start/End: Original strand, 12298022 - 12298088
Alignment:
Q  404 cttcatttcaaatcaaggatttaggtcaactcaaatattttcttggtattgaagtagctcattccaa 470  Q
    |||||||| ||||||| || ||||| || || ||||||||||||||||||||||| ||||| |||||    
T  12298022 cttcatttaaaatcaaagacttaggccagcttaaatattttcttggtattgaagttgctcactccaa 12298088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 13 - 47
Target Start/End: Complemental strand, 5135455 - 5135421
Alignment:
Q  13 gagatgaacctgtcaatagtgtgctaaataaaatt 47  Q
    |||||||||| ||||||||||||||||||||||||    
T  5135455 gagatgaacccgtcaatagtgtgctaaataaaatt 5135421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 19 - 47
Target Start/End: Complemental strand, 51262143 - 51262115
Alignment:
Q  19 aacctgtcaatagtgtgctaaataaaatt 47  Q
    |||||||||||||||||||||||||||||    
T  51262143 aacctgtcaatagtgtgctaaataaaatt 51262115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 144; Significance: 2e-75; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 13 - 199
Target Start/End: Complemental strand, 28996897 - 28996710
Alignment:
Q  13 gagatgaacctgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtctgttaa 112  Q
    |||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  28996897 gagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaa 28996798  T
Q  113 ttagctttt-ggttaggtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccacccctg 199  Q
    ||  ||||| |||| ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||    
T  28996797 ttgacttttaggttgggtctaatgcgcaaaaattatcgatcgagctcgggcgaccgcccggggtcgccgggcggtgaaaccgcccctg 28996710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 13 - 179
Target Start/End: Complemental strand, 18339273 - 18339106
Alignment:
Q  13 gagatgaacctgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtctgttaa 112  Q
    |||||||||| |||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| |||||||||||||||| ||||||    
T  18339273 gagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcatgtgagaattttcagattgcccaaaattttctttttgtaagtgtgttaa 18339174  T
Q  113 ttagctttt-ggttaggtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgcc 179  Q
    || |||||| | || ||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  18339173 ttggcttttagattgggtctaatgtgcaaaaattattgatcgagcccgggcgaccgcccggggtcgcc 18339106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 13 - 178
Target Start/End: Complemental strand, 398784 - 398618
Alignment:
Q  13 gagatgaacctgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtctgttaa 112  Q
    |||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||| |||||||| ||||||||||||||||||||| ||| | ||||||    
T  398784 gagatgaaactgtcaatagtgtgccaaataaaattccaagacctatttacgtgtgacaattttcaaattgcccaaatttttctttttataaatgtgttaa 398685  T
Q  113 ttagc-ttttggttaggtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgc 178  Q
    | ||| ||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  398684 tgagctttttggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgc 398618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 29 - 200
Target Start/End: Complemental strand, 29743434 - 29743262
Alignment:
Q  29 tagtgtgctaaataaaattccaagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtctgttaattagc-ttttggttag 127  Q
    ||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| ||||| | ||||||| | | |||||||| |    
T  29743434 tagtgtgctaaataaaattccgagacctatttgcgtgtaagaattttcagattgcccaaatttttctttctgtaaatgtgttaatgaactttttggttgg 29743335  T
Q  128 gtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccacccctgg 200  Q
    |||||||||||||||||||||||| |||||||||| |||||||||| ||| ||| |||||||||| |||||||    
T  29743334 gtctaatgtgcaaaaattatcgattgagcccgggcaaccgcccgggatcgtcggacggtgaaaccgcccctgg 29743262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 16 - 179
Target Start/End: Complemental strand, 13837985 - 13837821
Alignment:
Q  16 atgaacctgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtctgttaatta 115  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | |||| ||      
T  13837985 atgaacccgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttgatgt 13837886  T
Q  116 gctttt-ggttaggtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgcc 179  Q
    |||||| ||||  ||||||||| ||||||||||||||||| |||| |||| ||||||||||||||    
T  13837885 gcttttgggttgagtctaatgtacaaaaattatcgatcgaacccgagcgatcgcccggggtcgcc 13837821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 16 - 179
Target Start/End: Original strand, 34948761 - 34948925
Alignment:
Q  16 atgaacctgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtctgttaatta 115  Q
    ||||||| |||||||||||||||||||||||| ||||| ||||||| |||||| |||||||||||||||||||||||||||||||||| | |||||||      
T  34948761 atgaacccgtcaatagtgtgctaaataaaatttcaagatctatttgtgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaatgg 34948860  T
Q  116 gctttt-ggttaggtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgcc 179  Q
    |||||| ||||  |||||||||||||||||||||||||||||| ||||||||||| |||||||||    
T  34948861 gcttttgggttgagtctaatgtgcaaaaattatcgatcgagcctgggcgaccgcctggggtcgcc 34948925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 13 - 163
Target Start/End: Original strand, 33229336 - 33229487
Alignment:
Q  13 gagatgaacctgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtctgttaa 112  Q
    |||||||| | | ||||||||||||||||||||| || |||| ||||| ||||| ||||||||||||||||||||||||||||||||| || | ||||||    
T  33229336 gagatgaatccggcaatagtgtgctaaataaaatcccgagacttatttacgtgtaagaattttcagattgcccaaatttttctttttggaaatgtgttaa 33229435  T
Q  113 ttagctttt-ggttaggtctaatgtgcaaaaattatcgatcgagcccgggcg 163  Q
    |   ||||| |||| |||||||||| ||||||| ||||||||||||||||||    
T  33229436 tggacttttgggttgggtctaatgtacaaaaatgatcgatcgagcccgggcg 33229487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 84 - 192
Target Start/End: Original strand, 31028435 - 31028544
Alignment:
Q  84 ccaaatttttctttttgtaagtctgttaattagctttt-ggttaggtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccggg 182  Q
    ||||| ||| |||||||||| | ||||||| ||||||| |||| | ||||||||||||||||||||||||||| |||||| ||||| |||||||||||||    
T  31028435 ccaaaatttcctttttgtaaatgtgttaatgagcttttaggttggatctaatgtgcaaaaattatcgatcgagtccgggcaaccgctcggggtcgccggg 31028534  T
Q  183 cggtgaaacc 192  Q
    ||||||||||    
T  31028535 cggtgaaacc 31028544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 95 - 192
Target Start/End: Original strand, 24697899 - 24697997
Alignment:
Q  95 tttttgtaagtctgttaattagcttttgg-ttaggtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaacc 192  Q
    ||||||||||| |||||||  |||||||| || || |||||||| ||||||||||||| ||||||||||||  | ||||||||||||||||||||||||    
T  24697899 tttttgtaagtgtgttaatgggcttttgggttgggcctaatgtgaaaaaattatcgattgagcccgggcgagtgtccggggtcgccgggcggtgaaacc 24697997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 143 - 199
Target Start/End: Complemental strand, 13647053 - 13646997
Alignment:
Q  143 attatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccacccctg 199  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||    
T  13647053 attatcgatcgagcccgggcgaccgcccggggtcgccgggtggtgaaaccgcccctg 13646997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 143 - 199
Target Start/End: Original strand, 34385519 - 34385575
Alignment:
Q  143 attatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccacccctg 199  Q
    ||||||||||||||| |||| ||||||||||||||||||||||||||||| ||||||    
T  34385519 attatcgatcgagccagggcaaccgcccggggtcgccgggcggtgaaaccgcccctg 34385575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 191
Target Start/End: Original strand, 21149331 - 21149380
Alignment:
Q  142 aattatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaac 191  Q
    ||||||||||| |||||| ||||||||||| |||| ||||||||||||||    
T  21149331 aattatcgatcaagcccgagcgaccgcccgaggtcaccgggcggtgaaac 21149380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 142 - 192
Target Start/End: Complemental strand, 2753387 - 2753337
Alignment:
Q  142 aattatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaacc 192  Q
    |||||||||| |||| ||||||||||||  |||||||||| ||||||||||    
T  2753387 aattatcgattgagctcgggcgaccgcctagggtcgccggacggtgaaacc 2753337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 19 - 47
Target Start/End: Complemental strand, 11971123 - 11971095
Alignment:
Q  19 aacctgtcaatagtgtgctaaataaaatt 47  Q
    |||||||||||||||||||||||||||||    
T  11971123 aacctgtcaatagtgtgctaaataaaatt 11971095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 144; Significance: 2e-75; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 13 - 199
Target Start/End: Complemental strand, 45418750 - 45418563
Alignment:
Q  13 gagatgaacctgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtctgttaa 112  Q
    |||||||||| |||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  45418750 gagatgaacccgtcaatagtgtgctaaataaaattcagagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaa 45418651  T
Q  113 ttagctttt-ggttaggtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccacccctg 199  Q
    || |||||| |||| | ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  45418650 ttggcttttgggttggatctaatgcgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccgcccctg 45418563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 13 - 198
Target Start/End: Original strand, 44084603 - 44084789
Alignment:
Q  13 gagatgaacctgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtctgttaa 112  Q
    |||||||||| |||||||||||||||||||||||||  |||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||    
T  44084603 gagatgaacccgtcaatagtgtgctaaataaaattctgagacctatttgcgtatgagaattttcagattgcccaaatttttctttttgtaagtgtgttaa 44084702  T
Q  113 ttagcttttgg-ttaggtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccacccct 198  Q
    | | ||||||| || ||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||    
T  44084703 tgaacttttggattgggtttaatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgccgggcggtgaaaccgcccct 44084789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 14 - 199
Target Start/End: Complemental strand, 8147518 - 8147331
Alignment:
Q  14 agatgaacctgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgagaatttt-cagattgcccaaatttttctttttgtaagtctgttaa 112  Q
    ||||||||| |||||||||||| ||||||||||||| ||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||    
T  8147518 agatgaacccgtcaatagtgtgttaaataaaattccgagatctatttgcgtgtgagaatttttcagattgcccaaatttttctttttgtaagtgtgttaa 8147419  T
Q  113 ttagcttttg-gttaggtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccacccctg 199  Q
    ||  |||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  8147418 ttgacttttgagttgggtctaatgtgcaaagattatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccgcccctg 8147331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 123; E-Value: 8e-63
Query Start/End: Original strand, 14 - 198
Target Start/End: Complemental strand, 771165 - 770975
Alignment:
Q  14 agatgaacctgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtctgttaat 113  Q
    ||||||||| ||||||| ||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  771165 agatgaacccgtcaataatgtgctaaataaagttccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaat 771066  T
Q  114 tagc-ttttggttaggtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccgg-----ggtcgccgggcggtgaaaccacccct 198  Q
      || |||||||| |||||||||||||||| |||||||||||||||||||||||||||||     |||||||||||||||||||| |||||    
T  771065 gggctttttggttgggtctaatgtgcaaaagttatcgatcgagcccgggcgaccgcccgggatccggtcgccgggcggtgaaaccgcccct 770975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 13 - 176
Target Start/End: Original strand, 41251634 - 41251798
Alignment:
Q  13 gagatgaacctgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtctgttaa 112  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| | ||||||    
T  41251634 gagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaa 41251733  T
Q  113 ttagctttt-ggttaggtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtc 176  Q
    |  |||||| ||||  |||||||||||||||||||||||||||||||||||||||||||||||||    
T  41251734 tgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtc 41251798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 24 - 179
Target Start/End: Complemental strand, 42440142 - 42439986
Alignment:
Q  24 gtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtctgttaattagctttt-g 122  Q
    |||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| | |||||||  |||||| |    
T  42440142 gtcaatagtgtgctaaataaaattgcaagacctatttgcgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaatgggcttttgg 42440043  T
Q  123 gttaggtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgcc 179  Q
    |||  ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42440042 gtttagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgcc 42439986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 13 - 178
Target Start/End: Original strand, 6403804 - 6403970
Alignment:
Q  13 gagatgaacctgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtctgttaa 112  Q
    |||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| ||| | ||||||    
T  6403804 gagatgaaactgtcaatagtgtgccaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttataaatgtgttaa 6403903  T
Q  113 ttagc-ttttggttaggtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgc 178  Q
    | | | ||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6403904 tgaactttttggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgc 6403970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 16 - 179
Target Start/End: Original strand, 32127144 - 32127308
Alignment:
Q  16 atgaacctgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtctgttaatta 115  Q
    ||||||| |||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| |||||||||||||||||| | ||||||| |    
T  32127144 atgaacccgtcaatagtgtgctaaataaaattccaagatctatttgcgtgtgacaattttcagattgcctaaatttttctttttgtaaatgtgttaatga 32127243  T
Q  116 gcttttggttag-gtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgcc 179  Q
    |||||||| | | || ||||||||||||||||| |||||||||||||||||||||||||||||||    
T  32127244 gcttttgggtcgagtttaatgtgcaaaaattattgatcgagcccgggcgaccgcccggggtcgcc 32127308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 16 - 179
Target Start/End: Complemental strand, 35962879 - 35962715
Alignment:
Q  16 atgaacctgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtctgttaatta 115  Q
    ||||||| |||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| |||||||||||||| | ||||||| |    
T  35962879 atgaacccgtcaatagtgtgctaaataaaattccaagacctatttgtgtgtgacaattttcagattgcccaaaattttctttttgtaaatgtgttaataa 35962780  T
Q  116 gctttt-ggttaggtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgcc 179  Q
    |||||| ||||  ||||||||||||||||||||||||||||||||| |||||||| |||||||||    
T  35962779 gcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccggacgaccgcctggggtcgcc 35962715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 13 - 161
Target Start/End: Original strand, 12756837 - 12756986
Alignment:
Q  13 gagatgaacctgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtctgttaa 112  Q
    |||||||||| |||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||    
T  12756837 gagatgaacccgtcaatagtgtgctaaataaaattccgagacttatttgcgtgtgagaattttcagattgctcaaatttttctttttgtaagtgtgttaa 12756936  T
Q  113 ttagctttt-ggttaggtctaatgtgcaaaaattatcgatcgagcccggg 161  Q
    || |||||| |||| ||||||||| |||||||||||||||||| ||||||    
T  12756937 ttggcttttgggttgggtctaatgcgcaaaaattatcgatcgaacccggg 12756986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 13 - 179
Target Start/End: Original strand, 17445041 - 17445206
Alignment:
Q  13 gagatgaacctgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtctgttaa 112  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| | ||||||    
T  17445041 gagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaa 17445140  T
Q  113 ttagctttt-ggttaggtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgcc 179  Q
    |  |||||| ||||  |||||  |||||||||||||||||||||| |||||||||||||| |||||||    
T  17445141 tgggcttttgggttgagtcta--gtgcaaaaattatcgatcgagctcgggcgaccgcccgaggtcgcc 17445206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 13 - 179
Target Start/End: Original strand, 31581622 - 31581789
Alignment:
Q  13 gagatgaacctgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtctgttaa 112  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | ||||||    
T  31581622 gagatgaacccgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaa 31581721  T
Q  113 ttagctttt-ggttaggtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgcc 179  Q
    |  |||||| || |  ||||||| |||||||| ||||| ||||||| ||||||||||||| |||||||    
T  31581722 tgggcttttgggatgagtctaatatgcaaaaagtatcgctcgagcctgggcgaccgcccgtggtcgcc 31581789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 16 - 192
Target Start/End: Original strand, 8059336 - 8059513
Alignment:
Q  16 atgaacctgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtctgttaatta 115  Q
    ||||||| |||||| ||||||||||||||||||| ||||| ||||| ||||||||||||||| |||| |||||||||||||||||||||| ||||||||     
T  8059336 atgaacccgtcaattgtgtgctaaataaaattccgagaccgatttgtgtgtgagaattttcaaattggccaaatttttctttttgtaagtgtgttaattg 8059435  T
Q  116 gctttt-ggttaggtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaacc 192  Q
    |||||| ||||   ||||||||||||||||||||||| ||||| |||||| || ||||||||| ||||||||||||||    
T  8059436 gcttttgggttgactctaatgtgcaaaaattatcgattgagcctgggcgatcggccggggtcgtcgggcggtgaaacc 8059513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 16 - 176
Target Start/End: Complemental strand, 16405764 - 16405603
Alignment:
Q  16 atgaacctgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtctgttaatta 115  Q
    ||||||| ||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| |||||||||||||||| ||| | ||||||| |    
T  16405764 atgaacccgtcaatagtgtgctaaataaaattccaagacttatttgcgtgtgacaattttcagattgtccaaatttttctttttataaatgtgttaatga 16405665  T
Q  116 gctttt-ggttaggtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtc 176  Q
    |||||| ||||  |||||| ||||||||||||||||| |||||||||||||||||| |||||    
T  16405664 gcttttgggttgagtctaacgtgcaaaaattatcgattgagcccgggcgaccgcccagggtc 16405603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 16 - 173
Target Start/End: Complemental strand, 18981780 - 18981622
Alignment:
Q  16 atgaacctgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtctgttaatta 115  Q
    ||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |||||| | ||||||||||||||||||||||||| | | |||||      
T  18981780 atgaacccgtcaacagtgtgctaaataaaattccaagacctatttgcgtgtgacaatttttaaattgcccaaatttttctttttgtaaatgttttaatgg 18981681  T
Q  116 gctttt-ggttaggtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggg 173  Q
     ||||| ||||  ||||||||||||||||||||| ||||||||||| ||||||||||||    
T  18981680 acttttgggttgagtctaatgtgcaaaaattatcaatcgagcccggacgaccgcccggg 18981622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 43 - 179
Target Start/End: Original strand, 2958131 - 2958267
Alignment:
Q  43 aaattccaagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtctgttaattagctttt-ggttaggtctaatgtgcaaa 141  Q
    |||||||||||||||||||||||||| |||||||||||| ||||||||||||| ||||||| | |||||||  |||||| ||||  ||||||||||| ||    
T  2958131 aaattccaagacctatttgcgtgtgacaattttcagattacccaaatttttctctttgtaaatgtgttaatgggcttttgggttgagtctaatgtgc-aa 2958229  T
Q  142 aattatcgatcgagcccgggcgaccgcccggggtcgcc 179  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  2958230 aattatcgatcgagcccggacgaccgcccggggtcgcc 2958267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 24 - 154
Target Start/End: Complemental strand, 2286018 - 2285887
Alignment:
Q  24 gtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtctgttaat-tagcttttg 122  Q
    |||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| |||||||||| ||| |||| | |||||||  |  |||||    
T  2286018 gtcaatagtgtgctaaataaaattccaaaacctatttgcgtgtgacaattttcagattgctcaaatttttcctttcgtaaatgtgttaatagactttttg 2285919  T
Q  123 gttaggtctaatgtgcaaaaattatcgatcga 154  Q
    ||| | | ||||||||||||||||||||||||    
T  2285918 gttggatttaatgtgcaaaaattatcgatcga 2285887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 66 - 199
Target Start/End: Complemental strand, 26238071 - 26237937
Alignment:
Q  66 tgagaattttcagatt-gcccaaatttttctttttgtaagtctgttaattagcttttggttagg-tctaatgtgcaaaaattatcgatcgagcccgggcg 163  Q
    ||||| |||||||||| |||||||||||||||||||||||| |||||||   ||||||||| |  |||||| ||||||||| ||||||||||||||||||    
T  26238071 tgagagttttcagatttgcccaaatttttctttttgtaagtgtgttaatggacttttggtttgcatctaatttgcaaaaat-atcgatcgagcccgggcg 26237973  T
Q  164 accgcccggggtcgccgggcggtgaaaccacccctg 199  Q
    |||||||||||||||||||| || ||||||||||||    
T  26237972 accgcccggggtcgccgggctgtaaaaccacccctg 26237937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 54 - 199
Target Start/End: Original strand, 4555250 - 4555397
Alignment:
Q  54 cctatttgcgtgtgagaattttcagatt--gcccaaatttttctttttgtaagtctgttaattagctttt-ggttaggtctaatgtgcaaaaattatcga 150  Q
    ||||||| ||||||||||||||||||||  ||||||| |||||||||||||||| ||||||  ||||||| |||| ||| | ||||||||||||||||||    
T  4555250 cctatttacgtgtgagaattttcagattttgcccaaaattttctttttgtaagtgtgttaacgagcttttgggttgggtttgatgtgcaaaaattatcga 4555349  T
Q  151 tcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccacccctg 199  Q
    ||||| ||  ||||||||||| | ||||||||||||| |||||||||||    
T  4555350 tcgagtcc-agcgaccgcccgagatcgccgggcggtggaaccacccctg 4555397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 13 - 113
Target Start/End: Original strand, 26162702 - 26162799
Alignment:
Q  13 gagatgaacctgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtctgttaa 112  Q
    |||||||||| ||||||| ||||||||||||   ||| ||||||||||| || |||||||||| ||||||||||||||||||||||||||||| ||||||    
T  26162702 gagatgaacccgtcaataatgtgctaaataa---tccgagacctatttgtgtttgagaatttttagattgcccaaatttttctttttgtaagtgtgttaa 26162798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 149 - 200
Target Start/End: Complemental strand, 34523270 - 34523219
Alignment:
Q  149 gatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccacccctgg 200  Q
    |||||||||||||||||||||||||||||||||||||| ||||| |||||||    
T  34523270 gatcgagcccgggcgaccgcccggggtcgccgggcggtaaaaccgcccctgg 34523219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 54 - 170
Target Start/End: Original strand, 7072589 - 7072710
Alignment:
Q  54 cctatttgcgtgtgagaattttcaga--ttgcccaaatttttctttttgtaagtctgt--taattagcttttggttag-gtctaatgtgcaaaaattatc 148  Q
    ||||||| |||| |||||||||||||  ||| ||||  |||||||||| ||||| |||  ||||  |||||||| | | || ||||||  ||||||||||    
T  7072589 cctatttacgtgcgagaattttcagaatttgtccaatattttctttttataagtgtgtgttaatgggcttttgggttgagtttaatgtaaaaaaattatc 7072688  T
Q  149 gatcgagcccgggcgaccgccc 170  Q
    ||||||||||||||||||||||    
T  7072689 gatcgagcccgggcgaccgccc 7072710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 413 - 479
Target Start/End: Complemental strand, 27034906 - 27034840
Alignment:
Q  413 aaatcaaggatttaggtcaactcaaatattttcttggtattgaagtagctcattccaaagctggcat 479  Q
    ||||||||||| | |||||||||||||| || ||||| ||||| || |||||||||||||| |||||    
T  27034906 aaatcaaggatcttggtcaactcaaatacttccttggcattgaggttgctcattccaaagcaggcat 27034840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 159
Target Start/End: Complemental strand, 34906028 - 34905969
Alignment:
Q  101 taagtctgttaattagcttttgg-ttaggtctaatgtgcaaaaattatcgatcgagcccg 159  Q
    ||||| |||||||  |||||||| |||||  |||||||||||||||||||||||||||||    
T  34906028 taagtgtgttaatgggcttttgggttaggcttaatgtgcaaaaattatcgatcgagcccg 34905969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 19 - 47
Target Start/End: Complemental strand, 31392960 - 31392932
Alignment:
Q  19 aacctgtcaatagtgtgctaaataaaatt 47  Q
    |||||||||||||||||||||||||||||    
T  31392960 aacctgtcaatagtgtgctaaataaaatt 31392932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 143; Significance: 9e-75; HSPs: 45)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 143; E-Value: 9e-75
Query Start/End: Original strand, 13 - 202
Target Start/End: Original strand, 3292896 - 3293086
Alignment:
Q  13 gagatgaacctgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtctgttaa 112  Q
    |||||||||  |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  3292896 gagatgaactcgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaa 3292995  T
Q  113 ttagctttt-ggttaggtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccacccctggcc 202  Q
    || |||||| |||| ||||||||| |||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |||||||||    
T  3292996 ttggcttttgggttgggtctaatgggcaaaaattatcgatcgagcccgggcgaccgcccggggtcactgggcggtgaaaccgcccctggcc 3293086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 143; E-Value: 9e-75
Query Start/End: Original strand, 13 - 198
Target Start/End: Original strand, 30216742 - 30216928
Alignment:
Q  13 gagatgaacctgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtctgttaa 112  Q
    |||||||||| |||||||||||||||||||||||||| ||| |||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||    
T  30216742 gagatgaacccgtcaatagtgtgctaaataaaattccgagatctatttgcatgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaa 30216841  T
Q  113 ttagctttt-ggttaggtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccacccct 198  Q
    ||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || |||||    
T  30216842 ttagcttttgggttgggtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccggacggtgaatccgcccct 30216928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 140; E-Value: 6e-73
Query Start/End: Original strand, 13 - 199
Target Start/End: Original strand, 6690235 - 6690422
Alignment:
Q  13 gagatgaacctgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtctgttaa 112  Q
    |||| ||||| |||||||||||||||||||||||| | |||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||    
T  6690235 gagacgaacccgtcaatagtgtgctaaataaaatttcgagacctatttgcgtgtgagaattttcagtttgcccaaatttttctttttgtaagtgtgttaa 6690334  T
Q  113 ttagctttt-ggttaggtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccacccctg 199  Q
    || |||||| |||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  6690335 ttggcttttgggttgggtctaatgcgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccgcccctg 6690422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 15 - 199
Target Start/End: Original strand, 50205079 - 50205264
Alignment:
Q  15 gatgaacctgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtctgttaatt 114  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| ||||||||    
T  50205079 gatgaacccgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgagaattttcagattgtccaattttttctttttgtaagtgtgttaatt 50205178  T
Q  115 agctttt-ggttaggtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccacccctg 199  Q
     |||||| |||| | |||||||||||||||||||||||||||| |||||||||||||||| ||||||| |||||||||| ||||||    
T  50205179 ggcttttgggttggatctaatgtgcaaaaattatcgatcgagctcgggcgaccgcccgggatcgccggacggtgaaaccgcccctg 50205264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 133; E-Value: 8e-69
Query Start/End: Original strand, 13 - 192
Target Start/End: Original strand, 43143584 - 43143764
Alignment:
Q  13 gagatgaacctgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtctgttaa 112  Q
    ||||||||||  ||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  43143584 gagatgaacccatcaattgtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaa 43143683  T
Q  113 ttagctttt-ggttaggtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaacc 192  Q
    || |||||| ||||  |||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||    
T  43143684 ttggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgtcggacggtgaaacc 43143764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 13 - 192
Target Start/End: Original strand, 42333776 - 42333956
Alignment:
Q  13 gagatgaacctgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtctgttaa 112  Q
    ||||||||| | ||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  42333776 gagatgaacttatcaattgtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaa 42333875  T
Q  113 ttagctttt-ggttaggtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaacc 192  Q
    || |||||| ||||  |||||||||||||||||||||||| |||||||| |||||||||||| |||| || ||||||||||    
T  42333876 ttggcttttgggttgagtctaatgtgcaaaaattatcgattgagcccggacgaccgcccgggatcgctggacggtgaaacc 42333956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 13 - 191
Target Start/End: Complemental strand, 48989495 - 48989316
Alignment:
Q  13 gagatgaacctgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtctgttaa 112  Q
    |||||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||    
T  48989495 gagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcgtatgagaattttcagattgcccaaatttttctttttgtaagtgtgttaa 48989396  T
Q  113 ttagcttttg-gttaggtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaac 191  Q
    |   |||||| ||| ||| |||||||||||||||||||||||| |||||  |||||||||| |||| |||||||||||||    
T  48989395 tggacttttgagttgggtttaatgtgcaaaaattatcgatcgaacccggttgaccgcccggagtcgtcgggcggtgaaac 48989316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 13 - 178
Target Start/End: Complemental strand, 20129477 - 20129311
Alignment:
Q  13 gagatgaacctgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtctgttaa 112  Q
    |||||||| ||||||||||||||| ||||||||||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||||| | ||||||    
T  20129477 gagatgaaactgtcaatagtgtgccaaataaaattctaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaa 20129378  T
Q  113 ttagctttt-ggttaggtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgc 178  Q
    |  |||||| ||||  |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20129377 tgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgc 20129311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 13 - 179
Target Start/End: Complemental strand, 25930875 - 25930708
Alignment:
Q  13 gagatgaacctgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtctgttaa 112  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| | ||||||    
T  25930875 gagatgaacccgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgacaattttcaaattgcccaaatttttctttttgtaaatgtgttaa 25930776  T
Q  113 ttagctttt-ggttaggtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgcc 179  Q
    |  |||||| ||||  || ||||||||||||||||| |||||||||||||||||||||| ||||||||    
T  25930775 tgggcttttgggttgagtttaatgtgcaaaaattatagatcgagcccgggcgaccgcccagggtcgcc 25930708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 13 - 178
Target Start/End: Complemental strand, 13012355 - 13012189
Alignment:
Q  13 gagatgaacctgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtctgttaa 112  Q
    |||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||| |||||||| ||||||||||||||||||||| ||| | ||||||    
T  13012355 gagatgaaactgtcaatagtgtgccaaataaaattccaagacctatttacgtgtgacaattttcaaattgcccaaatttttctttttataaatgtgttaa 13012256  T
Q  113 ttagc-ttttggttaggtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgc 178  Q
    | ||| ||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13012255 tgagctttttggttgaatctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgc 13012189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 13 - 178
Target Start/End: Complemental strand, 47500940 - 47500774
Alignment:
Q  13 gagatgaacctgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtctgttaa 112  Q
    |||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||| |||||||| ||||||||||||||||||||  ||| | ||||||    
T  47500940 gagatgaaactgtcaatagtgtgccaaataaaattccaagacctatttacgtgtgacaattttcaaattgcccaaatttttcttttcataaatgtgttaa 47500841  T
Q  113 ttagc-ttttggttaggtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgc 178  Q
    | ||| ||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47500840 tgagctttttggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgc 47500774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 31 - 199
Target Start/End: Original strand, 10352902 - 10353071
Alignment:
Q  31 gtgtgctaaataaaattccaagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtctgttaat-tagcttttggttaggt 129  Q
    ||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| |||||||| | |||||||  |  |||||||| |||    
T  10352902 gtgtgctaaataaaattccgagacctatttgcgtgtaagaattttcagattgcccaaatttttccttttgtaaatgtgttaatggactttttggttgggt 10353001  T
Q  130 ctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccacccctg 199  Q
    |||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||| ||||||    
T  10353002 ctaatgtgcaaaaattatcgattgagcccgggcgaccgccaggggtcgccggacggtgaaaccgcccctg 10353071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 13 - 199
Target Start/End: Original strand, 28877250 - 28877437
Alignment:
Q  13 gagatgaacctgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtctgttaa 112  Q
    ||||||||||  ||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||  ||||||    
T  28877250 gagatgaacccatcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaatttttagatttcccaaatttttctttttataagcgtgttaa 28877349  T
Q  113 ttagctttt-ggttaggtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccacccctg 199  Q
    ||||||||| ||||   |||||||||||||||||||||||| |||||  |||||||| |||||||  ||| |||||||||| ||||||    
T  28877350 ttagcttttaggttgaatctaatgtgcaaaaattatcgatctagcccaagcgaccgcacggggtcatcggacggtgaaaccgcccctg 28877437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 13 - 179
Target Start/End: Original strand, 36382346 - 36382512
Alignment:
Q  13 gagatgaacctgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtctgttaa 112  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| |||||||| | ||||||    
T  36382346 gagatgaacccgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgacaattttcagattgtccaaatttttc-ttttgtaaatgtgttaa 36382444  T
Q  113 t-tagcttttggttaggtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgcc 179  Q
    |  |  ||||||||  || ||||||||||||||||| |||||||||||||||||||||||||||||||    
T  36382445 tggactttttggttgagtttaatgtgcaaaaattatggatcgagcccgggcgaccgcccggggtcgcc 36382512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 13 - 178
Target Start/End: Original strand, 26439279 - 26439445
Alignment:
Q  13 gagatgaacctgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtctgttaa 112  Q
    |||||||| ||||||||||||||  |||||||||| |||||||||||| ||||||| |||||||||||||||||||||||||||||| ||| | ||||||    
T  26439279 gagatgaaactgtcaatagtgtgtcaaataaaatttcaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttataaatgtgttaa 26439378  T
Q  113 ttagctttt-ggttaggtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgc 178  Q
    |  |||||| ||||  ||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  26439379 tgggcttttgggttgagtctaatgtgcaaaaattatcgaccgagcccgggcgaccgcccggggtcgc 26439445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 13 - 178
Target Start/End: Original strand, 34407284 - 34407450
Alignment:
Q  13 gagatgaacctgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtctgttaa 112  Q
    |||||||| ||||||||||||||  |||||||||| |||||||||||| ||||||| |||||||||||||||||||||||||||||| ||| | ||||||    
T  34407284 gagatgaaactgtcaatagtgtgtcaaataaaatttcaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttataaatgtgttaa 34407383  T
Q  113 ttagctttt-ggttaggtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgc 178  Q
    |  |||||| ||||  ||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  34407384 tgggcttttgggttgagtctaatgtgcaaaaattatcgaccgagcccgggcgaccgcccggggtcgc 34407450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 13 - 162
Target Start/End: Complemental strand, 44156818 - 44156668
Alignment:
Q  13 gagatgaacctgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtctgttaa 112  Q
    |||||||||| |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| ||||| |||||||||||||||| ||||||    
T  44156818 gagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgagagaattttcagattgtccaaaattttctttttgtaagtgtgttaa 44156719  T
Q  113 ttagctttt-ggttaggtctaatgtgcaaaaattatcgatcgagcccgggc 162  Q
    || |||||| |||| ||||||||||||||||||||||| | ||||||||||    
T  44156718 ttggcttttgggttgggtctaatgtgcaaaaattatcggttgagcccgggc 44156668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 29 - 199
Target Start/End: Original strand, 30077647 - 30077817
Alignment:
Q  29 tagtgtgctaaataaaattccaagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtctgttaattagc-ttttggttag 127  Q
    ||||||||||||||||||| ||||||||||||| |||| | ||||||||||||| |||||||||||||||||||| | ||||||| | | |||||||| |    
T  30077647 tagtgtgctaaataaaatttcaagacctatttgtgtgtaaaaattttcagattgtccaaatttttctttttgtaaatgtgttaatgaactttttggttgg 30077746  T
Q  128 gtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccacccctg 199  Q
    ||||||||||||||| |||||||| ||||| ||||||||||||| ||||| |||||||||||||| ||||||    
T  30077747 gtctaatgtgcaaaatttatcgattgagcctgggcgaccgcccgaggtcg-cgggcggtgaaaccgcccctg 30077817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 13 - 178
Target Start/End: Complemental strand, 43356071 - 43355905
Alignment:
Q  13 gagatgaacctgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtctgttaa 112  Q
    |||||||| ||||||||||||||  |||||||||| |||||||||||| ||||||| |||||||||||||||||||||||||||||| ||| | ||||||    
T  43356071 gagatgaaactgtcaatagtgtgtcaaataaaatttcaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttataaatgtgttaa 43355972  T
Q  113 ttagctttt-ggttaggtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgc 178  Q
    |  |||||| ||||  ||||||||||||||||||||||| |||||||||||||| ||| ||||||||    
T  43355971 tgggcttttgggttgagtctaatgtgcaaaaattatcgaccgagcccgggcgactgcctggggtcgc 43355905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 16 - 176
Target Start/End: Original strand, 29319708 - 29319869
Alignment:
Q  16 atgaacctgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtctgttaatta 115  Q
    ||||||| ||||||||||||||||||||||||||||||| |||||| |||||| |||||||||||||| ||||||||||||||||||| | |||||||      
T  29319708 atgaacccgtcaatagtgtgctaaataaaattccaagacttatttgtgtgtgacaattttcagattgctcaaatttttctttttgtaaatgtgttaatgg 29319807  T
Q  116 gctttt-ggttaggtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtc 176  Q
    | |||| ||||  |||||||||||||||||||||||||||||| || |||||||| ||||||    
T  29319808 gattttgggttgagtctaatgtgcaaaaattatcgatcgagcctggacgaccgccaggggtc 29319869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 26 - 197
Target Start/End: Complemental strand, 26448206 - 26448035
Alignment:
Q  26 caatagtgtgctaaataaaattccaagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtctgttaattagctttt-ggt 124  Q
    |||||||||||||||||||||||| | ||||||||| || |||||||||||||||||||||||||||| ||||||||||| |||||||   ||||| |||    
T  26448206 caatagtgtgctaaataaaattccgaaacctatttgtgtatgagaattttcagattgcccaaattttt-tttttgtaagtgtgttaatggacttttgggt 26448108  T
Q  125 taggtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccacccc 197  Q
    ||| | ||||||||||||||||||||||||| |||| ||| ||| ||| ||||||||||||||||||| ||||    
T  26448107 tagatttaatgtgcaaaaattatcgatcgagtccggacgatcgcacggagtcgccgggcggtgaaaccgcccc 26448035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 13 - 192
Target Start/End: Original strand, 29995983 - 29996163
Alignment:
Q  13 gagatgaacctgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtctgttaa 112  Q
    |||||||| | |||||||||||||| ||||||||||| ||| |||||||||||  ||||||||||||||||||||||||||||||| |||| | ||||||    
T  29995983 gagatgaatccgtcaatagtgtgcttaataaaattccgagaactatttgcgtgcaagaattttcagattgcccaaatttttcttttcgtaaatgtgttaa 29996082  T
Q  113 t-tagcttttggttaggtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaacc 192  Q
    |  |  ||||||||  ||||||||| |||||||||||||||||| |||| |||||| ||||| ||| ||||||||||||||    
T  29996083 tggactttttggttgagtctaatgtacaaaaattatcgatcgagtccggacgaccgtccgggatcgtcgggcggtgaaacc 29996163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 13 - 155
Target Start/End: Complemental strand, 35546120 - 35545977
Alignment:
Q  13 gagatgaacctgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtctgttaa 112  Q
    ||||||||||  ||||||||||||||||||||||||  ||||| |||||||||||||||||||||||||||||||| |||||||||||||||| ||||||    
T  35546120 gagatgaacccatcaatagtgtgctaaataaaattcagagacccatttgcgtgtgagaattttcagattgcccaaaattttctttttgtaagtgtgttaa 35546021  T
Q  113 ttagctttt-ggttaggtctaatgtgcaaaaattatcgatcgag 155  Q
    || |||||| |||| ||||| ||| ||||||||| |||||||||    
T  35546020 ttggcttttgggttgggtctgatgcgcaaaaattgtcgatcgag 35545977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 16 - 166
Target Start/End: Complemental strand, 40529179 - 40529028
Alignment:
Q  16 atgaacctgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtctgttaatta 115  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||| |||||||||||||||||||| | ||||||| |    
T  40529179 atgaacccgtcaatagtgtgctaaataaaattccaagacctatttgcatgtgacaattttcaaattgtccaaatttttctttttgtaaatgtgttaatga 40529080  T
Q  116 gctttt-ggttaggtctaatgtgcaaaaattatcgatcgagcccgggcgacc 166  Q
    | |||| ||||  || ||||||||||||||||||||||||| |||| |||||    
T  40529079 gtttttaggttgagtttaatgtgcaaaaattatcgatcgagtccggacgacc 40529028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 13 - 169
Target Start/End: Original strand, 17511233 - 17511391
Alignment:
Q  13 gagatgaacctgtcaatagtgtgctaaataaaatt-ccaagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtctgtta 111  Q
    ||||||||||  |||||| |||||||||||||||| ||||||||||||||||||| | |||||||| ||||||||||||||||||||||||| | |||||    
T  17511233 gagatgaaccgatcaataatgtgctaaataaaatttccaagacctatttgcgtgtaacaattttcaaattgcccaaatttttctttttgtaaatgtgtta 17511332  T
Q  112 attagctttt-ggttaggtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcc 169  Q
    ||  |||||| ||||  |||||||||||||||||||||||||||| | |||||||||||    
T  17511333 atgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagtctgggcgaccgcc 17511391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 13 - 113
Target Start/End: Complemental strand, 6235687 - 6235587
Alignment:
Q  13 gagatgaacctgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtctgttaa 112  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| | ||||||    
T  6235687 gagatgaacccgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgacaattttcaaattgcccaaatttttctttttgtaaatgtgttaa 6235588  T
Q  113 t 113  Q
    |    
T  6235587 t 6235587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 54 - 190
Target Start/End: Complemental strand, 30110084 - 30109945
Alignment:
Q  54 cctatttgcgtgtgagaattttcagatt--gcccaaatttttctttttgtaagtctgttaattagcttttggttagg-tctaatgtgcaaaaattatcga 150  Q
    ||||||||||||||||| |||||| |||  | |||||||||||||||||||||| |||||||   |||| |||| || ||||||||||||||||||||||    
T  30110084 cctatttgcgtgtgagatttttcatattttgtccaaatttttctttttgtaagtgtgttaatggtctttgggtttgggtctaatgtgcaaaaattatcga 30109985  T
Q  151 tcgagcccgggcgaccgcccggggtcgccgggcggtgaaa 190  Q
    ||||| ||||||||||| ||||||||| ||||||||||||    
T  30109984 tcgagtccgggcgaccgtccggggtcgtcgggcggtgaaa 30109945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 25 - 199
Target Start/End: Original strand, 13392893 - 13393057
Alignment:
Q  25 tcaatagtgtgctaaataaaattccaagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtctgttaattagcttttggt 124  Q
    ||||||||||||||||||||||| | ||||||||||||||||||||||||| |||||||||||||||||||||||||          ||    ||| |||    
T  13392893 tcaatagtgtgctaaataaaatttcgagacctatttgcgtgtgagaatttttagattgcccaaatttttctttttgt----------atacaatttaggt 13392982  T
Q  125 taggtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccacccctg 199  Q
    | | | |||| ||||||| | |||||| ||||||||||||||| |||||||||| ||||||||||||| ||||||    
T  13392983 tggatgtaatatgcaaaagtcatcgattgagcccgggcgaccgtccggggtcgctgggcggtgaaaccgcccctg 13393057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 25 - 199
Target Start/End: Original strand, 13396032 - 13396196
Alignment:
Q  25 tcaatagtgtgctaaataaaattccaagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtctgttaattagcttttggt 124  Q
    ||||||||||||||||||||||| | ||||||||||||||||||||||||| |||||||||||||||||||||||||          ||    ||| |||    
T  13396032 tcaatagtgtgctaaataaaatttcgagacctatttgcgtgtgagaatttttagattgcccaaatttttctttttgt----------atacaatttaggt 13396121  T
Q  125 taggtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccacccctg 199  Q
    | | | |||| ||||||| | |||||| ||||||||||||||| |||||||||| ||||||||||||| ||||||    
T  13396122 tggatgtaatatgcaaaagtcatcgattgagcccgggcgaccgtccggggtcgctgggcggtgaaaccgcccctg 13396196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 54 - 167
Target Start/End: Complemental strand, 48130087 - 48129978
Alignment:
Q  54 cctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtctgttaattagcttttgg-ttaggtctaatgtgcaaaaattatcgatc 152  Q
    ||||||||||||||||| ||||||     ||||||||||||||||||||||| ||||||| ||||||||| || |||||||| |||||||||||||||||    
T  48130087 cctatttgcgtgtgagagttttca-----cccaaatttttctttttgtaagtgtgttaatgagcttttgggttgggtctaatatgcaaaaattatcgatc 48129993  T
Q  153 gagcccgggcgaccg 167  Q
    |||||||| ||||||    
T  48129992 gagcccggtcgaccg 48129978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 13 - 144
Target Start/End: Complemental strand, 1817884 - 1817752
Alignment:
Q  13 gagatgaacctgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtctgttaa 112  Q
    |||||||| | | |||||||||| ||||||||||||| |||||||||||||||| |||||||| ||||||||||||||||||||||| ||| | | ||||    
T  1817884 gagatgaatccgacaatagtgtgttaaataaaattccgagacctatttgcgtgtaagaatttttagattgcccaaatttttctttttataaatgtattaa 1817785  T
Q  113 ttagcttttgg-ttaggtctaatgtgcaaaaat 144  Q
    |   ||||||| || | ||||||||||||||||    
T  1817784 tggacttttggattggatctaatgtgcaaaaat 1817752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 142 - 200
Target Start/End: Original strand, 49908782 - 49908840
Alignment:
Q  142 aattatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccacccctgg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  49908782 aattatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccgcccctgg 49908840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 142 - 199
Target Start/End: Original strand, 5517494 - 5517551
Alignment:
Q  142 aattatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccacccctg 199  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||    
T  5517494 aattatcgatcgagcccaggcgaccgcccggggtcgccgggcggtgaaaccgcccctg 5517551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 138 - 192
Target Start/End: Complemental strand, 7769369 - 7769315
Alignment:
Q  138 caaaaattatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaacc 192  Q
    |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||    
T  7769369 caaaaattatcgatcgagcccgggcgaccgcctggggtcgccggacggtgaaacc 7769315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 143 - 199
Target Start/End: Original strand, 6212029 - 6212085
Alignment:
Q  143 attatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccacccctg 199  Q
    |||||||||||||| |||||||||||||| ||||||||| |||||||||| ||||||    
T  6212029 attatcgatcgagctcgggcgaccgcccgaggtcgccggacggtgaaaccgcccctg 6212085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 80 - 191
Target Start/End: Complemental strand, 45194276 - 45194164
Alignment:
Q  80 ttgcccaaatttttctttttgtaagtctgttaattagcttttggttag-gtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgc 178  Q
    ||||||||  |||| ||||||||||| |||||||   ||||||| | | || ||||||||||||||||| ||||||| |||||| | |||| |||||||     
T  45194276 ttgcccaatattttttttttgtaagtgtgttaatggacttttgggttgagtttaatgtgcaaaaattattgatcgagtccgggcaatcgcctggggtcgt 45194177  T
Q  179 cgggcggtgaaac 191  Q
    |||||||||||||    
T  45194176 cgggcggtgaaac 45194164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 143 - 197
Target Start/End: Complemental strand, 17555032 - 17554978
Alignment:
Q  143 attatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccacccc 197  Q
    |||||||||||||||||||||||| |||||||||| ||| |||||||||| ||||    
T  17555032 attatcgatcgagcccgggcgaccacccggggtcgtcggacggtgaaaccgcccc 17554978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 95 - 200
Target Start/End: Complemental strand, 27363446 - 27363340
Alignment:
Q  95 tttttgtaagtctgttaattagcttttgg-ttaggtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaacca 193  Q
    ||||||||||| |||||||  |||||||| || || ||||| ||||||||   ||||||||||||||||||||||||| |||||||   |||| |||||     
T  27363446 tttttgtaagtgtgttaatgggcttttgggttgggcctaatatgcaaaaaaattcgatcgagcccgggcgaccgcccgaggtcgccatacggtaaaaccg 27363347  T
Q  194 cccctgg 200  Q
    |||||||    
T  27363346 cccctgg 27363340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 413 - 479
Target Start/End: Original strand, 35088800 - 35088866
Alignment:
Q  413 aaatcaaggatttaggtcaactcaaatattttcttggtattgaagtagctcattccaaagctggcat 479  Q
    ||||||||||| | |||||||||||||| || ||||||||||| || |||||||||||||| |||||    
T  35088800 aaatcaaggatcttggtcaactcaaatacttccttggtattgaggttgctcattccaaagcaggcat 35088866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 142 - 192
Target Start/End: Original strand, 50720476 - 50720526
Alignment:
Q  142 aattatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaacc 192  Q
    |||||| ||| ||||||||||||||||||| ||||||||||||||||||||    
T  50720476 aattattgattgagcccgggcgaccgcccgaggtcgccgggcggtgaaacc 50720526  T

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Target: chr4; HSP #41
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 143 - 199
Target Start/End: Original strand, 12680193 - 12680249
Alignment:
Q  143 attatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccacccctg 199  Q
    |||||||||||||||||||| |||||| ||||| || ||||||||||||| ||||||    
T  12680193 attatcgatcgagcccgggccaccgcctggggttgctgggcggtgaaaccgcccctg 12680249  T

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Target: chr4; HSP #42
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 87 - 154
Target Start/End: Complemental strand, 6254637 - 6254569
Alignment:
Q  87 aatttttctttttgtaagtctgttaattagcttttgg-ttaggtctaatgtgcaaaaattatcgatcga 154  Q
    ||||||| |||||| |||| ||||||||  ||||||| || ||| ||||||||||||||||||||||||    
T  6254637 aatttttttttttgcaagtgtgttaattgtcttttgggttgggtttaatgtgcaaaaattatcgatcga 6254569  T

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Target: chr4; HSP #43
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 13 - 47
Target Start/End: Complemental strand, 30110142 - 30110108
Alignment:
Q  13 gagatgaacctgtcaatagtgtgctaaataaaatt 47  Q
    |||||||||| ||||||||||||||||||||||||    
T  30110142 gagatgaacccgtcaatagtgtgctaaataaaatt 30110108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 13 - 47
Target Start/End: Complemental strand, 48130145 - 48130111
Alignment:
Q  13 gagatgaacctgtcaatagtgtgctaaataaaatt 47  Q
    |||||||||| ||||||||||||||||||||||||    
T  48130145 gagatgaacccgtcaatagtgtgctaaataaaatt 48130111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 19 - 47
Target Start/End: Complemental strand, 4325575 - 4325547
Alignment:
Q  19 aacctgtcaatagtgtgctaaataaaatt 47  Q
    |||||||||||||||||||||||||||||    
T  4325575 aacctgtcaatagtgtgctaaataaaatt 4325547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 140; Significance: 6e-73; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 140; E-Value: 6e-73
Query Start/End: Original strand, 13 - 199
Target Start/End: Complemental strand, 23402275 - 23402088
Alignment:
Q  13 gagatgaacctgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtctgttaa 112  Q
    |||||||||| |||||||||||| ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  23402275 gagatgaaccagtcaatagtgtgttaaataaaatttcgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaa 23402176  T
Q  113 ttagctttt-ggttaggtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccacccctg 199  Q
    || |||||| |||| |||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  23402175 ttggcttttgggttgggtctaatatgcaaagattatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccgcccctg 23402088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 133; E-Value: 8e-69
Query Start/End: Original strand, 13 - 192
Target Start/End: Original strand, 16788025 - 16788205
Alignment:
Q  13 gagatgaacctgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtctgttaa 112  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| ||||||    
T  16788025 gagatgaacccgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgagagttttaagattgcccaaatttttctttttgtaagtgtgttaa 16788124  T
Q  113 ttagctttt-ggttaggtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaacc 192  Q
    || |||||| ||||  |||||||||||||||||||||||||||||||||||||||||||||||| |||||||  |||||||    
T  16788125 ttggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggttgccgggcaatgaaacc 16788205  T

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Target: chr8; HSP #3
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 13 - 201
Target Start/End: Original strand, 34136825 - 34137014
Alignment:
Q  13 gagatgaacctgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtctgttaa 112  Q
    ||||||||||  ||||| ||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  34136825 gagatgaacccatcaattgtgtgctaaataaaatttcgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaa 34136924  T
Q  113 ttagctttt-ggttaggtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccacccctggc 201  Q
    ||  ||||| ||||  ||||||||||||||||||||||||||||||||||||||||| |||||||||| | |||||||||||||| ||||    
T  34136925 ttgacttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgctcggggtcgccagacggtgaaaccacccatggc 34137014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 13 - 192
Target Start/End: Complemental strand, 4404175 - 4403995
Alignment:
Q  13 gagatgaacctgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtctgttaa 112  Q
    ||||||||||  ||||| ||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||    
T  4404175 gagatgaacccatcaattgtgtgctaaataaaattccgagacctatttgcgtgtgagaatttttagattgcccaaatttttctttttgtaagtatgttaa 4404076  T
Q  113 ttagctttt-ggttaggtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaacc 192  Q
    || |||||| ||||  |||||||||||||||||||||||||||||||||||||||||| ||||||||||| | ||||||||    
T  4404075 ttggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcctggggtcgccggccagtgaaacc 4403995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 13 - 179
Target Start/End: Original strand, 29728386 - 29728553
Alignment:
Q  13 gagatgaacctgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtctgttaa 112  Q
    |||||||||| ||||||||||||||||||||||||| ||||||||||||||||| | |||||||||||||||||||||||||||||||||| | ||||||    
T  29728386 gagatgaacccgtcaatagtgtgctaaataaaattcgaagacctatttgcgtgtcacaattttcagattgcccaaatttttctttttgtaaatgtgttaa 29728485  T
Q  113 ttagctttt-ggttaggtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgcc 179  Q
    | ||||||| ||||  ||||||||||||||| ||||||||||||| |||||||||| |||||||||||    
T  29728486 tgagcttttgggttgagtctaatgtgcaaaatttatcgatcgagcacgggcgaccgtccggggtcgcc 29728553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 13 - 199
Target Start/End: Complemental strand, 36408718 - 36408531
Alignment:
Q  13 gagatgaacctgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtctgttaa 112  Q
    |||||||| | | |||||||||| ||||||||||||  ||||||||| |||||| |||||||||| |||||| ||| |||||||||||||| | ||||||    
T  36408718 gagatgaatccggcaatagtgtgttaaataaaattctgagacctattagcgtgtaagaattttcaaattgccaaaaattttctttttgtaaatgtgttaa 36408619  T
Q  113 ttagcttttggttagg-tctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccacccctg 199  Q
    |   ||||||| | || ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  36408618 tggacttttgggttggatctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccgaggtcgccgggcggtgaaaccacccctg 36408531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 13 - 178
Target Start/End: Complemental strand, 39914681 - 39914516
Alignment:
Q  13 gagatgaacctgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtctgttaa 112  Q
    |||||||| ||||||||||||||| ||||||||||||||||||||||| | ||||| |||||||| ||||||||||||||| ||||| ||| | ||||||    
T  39914681 gagatgaaactgtcaatagtgtgccaaataaaattccaagacctatttacttgtgacaattttcaaattgcccaaattttt-tttttataaatgtgttaa 39914583  T
Q  113 ttagc-ttttggttaggtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgc 178  Q
    | ||| ||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39914582 tgagctttttggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgc 39914516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 16 - 179
Target Start/End: Complemental strand, 15838449 - 15838286
Alignment:
Q  16 atgaacctgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtctgttaat-t 114  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| | |||||||      
T  15838449 atgaacccgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgaaaattttcagattgcccaaatttttc-ttttgtaaatgtgttaatgg 15838351  T
Q  115 agcttttggttaggtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgcc 179  Q
    |  ||||||||  || |||||||||||||||||| |||||||||||| |||||||||||||||||    
T  15838350 actttttggttgagtttaatgtgcaaaaattatcaatcgagcccgggtgaccgcccggggtcgcc 15838286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 13 - 165
Target Start/End: Original strand, 3648794 - 3648947
Alignment:
Q  13 gagatgaacctgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtctgttaa 112  Q
    |||||||||| |||||||||||||||||||||||||||| ||||| |||||||||| ||||||||||||||||||| |||||||||||||| | ||||||    
T  3648794 gagatgaacccgtcaatagtgtgctaaataaaattccaaaacctacttgcgtgtgacaattttcagattgcccaaaattttctttttgtaaatgtgttaa 3648893  T
Q  113 ttagctttt-ggttaggtctaatgtgcaaaaattatcgatcgagcccgggcgac 165  Q
    |  |||||| ||||  |||||||||| |||||||||||||||||||||||||||    
T  3648894 tgggcttttgggttgagtctaatgtgaaaaaattatcgatcgagcccgggcgac 3648947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 13 - 157
Target Start/End: Complemental strand, 9877387 - 9877242
Alignment:
Q  13 gagatgaacctgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtctgttaa 112  Q
    ||||||||  || |||||||||||||||||||||| | |||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||    
T  9877387 gagatgaatttgacaatagtgtgctaaataaaatttcgagacctatttgcatgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaa 9877288  T
Q  113 ttagctttt-ggttaggtctaatgtgcaaaaattatcgatcgagcc 157  Q
    ||  ||||| ||||||||||||||||||||||||||| ||||||||    
T  9877287 ttgacttttgggttaggtctaatgtgcaaaaattatcaatcgagcc 9877242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 25 - 198
Target Start/End: Original strand, 2729208 - 2729382
Alignment:
Q  25 tcaatagtgtgctaaataaaattccaagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtctgttaattagcttttggt 124  Q
    |||||||||||||||||||||||   |||||||||||||| ||||| |||||| |||||| |||  ||||||||| ||||| |||||||  ||||||||     
T  2729208 tcaatagtgtgctaaataaaattttgagacctatttgcgtatgagagttttcaaattgccaaaaaatttctttttataagtgtgttaatgggcttttgga 2729307  T
Q  125 tagg-tctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccacccct 198  Q
    | || | ||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||    
T  2729308 ttggatttaatgtgtaaaaattatcgatcgagcccgggcgtccgcccggggtcgccgggcggtgaaaccgcccct 2729382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 54 - 163
Target Start/End: Complemental strand, 3435397 - 3435285
Alignment:
Q  54 cctatttgcgtgtgagaattttcagatt--gcccaaatttttctttttgtaagtctgttaattagcttttgg-ttaggtctaatgtgcaaaaattatcga 150  Q
    ||||||||||| ||||||||||||||||  |||||||||||||||||||||||| |||||||  | |||||| || ||||||||||||||||||||||||    
T  3435397 cctatttgcgtttgagaattttcagattttgcccaaatttttctttttgtaagtgtgttaatgggtttttgggttgggtctaatgtgcaaaaattatcga 3435298  T
Q  151 tcgagcccgggcg 163  Q
    || ||||||||||    
T  3435297 tcaagcccgggcg 3435285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 13 - 105
Target Start/End: Complemental strand, 42231104 - 42231012
Alignment:
Q  13 gagatgaacctgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagt 105  Q
    |||||||| | |||||||||||||||||||||||||  |||||||||||| | |||||||||||| |||||||||||||||||||||||||||    
T  42231104 gagatgaatccgtcaatagtgtgctaaataaaattctgagacctatttgcatatgagaattttcaaattgcccaaatttttctttttgtaagt 42231012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 130 - 195
Target Start/End: Original strand, 10397158 - 10397223
Alignment:
Q  130 ctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccacc 195  Q
    |||||||| | ||||||||||| ||||||||||||  |||||| |||||||||||||| |||||||    
T  10397158 ctaatgtgaagaaattatcgattgagcccgggcgagtgcccggagtcgccgggcggtgtaaccacc 10397223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 13 - 47
Target Start/End: Original strand, 40470475 - 40470509
Alignment:
Q  13 gagatgaacctgtcaatagtgtgctaaataaaatt 47  Q
    |||||||||| ||||||||||||||||||||||||    
T  40470475 gagatgaacccgtcaatagtgtgctaaataaaatt 40470509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 87 - 156
Target Start/End: Original strand, 40470567 - 40470637
Alignment:
Q  87 aatttttctttttgtaagtctgttaattagcttttggttagg-tctaatgtgcaaaaattatcgatcgagc 156  Q
    ||||||| ||||| ||||| |||||||   |||||| || || ||||||||||||||||||||||||||||    
T  40470567 aatttttttttttataagtgtgttaatggacttttgatttgggtctaatgtgcaaaaattatcgatcgagc 40470637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0502 (Bit Score: 124; Significance: 2e-63; HSPs: 1)
Name: scaffold0502
Description:

Target: scaffold0502; HSP #1
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 13 - 179
Target Start/End: Complemental strand, 5397 - 5230
Alignment:
Q  13 gagatgaacctgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtctgttaa 112  Q
    |||||||||| |||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| |||||||||||||||| ||||||    
T  5397 gagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcatgtgagaattttcagattgcccaaaattttctttttgtaagtgtgttaa 5298  T
Q  113 ttagctttt-ggttaggtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgcc 179  Q
    || |||||| | || ||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  5297 ttggcttttagattgggtctaatgtgcaaaaattattgatcgagcccgggcgaccgcccggggtcgcc 5230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 124; Significance: 2e-63; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 13 - 199
Target Start/End: Complemental strand, 31647 - 31460
Alignment:
Q  13 gagatgaacctgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtctgttaa 112  Q
    |||||||||||||||||||||||| |||||||||| | ||||||||||||| |||||||||||||||||| |||||||||||||||||||||| ||||||    
T  31647 gagatgaacctgtcaatagtgtgcaaaataaaattactagacctatttgcgagtgagaattttcagattgtccaaatttttctttttgtaagtgtgttaa 31548  T
Q  113 ttagctttt-ggttaggtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccacccctg 199  Q
    |  |||||| |||| |||||| |||||||||||||||||||||||||||||||||| | |||||||||||||| ||||||| ||||||    
T  31547 tgggcttttgggttgggtctagtgtgcaaaaattatcgatcgagcccgggcgaccgtctggggtcgccgggcgatgaaaccgcccctg 31460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 121; Significance: 1e-61; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 13 - 192
Target Start/End: Complemental strand, 35907719 - 35907539
Alignment:
Q  13 gagatgaacctgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtctgttaa 112  Q
    |||||||||  ||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| |||||||||||||||| |  |||    
T  35907719 gagatgaactcgtcaataatgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattacccaaaattttctttttgtaagtgtactaa 35907620  T
Q  113 ttagctttt-ggttaggtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaacc 192  Q
    || |||||| |||| |||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||    
T  35907619 ttggcttttgggttgggtctaatgtgcaaaaattatcgatcaagcccgggcgaccgcccgaggtcgccgggcggtgaaacc 35907539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 14 - 199
Target Start/End: Complemental strand, 17445479 - 17445293
Alignment:
Q  14 agatgaacctgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtctgttaat 113  Q
    ||||||||| ||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  17445479 agatgaacccgtcaataatgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaat 17445380  T
Q  114 tagctttt-ggttaggtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccacccctg 199  Q
    |  ||||| |||| | |||||||| |||||||||| |||| |||||||||||||||  |||||||||||||  ||||||| ||||||    
T  17445379 tgacttttgggttggatctaatgtacaaaaattattgatccagcccgggcgaccgcatggggtcgccgggcaatgaaaccgcccctg 17445293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 13 - 178
Target Start/End: Complemental strand, 26144422 - 26144256
Alignment:
Q  13 gagatgaacctgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtctgttaa 112  Q
    |||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||| |||||||| ||||||||||||||||||||| ||| | ||||||    
T  26144422 gagatgaaactgtcaatagtgtgccaaataaaattccaagacctatttacgtgtgacaattttcaaattgcccaaatttttctttttataaatgtgttaa 26144323  T
Q  113 ttagc-ttttggttaggtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgc 178  Q
    | ||| ||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26144322 tgagctttttggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgc 26144256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 13 - 179
Target Start/End: Original strand, 32982056 - 32982223
Alignment:
Q  13 gagatgaacctgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtctgttaa 112  Q
    |||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| ||||||||||||| |||||||||||||||||||| | ||||||    
T  32982056 gagatgaatctgtcaatagagtgctaaataaaattccaagacctatttgtgtgtgacaattttcagattgtccaaatttttctttttgtaaatatgttaa 32982155  T
Q  113 ttagctttt-ggttaggtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgcc 179  Q
    |  |||||| |||| ||||||||||||||||||||||||||| ||||| |||||||||||||||||||    
T  32982156 tgggcttttaggttgggtctaatgtgcaaaaattatcgatcgggcccgcgcgaccgcccggggtcgcc 32982223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 13 - 192
Target Start/End: Complemental strand, 3829150 - 3828971
Alignment:
Q  13 gagatgaacctgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtctgttaa 112  Q
    |||||||||| ||||||||||||||||||||||||||| ||||||||||||| ||| |||||||||||||||||||||||||||||||||||| ||||||    
T  3829150 gagatgaacccgtcaatagtgtgctaaataaaattcca-gacctatttgcgtatgaaaattttcagattgcccaaatttttctttttgtaagtgtgttaa 3829052  T
Q  113 ttagctttt-ggttaggtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaacc 192  Q
    | | ||||| |||| ||| |||||||||||||||||||||||| |||| ||||||| ||||||| |||||| | |||||||    
T  3829051 tgaacttttgggttgggtttaatgtgcaaaaattatcgatcgaacccgagcgaccgtccggggttgccgggtgatgaaacc 3828971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 16 - 175
Target Start/End: Complemental strand, 7433609 - 7433449
Alignment:
Q  16 atgaacctgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtctgttaatta 115  Q
    ||||||| |||||||||||||||||||||||| ||||||||||||| |||||| |||||| |||||||||||| |||||||||||||| | |||||||      
T  7433609 atgaacccgtcaatagtgtgctaaataaaatttcaagacctatttgtgtgtgacaatttttagattgcccaaaattttctttttgtaaatgtgttaatgg 7433510  T
Q  116 gctttt-ggttaggtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggt 175  Q
    |||||| ||||  |||||||||||||||||||| |||||||| ||||||||||||||||||    
T  7433509 gcttttgggttgagtctaatgtgcaaaaattatagatcgagctcgggcgaccgcccggggt 7433449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 13 - 179
Target Start/End: Original strand, 42310941 - 42311108
Alignment:
Q  13 gagatgaacctgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtctgttaa 112  Q
    |||||||||| |||||||| || |||||||||||| |||||| ||||||||||||| |||||||||||||||||||||||||||||||||| | ||||||    
T  42310941 gagatgaacccgtcaatagcgtactaaataaaatttcaagacttatttgcgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaa 42311040  T
Q  113 ttagctttt-ggttaggtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgcc 179  Q
       |||||| ||||  ||||||||||||||||||||||||||||||||||||| || | |||||||||    
T  42311041 cgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgatcgtctggggtcgcc 42311108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 13 - 192
Target Start/End: Original strand, 321377 - 321557
Alignment:
Q  13 gagatgaacctgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtctgttaa 112  Q
    |||||||||| ||||||| |||| ||||||||||||| |||||||||||| | |||||||||||||||||||||||||||||||||||||| | ||||||    
T  321377 gagatgaacccgtcaataatgtgttaaataaaattccgagacctatttgcatatgagaattttcagattgcccaaatttttctttttgtaactgtgttaa 321476  T
Q  113 ttagctttt-ggttaggtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaacc 192  Q
    |   ||||| |||| | |||||||  ||||||||||||||||||||||| ||||||||||   |||||||| |||||||||    
T  321477 tggacttttgggttggatctaatgcacaaaaattatcgatcgagcccggacgaccgcccgaaatcgccgggtggtgaaacc 321557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 54 - 200
Target Start/End: Original strand, 41972314 - 41972462
Alignment:
Q  54 cctatttgcgtgtgagaattttcagattgc--ccaaatttttctttttgtaagtctgttaattagctttt-ggttaggtctaatgtgcaaaaattatcga 150  Q
    ||||||||||||||||||||||||||||    |||||||||||||||||||||| |||||||  |||||| |||| | ||||||||||||||||||||||    
T  41972314 cctatttgcgtgtgagaattttcagattttttccaaatttttctttttgtaagtgtgttaataggcttttaggttggatctaatgtgcaaaaattatcga 41972413  T
Q  151 tcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccacccctgg 200  Q
    ||||| || ||||||||||||||||||| || ||||| |||| |||||||    
T  41972414 tcgag-ccaggcgaccgcccggggtcgctggacggtggaaccgcccctgg 41972462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 54 - 200
Target Start/End: Complemental strand, 33489815 - 33489666
Alignment:
Q  54 cctatttgcgtgtgagaattttcagatt--gcccaaatttttctttttgtaagtctgttaattagcttttggttag-gtctaatgtgcaaaaattatcga 150  Q
    ||||||||||||||||||||||||||||  || |||||||||||||| |||||| |||||||  |||||| ||| | ||||||||| |||||||||||||    
T  33489815 cctatttgcgtgtgagaattttcagattttgctcaaatttttcttttagtaagtgtgttaatgggcttttagtttgagtctaatgtacaaaaattatcga 33489716  T
Q  151 tcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccacccctgg 200  Q
     | | ||||  |||||| |||||||||||||| ||||||||| |||||||    
T  33489715 acaatcccgaacgaccgtccggggtcgccgggtggtgaaaccgcccctgg 33489666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 142 - 198
Target Start/End: Complemental strand, 31867014 - 31866958
Alignment:
Q  142 aattatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccacccct 198  Q
    |||||||| |||| ||||||||||||||||||||||||||||||||||||| |||||    
T  31867014 aattatcggtcgaacccgggcgaccgcccggggtcgccgggcggtgaaaccgcccct 31866958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 74 - 171
Target Start/End: Complemental strand, 23313345 - 23313246
Alignment:
Q  74 ttcagattgcccaaatttttctttttgtaagtctgttaattagctttt-ggttaggtctaatgtgcaa-aaattatcgatcgagcccgggcgaccgcccg 171  Q
    |||||||||||||||||||||||||||||| | ||||||| | |||||  |||  ||||||||||||| |||| ||| ||||||||||||| ||||||||    
T  23313345 ttcagattgcccaaatttttctttttgtaaatgtgttaatgaacttttatgttgagtctaatgtgcaacaaatcatcaatcgagcccgggcaaccgcccg 23313246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 143 - 199
Target Start/End: Original strand, 44352614 - 44352670
Alignment:
Q  143 attatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccacccctg 199  Q
    |||||||||||||||||||||||| ||||||||||||||  ||||||||| ||||||    
T  44352614 attatcgatcgagcccgggcgacctcccggggtcgccggatggtgaaaccgcccctg 44352670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 404 - 470
Target Start/End: Original strand, 52779302 - 52779368
Alignment:
Q  404 cttcatttcaaatcaaggatttaggtcaactcaaatattttcttggtattgaagtagctcattccaa 470  Q
    |||||||| ||||||| || ||||| || || ||||||||||||||||||||||| ||||| |||||    
T  52779302 cttcatttaaaatcaaagacttaggccagcttaaatattttcttggtattgaagttgctcactccaa 52779368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 130 - 199
Target Start/End: Original strand, 48901223 - 48901291
Alignment:
Q  130 ctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccacccctg 199  Q
    |||||||||| |||||||||||||| ||| ||| ||||||||| || ||||||||||| |||| ||||||    
T  48901223 ctaatgtgcataaattatcgatcga-ccccggccaccgcccggagttgccgggcggtggaaccgcccctg 48901291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 13 - 47
Target Start/End: Complemental strand, 33489873 - 33489839
Alignment:
Q  13 gagatgaacctgtcaatagtgtgctaaataaaatt 47  Q
    |||||||||| ||||||||||||||||||||||||    
T  33489873 gagatgaacccgtcaatagtgtgctaaataaaatt 33489839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 13 - 47
Target Start/End: Original strand, 41972256 - 41972290
Alignment:
Q  13 gagatgaacctgtcaatagtgtgctaaataaaatt 47  Q
    |||||||||| ||||||||||||||||||||||||    
T  41972256 gagatgaacccgtcaatagtgtgctaaataaaatt 41972290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 19 - 47
Target Start/End: Complemental strand, 25017550 - 25017522
Alignment:
Q  19 aacctgtcaatagtgtgctaaataaaatt 47  Q
    |||||||||||||||||||||||||||||    
T  25017550 aacctgtcaatagtgtgctaaataaaatt 25017522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 19 - 47
Target Start/End: Original strand, 32379867 - 32379895
Alignment:
Q  19 aacctgtcaatagtgtgctaaataaaatt 47  Q
    |||||||||||||||||||||||||||||    
T  32379867 aacctgtcaatagtgtgctaaataaaatt 32379895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 115; Significance: 5e-58; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 13 - 178
Target Start/End: Original strand, 480457 - 480623
Alignment:
Q  13 gagatgaacctgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtctgttaa 112  Q
    |||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||| |||||||| ||||||||||||||||||||| ||| | ||||||    
T  480457 gagatgaaactgtcaatagtgtgccaaataaaattccaagacctatttacgtgtgacaattttcaaattgcccaaatttttctttttataaatgtgttaa 480556  T
Q  113 ttagc-ttttggttaggtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgc 178  Q
    | ||| ||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  480557 tgagctttttggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgc 480623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2142 (Bit Score: 111; Significance: 1e-55; HSPs: 1)
Name: scaffold2142
Description:

Target: scaffold2142; HSP #1
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 13 - 178
Target Start/End: Complemental strand, 689 - 523
Alignment:
Q  13 gagatgaacctgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtctgttaa 112  Q
    |||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||| |||||||| ||||||||||||||||||||| ||| | ||||||    
T  689 gagatgaaactgtcaatagtgtgccaaataaaattccaagacctatttacgtgtgacaattttcaaattgcccaaatttttctttttataaatgtgttaa 590  T
Q  113 ttagc-ttttggttaggtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgc 178  Q
    | ||| ||||||||  |||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  589 tgagctttttggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccgggatcgc 523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 105; Significance: 4e-52; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 13 - 160
Target Start/End: Complemental strand, 53092 - 52944
Alignment:
Q  13 gagatgaacctgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtctgttaa 112  Q
    |||||||||| |||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| |||||||||||||||||||| | ||||||    
T  53092 gagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcatgtgagaattttcagattgtccaaatttttctttttgtaaatgtgttaa 52993  T
Q  113 ttagctttt-ggttaggtctaatgtgcaaaaattatcgatcgagcccgg 160  Q
    || |||||| |||||  ||||||||||||||||||||||||||||||||    
T  52992 ttggcttttgggttaaatctaatgtgcaaaaattatcgatcgagcccgg 52944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 104; Significance: 2e-51; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 13 - 179
Target Start/End: Complemental strand, 18009 - 17842
Alignment:
Q  13 gagatgaacctgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtctgttaa 112  Q
    |||||||| |||||||||||||||||||||||||| |||||||||||| | ||||| |||||||||||||||||||||||||||||||||| | ||||||    
T  18009 gagatgaaactgtcaatagtgtgctaaataaaatttcaagacctatttacatgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaa 17910  T
Q  113 ttagctttt-ggttaggtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgcc 179  Q
    |  |||||| ||||  ||||||||||||||||||||||||||||||||| ||| ||| ||||||||||    
T  17909 tgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccggacgatcgctcggggtcgcc 17842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0769 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 1)
Name: scaffold0769
Description:

Target: scaffold0769; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 149 - 197
Target Start/End: Complemental strand, 1307 - 1259
Alignment:
Q  149 gatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccacccc 197  Q
    |||||||||||||||||||||||||||||||||||||| ||||| ||||    
T  1307 gatcgagcccgggcgaccgcccggggtcgccgggcggtaaaaccgcccc 1259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 149 - 186
Target Start/End: Complemental strand, 194058 - 194021
Alignment:
Q  149 gatcgagcccgggcgaccgcccggggtcgccgggcggt 186  Q
    ||||||||||||||||||||||||||||||||||||||    
T  194058 gatcgagcccgggcgaccgcccggggtcgccgggcggt 194021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0329 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0329
Description:

Target: scaffold0329; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 404 - 470
Target Start/End: Original strand, 12631 - 12697
Alignment:
Q  404 cttcatttcaaatcaaggatttaggtcaactcaaatattttcttggtattgaagtagctcattccaa 470  Q
    |||||||| ||||||| || ||||| || || ||||||||||||||||||||||| ||||| |||||    
T  12631 cttcatttaaaatcaaagacttaggccagcttaaatattttcttggtattgaagttgctcactccaa 12697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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