View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2247_high_4 (Length: 657)
Name: NF2247_high_4
Description: NF2247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2247_high_4 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 623; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 623; E-Value: 0
Query Start/End: Original strand, 18 - 651
Target Start/End: Original strand, 28914489 - 28915123
Alignment:
| Q |
18 |
taaccatctagtcttccctcactttaataactgaaactctta-tagattccaataaatgttgcaactattgcatatgtggcattaaatctatagtatgct |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28914489 |
taaccatctagtcttccctcactttaataactgaaactcttactagattccaataaatgttgcaactattgcatatgtggcattaaatctatagtatgct |
28914588 |
T |
|
| Q |
117 |
tatgtttctcaatcggctgttggtattaatgctcatcattgcttctcccatgtgaattaaatcgcatcccgtgtgacccttctccttttcccaccagtta |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28914589 |
tatgtttctcaatcggctgttggtattaatgctcatcattgcttctcccatgtgaattaaatcgcatcccgtgtgacccttctccttttcccaccagtta |
28914688 |
T |
|
| Q |
217 |
aatggccccttctctatgccattgacacatattagcttcaatcacataacattacttattaagaaatgttacattaggcgtgaaatgaaaagacaggccc |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28914689 |
aatggccccttctctatgccattgacacatattagcttcaatcacataacattacttattaagaaatgttacattaggcgtgaaatgaaaagacaggccc |
28914788 |
T |
|
| Q |
317 |
taataaccatgtggagatatagctttctataatttctacaatggaataaatagacgttgacatcaatgtcgaagagtcaaaacatgtattggctactacc |
416 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
28914789 |
taataaccatgtggagatatagctttctataatttctacaatggaataaatagacgttgacatcaatgtcgaagagtcaaaacatgtgttggctactacc |
28914888 |
T |
|
| Q |
417 |
tttacattttaattaccaaacgaaaaaatgaatattagattttatcaagcatgtgttcaggtgaggatctgttgcatttatatttcaggcaaaagaatag |
516 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28914889 |
tttacattttaattaccaaacgaaaaaatgaatattagattttatcaagcatgtgttcaggtgaggatctgttgcatttatatttcaggcaaaagaatag |
28914988 |
T |
|
| Q |
517 |
ttgaaacaagtgaatagcattaatttaatgcttgattgcaaagaaattggtatatcagtagactagtagatagctacaaaaattaatatcctctagctta |
616 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28914989 |
ttgaaacaagtgaatagcattaatttaatgcttgattgcaaagaaattggtatatcagtagactagtagatagctacaaaaattaatatcctctagctta |
28915088 |
T |
|
| Q |
617 |
agtctcaaacttgatctatggatacctgatgatgt |
651 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
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| T |
28915089 |
agtctcaaacttgatctatggatacctgatgatgt |
28915123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 92 - 570
Target Start/End: Original strand, 28923801 - 28924272
Alignment:
| Q |
92 |
tgtggcattaaatctatagtatgcttatgtttctcaatcggctgttggtattaatgctcatcattgcttctcccatgtgaattaaatcgcatcccgtgtg |
191 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||||||| ||||| ||| |||| ||||| || | |
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|
| T |
28923801 |
tgtggcattaaatctatagtatgcttttgtttctcaatgagctgttggtattt----------ttgcttctcccctgtgatttacatcgtatcccatgcg |
28923890 |
T |
|
| Q |
192 |
acccttctccttttcccaccagttaaatggccccttctctatgccattgacac-----atattagcttcaatcacataacattacttattaagaaatgtt |
286 |
Q |
| |
|
|||| ||||||||||||||| ||| || |||||||||| |||||||||||| |||||||||||||||| || ||||||| ||||| ||||| | |
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|
| T |
28923891 |
acccctctccttttcccaccggttcaacggccccttct--atgccattgacatgtataatattagcttcaatcatatgacattacacattaataaatgct |
28923988 |
T |
|
| Q |
287 |
acattaggcgtgaaatgaaaagacaggccctaataaccatgtggagatatagctttctataatttctacaatggaataaatagacgttgacatcaatgtc |
386 |
Q |
| |
|
||||| |||||||| |||||||||| ||||||||||||||||||| |||||||||||||| ||||||||||||||| |||||||| ||||| |||||||| |
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|
| T |
28923989 |
acattgggcgtgaagtgaaaagacatgccctaataaccatgtggacatatagctttctatgatttctacaatggaagaaatagactttgacttcaatgtc |
28924088 |
T |
|
| Q |
387 |
gaagagtcaaaacatgtattggctactacctttacattttaattaccaaacgaaaaaatgaatattagattttatcaagcatgtgttcaggtgaggatct |
486 |
Q |
| |
|
||||||||||||||| | |||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||||| | |||||||||||| |
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|
| T |
28924089 |
aaagagtcaaaacatgcactggctactacctttacattttaattatcaaacaaaataatgaatattagattttatcaagcatgtggtaaggtgaggatct |
28924188 |
T |
|
| Q |
487 |
gttgcatttatatttcaggcaaaagaatagttgaaacaagtgaatagcattaatttaatgcttgattgcaaagaaattggtata |
570 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| |||| |||||||||||||| |
|
|
| T |
28924189 |
gttacatttatatttcaggcaaaagaatagttgaaacaagtgaacagcattaatttaaggctagattttgaagaaattggtata |
28924272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 225; E-Value: 1e-123
Query Start/End: Original strand, 100 - 647
Target Start/End: Original strand, 28900138 - 28900684
Alignment:
| Q |
100 |
taaatctatagtatgcttatgtttctcaatcggctgttggtattaatgctcatcattgcttctcccatgtgaattaaatcgcatcccgtgtgacccttct |
199 |
Q |
| |
|
||||| |||||||||||| |||||||||| | ||||| ||||| ||||| |||||||||||||| ||||| ||| || | ||||| |||||||| ||| |
|
|
| T |
28900138 |
taaatatatagtatgcttctgtttctcaagaagttgttgatattattgctcctcattgcttctcccctgtgatttacattgtatcccatgtgacccctct |
28900237 |
T |
|
| Q |
200 |
ccttttcccaccagttaaatggccccttctctatgccattgacacatattagcttcaatcacataacattacttattaagaaatgttacattaggcgtga |
299 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||||||||||||||| |||||||||| | ||| || ||||||| |||| |||| || ||| | | ||| |
|
|
| T |
28900238 |
ccttttcccatcagttcaatggccccttctctatgccattgacatatattagctttagtcatatgacattacacattagtgaatgatatattggacatga |
28900337 |
T |
|
| Q |
300 |
aatgaaaagacaggccctaataaccatgtggagatatagctttctataatttctacaatggaataaat-agacgttgacatcaatgtcgaagagtcaaaa |
398 |
Q |
| |
|
| | |||||||| ||| |||||||||| ||||||||||||||||||| ||||||||||| ||| |||| |||| || | ||| ||| |||||||||||| |
|
|
| T |
28900338 |
agttaaaagacaagccttaataaccatttggagatatagctttctatgatttctacaattgaagaaattagacatttgcttcattgttgaagagtcaaaa |
28900437 |
T |
|
| Q |
399 |
catgtattggctactacctttacattttaattaccaaacgaaaaaatgaatattagattttatcaagcatgtgttcaggtgaggatctgttgcatttata |
498 |
Q |
| |
|
||||||||||||||||||| |||| ||||||||||||| || ||||||| | ||||||||||||||||||| | |||||||| ||||||||||||||| |
|
|
| T |
28900438 |
-atgtattggctactaccttaacatgttaattaccaaacaaagtaatgaatttaagattttatcaagcatgtggtaaggtgagggtctgttgcatttata |
28900536 |
T |
|
| Q |
499 |
tttcaggcaaaagaatagttgaaacaagtgaatagcattaatttaatgcttgattgcaaagaaattggtatatcagtagactagtagatagctacaaaaa |
598 |
Q |
| |
|
|||| |||||||||||||||||||||||||| ||| || |||| || ||| |||| |||||||||||||| || ||||| |||||||||| |||| | |
|
|
| T |
28900537 |
tttc-ggcaaaagaatagttgaaacaagtgactaggataaattaaaggctagattttgaagaaattggtataatagaagactcgtagatagctgcaaata |
28900635 |
T |
|
| Q |
599 |
ttaatatcctctagcttaagtctcaaacttgatctatggatacctgatg |
647 |
Q |
| |
|
||||||| |||||||||| ||||||| |||||||||||||||||||||| |
|
|
| T |
28900636 |
ttaatatactctagcttatgtctcaagcttgatctatggatacctgatg |
28900684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 252 - 647
Target Start/End: Original strand, 28932823 - 28933225
Alignment:
| Q |
252 |
cttcaatcacataacattacttattaagaaatgttacattaggcgtgaaatgaaaagacaggccctaataaccatgtggagatatagctttctataattt |
351 |
Q |
| |
|
|||||||||||| | ||| | |||||| ||||||| ||| | |||| ||||||||||||| |||||||||||| |||||||||||||||| ||| |
|
|
| T |
28932823 |
cttcaatcacatgatattgcatattaatgaatgttatattggatgtgaggtgaaaagacaggctctaataaccatgcatagatatagctttctatgatta |
28932922 |
T |
|
| Q |
352 |
ctacaatggaataaatag-------ac-gttgacatcaatgtcgaagagtcaaaacatgtattggctactacctttacattttaa-ttaccaaacgaaaa |
442 |
Q |
| |
|
||||||||||| |||| | || |||||| |||| | |||||||||||||||||||||||||||||||||||||||||| ||||||| | | || |
|
|
| T |
28932923 |
ctacaatggaagaaattgggctttgacagttgacttcaacgcagaagagtcaaaacatgtattggctactacctttacattttaacttaccaagc-ataa |
28933021 |
T |
|
| Q |
443 |
aatgaatattagattttatcaagcatgtgttcaggtgaggatctgttgcatttatatttcaggcaaaagaatagttgaaacaagtgaatagcattaattt |
542 |
Q |
| |
|
||||| || |||| ||||| |||||||| | ||| | ||| ||||||||||||| ||||||||||||||||| ||||| | |||||||||||| |
|
|
| T |
28933022 |
tatgaacatgagatattatccagcatgtggtaaggcatgaatccattgcatttatatt-caggcaaaagaatagtttaaacatgcgaatagcattaaccg |
28933120 |
T |
|
| Q |
543 |
aatgcttgattgcaaagaaattggtatatcagtagactagtagatagctacaaaaattaatatcctctagcttaagtctcaaacttgatctatggatacc |
642 |
Q |
| |
|
|| | | |||| |||||||||||||| |||||||||||||||||||| ||| ||||| || |||||||||||||||||||||||||||||||||||| |
|
|
| T |
28933121 |
aaggatagattttgaagaaattggtatagtagtagactagtagatagctataaatattaaaatactctagcttaagtctcaaacttgatctatggatacc |
28933220 |
T |
|
| Q |
643 |
tgatg |
647 |
Q |
| |
|
||||| |
|
|
| T |
28933221 |
tgatg |
28933225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 146 - 337
Target Start/End: Original strand, 28889975 - 28890166
Alignment:
| Q |
146 |
tgctcatcattgcttctcccatgtgaattaaatcgcatcccgtgtgacccttctccttttcccaccagttaaatggccccttctctatgccattgacaca |
245 |
Q |
| |
|
||||| |||||| ||||||| ||||| ||| || | ||| | |||||| ||| ||||||||||||| ||| ||| |||||||||||||| ||||||| | |
|
|
| T |
28889975 |
tgctcctcattgtttctcccctgtgatttacattgtatctcatgtgactctt-tccttttcccaccggttcaatcgccccttctctatgatattgacata |
28890073 |
T |
|
| Q |
246 |
tatt-agcttcaatcacataacattacttattaagaaatgttacattaggcgtgaaatgaaaagacaggccctaataaccatgtggagatata |
337 |
Q |
| |
|
|||| | | |||||||||| ||||||| ||||| ||||||| |||||||||| |||||||| ||||| ||||||||||| ||| ||||||| |
|
|
| T |
28890074 |
tatttaacatcaatcacatgacattacacattaatgaatgttatattaggcgtggaatgaaaatacaggtcctaataaccacgtgaagatata |
28890166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 599 - 647
Target Start/End: Original strand, 28924286 - 28924334
Alignment:
| Q |
599 |
ttaatatcctctagcttaagtctcaaacttgatctatggatacctgatg |
647 |
Q |
| |
|
||||||| ||| ||||||| |||||| |||||| ||||||||||||||| |
|
|
| T |
28924286 |
ttaatatgctccagcttaaatctcaatcttgatatatggatacctgatg |
28924334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 30 - 84
Target Start/End: Original strand, 29403853 - 29403908
Alignment:
| Q |
30 |
cttccctcactttaataactgaaactctt-atagattccaataaatgttgcaacta |
84 |
Q |
| |
|
|||||||| |||||||||||||||||||| ||||||||||||||| ||||||||| |
|
|
| T |
29403853 |
cttccctctctttaataactgaaactcttcctagattccaataaatattgcaacta |
29403908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 18 - 79
Target Start/End: Complemental strand, 20039488 - 20039426
Alignment:
| Q |
18 |
taaccatctagtcttccctcactttaataactgaaactctt-atagattccaataaatgttgc |
79 |
Q |
| |
|
||||| ||||| ||||| || ||| |||||||||||||||| |||||||||||||||||||| |
|
|
| T |
20039488 |
taaccctctaggcttccttctcttgaataactgaaactcttcctagattccaataaatgttgc |
20039426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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