View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2247_high_6 (Length: 449)
Name: NF2247_high_6
Description: NF2247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2247_high_6 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 1 - 449
Target Start/End: Complemental strand, 2122566 - 2122122
Alignment:
| Q |
1 |
tcgaaaataggtttggaaatgtacctgcatttttccttccnnnnnnnnnncatgtacctgcattttcattttgtacaagatcgatcgtcaccacacagta |
100 |
Q |
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| T |
2122566 |
tcgaaaataggtttggaaatgtacctgcatttttccttccaaaaaaaaa-catgtacctgcattttcattttgtacaagatcgatggtcaccacaca--- |
2122471 |
T |
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| Q |
101 |
cacgagtgaccactttttccaaggttccataattccattgtacttatttgtaaagctgaattctgtggtctgaaactgatttgttcaccttctacgaaaa |
200 |
Q |
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| T |
2122470 |
--cgagtgaccactttttccaaggttccataattccattgtacttatttgtaaagctgaattatgtggtctgaaactgatttgttcaccttctaagaaaa |
2122373 |
T |
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| Q |
201 |
ggacacac-accatgcccatttattttttacgtgacccacaacggtgatccgtgctagtgtatcaaaaatatcccagctctcaaatatttccagtttagt |
299 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2122372 |
ggacacaccaccatgcccatttattttttacgtgacccacaacggtgatccgtgctagtgtatcaaaaatatcccagctctcaaatatttccagtttagt |
2122273 |
T |
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| Q |
300 |
ttaagaacataaaaattt-catataaaggccattaaactatacggttaatcttgatatatgtatatacttgttttctaattatatgtatcaacaaaaaat |
398 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2122272 |
ttaagaacataaaaattttcatataaaggccattaaactatacggttaatcttgatatatgtatatacttgttttctaattatatgtatcaacaaaaaat |
2122173 |
T |
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| Q |
399 |
ggtagtgatttctcaaccaaccaaaaacaaaggaaaaagaacgtatgaatt |
449 |
Q |
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| T |
2122172 |
ggtagtgatttctcaaccaaccaaaaacaaaggaaaaagaacgtatgaatt |
2122122 |
T |
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