View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2247_low_1 (Length: 1085)
Name: NF2247_low_1
Description: NF2247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2247_low_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 529; Significance: 0; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 529; E-Value: 0
Query Start/End: Original strand, 246 - 810
Target Start/End: Original strand, 50558354 - 50558918
Alignment:
| Q |
246 |
atagactacaatgaaaatcgtacatacagcacagaaacatagagcaaaaatttagggagagggttgctaccttgcacctaggattcttcaactctgtagg |
345 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50558354 |
atagactacaatgaaaatcgtacatacagcacagaaacatagagcaaaaatttagggagagggttgctaccttgcacctaggattcttcaactctgtagg |
50558453 |
T |
|
| Q |
346 |
attgagaagctttccacacttatcgcattggtcacctcgtgcagaaccatactcacacccaggagttggacaggcaccttccacaagccgatcacacaag |
445 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
50558454 |
attgagaagctttccacacttatcgcattggtcacctcgtgcagaaccatactcacactcaggagttggacaggtaccttccacaagccgatcacacaag |
50558553 |
T |
|
| Q |
446 |
aacctctcgcatgtattgcagtaaagctgaaatttgataagcattttagtaaagcgtaataaagaacctttctgaaattttcaactaaacaagagagagg |
545 |
Q |
| |
|
||||||||||| |||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50558554 |
aacctctcgcaggtatcgcagtaaagctgaaatttgataagcattttagtaaagtgtaataaagaacctttctgaaattttcaactaaacaagagagagg |
50558653 |
T |
|
| Q |
546 |
aacaatgtcaaataaatagaaaattgaacacctgctccattgttctctcggagatacatttgttatcaaatatcttttggaaaattgactggcaaatttc |
645 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50558654 |
aacaatgtcaaataaatagaaaattgaacacctgctccattgttctctcggagatccatttgttatcaaatatcttttggaaaattgactggcaaatttc |
50558753 |
T |
|
| Q |
646 |
agtttgctcaggagaagaggttcgcccaaatttatcaaaacttatatcaaaccaatcatagacctccttatgaatagcatggtatctacacaaaaacacc |
745 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
50558754 |
agtttgctcaggagaagaggttcgcccaaatttatcaaaacttatatcaaaccaatcgtagacctccttatgaatagcatggtatctacacaaaaaaacc |
50558853 |
T |
|
| Q |
746 |
gagaaaagacgattattgaaattctgctttaggagtaagcaagatgagtggaaaaccattgaatc |
810 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
50558854 |
gagaaaagacgattattgaaattctgctttaggagtaagcaagatgagtgtaaaaccattgaatc |
50558918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 210; E-Value: 1e-114
Query Start/End: Original strand, 841 - 1066
Target Start/End: Original strand, 50558949 - 50559174
Alignment:
| Q |
841 |
ttgatagtacttgtcagcaatttgtttaggagaacaattctgttccaaagctctagtaataattggagtaccatactcatcagtaccacaaatgtagaga |
940 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50558949 |
ttgatagtacttgtcagcaatttgtttaggagaacaattctgttccaaagctctagtaacaattggagtaccatactcatcagtaccacaaatgtagaga |
50559048 |
T |
|
| Q |
941 |
acattgtaacccctaagtcgacagtaacgagcataaacgtcggcactcaatacacctgttcaaaatcagaatcggaaccaacaaattgtttaaatagaat |
1040 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50559049 |
acattgtaacccctaagtcgacagtaacgagcataaacgtcggcactcaacacacctgttcaaaatcagaatcggaaccaacaaattgtttaaatagaat |
50559148 |
T |
|
| Q |
1041 |
caaacgaaacgaattgtgattgaatt |
1066 |
Q |
| |
|
||||||| |||||||| ||||||||| |
|
|
| T |
50559149 |
caaacgagacgaattgcgattgaatt |
50559174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 171; E-Value: 3e-91
Query Start/End: Original strand, 14 - 188
Target Start/End: Original strand, 50558122 - 50558296
Alignment:
| Q |
14 |
cacagacatctcgttgacatatttttccaatttatctttgaacagaggaagctcaagaaataagtggtctgtatcacgaagacgaggacttttttcacaa |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50558122 |
cacagacatctcgttgacatatttttccaatttatctttgaacagaggaagctcaagaaataagtggtctgtatcacgaagacgaggacttttttcacaa |
50558221 |
T |
|
| Q |
114 |
acctgttacagtggtcaaaaaatgacaaatgcataaacatgtgtgcttaaaaaattgtgatttaaacacagtatc |
188 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50558222 |
acctgttacagtggtcaaaaaacgacaaatgcataaacatgtgtgcttaaaaaattgtgatttaaacacagtatc |
50558296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 18 - 124
Target Start/End: Original strand, 50568275 - 50568381
Alignment:
| Q |
18 |
gacatctcgttgacatatttttccaatttatctttgaacagaggaagctcaagaaataagtggtctgtatcacgaagacgaggacttttttcacaaacct |
117 |
Q |
| |
|
||||||| ||||| ||||| |||||||||||||| || | |||||||||||||||||||||||||||||||| |||| |||||| |||| |||||||| |
|
|
| T |
50568275 |
gacatcttgttgatgtatttctccaatttatctttcaatacaggaagctcaagaaataagtggtctgtatcaccaagaaaaggactgtttttacaaacct |
50568374 |
T |
|
| Q |
118 |
gttacag |
124 |
Q |
| |
|
||||||| |
|
|
| T |
50568375 |
gttacag |
50568381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 14 - 123
Target Start/End: Original strand, 29770439 - 29770548
Alignment:
| Q |
14 |
cacagacatctcgttgacatatttttccaatttatctttgaacagaggaagctcaagaaataagtggtctgtatcacgaagacgaggacttttttcacaa |
113 |
Q |
| |
|
|||||||||||| |||| ||||||| ||| ||||||| || ||||| |||||||||||||||||||| ||||||| || ||||||||| ||| |||| |
|
|
| T |
29770439 |
cacagacatctcattgatgtatttttgcaacttatcttccaaaagagggagctcaagaaataagtggtccgtatcacaaatacgaggactatttcgacaa |
29770538 |
T |
|
| Q |
114 |
acctgttaca |
123 |
Q |
| |
|
|||||||||| |
|
|
| T |
29770539 |
acctgttaca |
29770548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 620 - 733
Target Start/End: Original strand, 29773425 - 29773538
Alignment:
| Q |
620 |
ttttggaaaattgactggcaaatttcagtttgctcaggagaagaggttcgcccaaatttatcaaaacttatatcaaaccaatcatagacctccttatgaa |
719 |
Q |
| |
|
|||| |||||||| ||||| | ||||||||||||||| ||||| || || ||||||| |||||| ||||||| |||||||| ||||| ||||| |||| |
|
|
| T |
29773425 |
tttttgaaaattgcttggcacacttcagtttgctcaggggaagaagtacgtccaaattcatcaaagcttatattgaaccaatcgtagacttccttgtgaa |
29773524 |
T |
|
| Q |
720 |
tagcatggtatcta |
733 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
29773525 |
tagcatggtatcta |
29773538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 312 - 480
Target Start/End: Original strand, 29773068 - 29773236
Alignment:
| Q |
312 |
ctaccttgcacctaggattcttcaactctgtaggattgagaagctttccacacttatcgcattggtcacctcgtgcagaaccatactcacacccaggagt |
411 |
Q |
| |
|
||||||||||| | ||| ||||||| ||||| ||||| ||||| || ||||| || || || || || |||| |||||| ||||||||||||| ||| | |
|
|
| T |
29773068 |
ctaccttgcacttgggaatcttcaattctgtcggatttagaaggttgccacagttctcacactgatcccctctggcagaatcatactcacaccctggaat |
29773167 |
T |
|
| Q |
412 |
tggacaggcaccttccacaagccgatcacacaagaacctctcgcatgtattgcagtaaagctgaaattt |
480 |
Q |
| |
|
||| |||| ||| |||||||| ||||| |||||||| | |||||||| |||||||||||||||||| |
|
|
| T |
29773168 |
tgggcaggtaccctccacaagtcgatcggctaagaaccttttgcatgtatcgcagtaaagctgaaattt |
29773236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 848 - 998
Target Start/End: Original strand, 29774648 - 29774798
Alignment:
| Q |
848 |
tacttgtcagcaatttgtttaggagaacaattctgttccaaagctctagtaataattggagtaccatactcatcagtaccacaaatgtagagaacattgt |
947 |
Q |
| |
|
||||||||| ||| | ||| ||||||||||||| |||||| ||| |||| ||| ||| ||||||||||| |||||||| ||||| | |||||| |
|
|
| T |
29774648 |
tacttgtcacaaatctctttgggagaacaattctcttccaatgctttagtctccgttgcagtcccatactcatcggtaccacagatgtaaatcgcattgt |
29774747 |
T |
|
| Q |
948 |
aacccctaagtcgacagtaacgagcataaacgtcggcactcaatacacctg |
998 |
Q |
| |
|
|||||||||| |||||||| |||||| | || || |||||||| ||||||| |
|
|
| T |
29774748 |
aacccctaagacgacagtatcgagcaaacacatcagcactcaacacacctg |
29774798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 570 - 655
Target Start/End: Original strand, 50568978 - 50569065
Alignment:
| Q |
570 |
tgaacacctgctccattgttctctcggagatacatttgttatcaaa--tatcttttggaaaattgactggcaaatttcagtttgctca |
655 |
Q |
| |
|
||||||||||||||| ||||||||||| | |||||||||||||| |||||||| ||||||| || ||||| ||||||| ||||| |
|
|
| T |
50568978 |
tgaacacctgctccacggttctctcggatagccatttgttatcaaatttatctttttgaaaatttccttgcaaacttcagttagctca |
50569065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 707 - 740
Target Start/End: Original strand, 50569071 - 50569104
Alignment:
| Q |
707 |
acctccttatgaatagcatggtatctacacaaaa |
740 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| |
|
|
| T |
50569071 |
acctccttattaatagcatggtatctacacaaaa |
50569104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University