View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2247_low_11 (Length: 317)
Name: NF2247_low_11
Description: NF2247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2247_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 291; Significance: 1e-163; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 295
Target Start/End: Original strand, 11538924 - 11539218
Alignment:
| Q |
1 |
aagacacgttcgattgataatgatttgagaaaatgaattaattgaaaataattagatatgttgcattggtactgtcattgagatggatcggacaccagaa |
100 |
Q |
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| T |
11538924 |
aagacacgttcgattgataatgatttgagaaaatgaattaattgaaaataattagatatgttgcattggtactgtcattgagatggatcggacaccagaa |
11539023 |
T |
|
| Q |
101 |
ccggacacatttatatttatctgtaatctattttatgtttgatatatcttgaatcattgaaaatcgatggggaattttagagaaaaacaaaatctgactt |
200 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11539024 |
ccggacacatttctatttatctgtaatctattttatgtttgatatatcttgaatcattgaaaatcgatggggaattttagagaaaaacaaaatctgactt |
11539123 |
T |
|
| Q |
201 |
tttgcattcttaagtcctaacaattacttttatatgaggggaactttttgtataagtaactgatgaactttaactgcttaaactaactcacctga |
295 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11539124 |
tttgcattcttaagtcctaacaattacttttatatgaggggaactttttgtataagtaactgatgaactttaactgcttaaactaactcacctga |
11539218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 295
Target Start/End: Original strand, 34598343 - 34598372
Alignment:
| Q |
266 |
aactttaactgcttaaactaactcacctga |
295 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
34598343 |
aactttaactgcttaaactaactcacctga |
34598372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 295
Target Start/End: Original strand, 34625460 - 34625489
Alignment:
| Q |
266 |
aactttaactgcttaaactaactcacctga |
295 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
34625460 |
aactttaactgcttaaactaactcacctga |
34625489 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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