View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2247_low_12 (Length: 280)
Name: NF2247_low_12
Description: NF2247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2247_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 8 - 265
Target Start/End: Complemental strand, 28151589 - 28151329
Alignment:
| Q |
8 |
aaatttgtttcatattgattgctatgttaaatgatgtaaatatacttttacataaggtaacaaatataaaaactcattagaaatgatgtttgttatcaat |
107 |
Q |
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| T |
28151589 |
aaatttttttcatattgattgctatgttaaatgatgtaaatatacttttacataaggtaacaaatataaaaacttattagaaatgatgttttttatcaat |
28151490 |
T |
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| Q |
108 |
taattattccaactatataaaaacttggtatgagatagggatggcaattag---accctttcgttgtttgttcatttttacggctgattctacaatgagg |
204 |
Q |
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| T |
28151489 |
taattattccaactatataaaaacttggtatgagatagggatgacaattggagtaccctttcattgtttgttcatttttacggctgattctacaatgagg |
28151390 |
T |
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| Q |
205 |
ttgattcaagttgtcccaagacggtgatctaattctaccaagaaaataaagacatagaagt |
265 |
Q |
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| T |
28151389 |
ttgattcaagttgtcccaagacggtgatctaattctaccaacaaaatcaagacatataagt |
28151329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 133
Target Start/End: Complemental strand, 28147543 - 28147415
Alignment:
| Q |
15 |
tttcatattgattgctatgttaaatgatgtaaa-tatacttttacataaggtaa--------caaatataaaaactcattagaaatgatgtttgttatca |
105 |
Q |
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| T |
28147543 |
tttcatattgatcgctattttaaatgacataaaatgtacttttacataaggttataattcagcaaatataaaaacttattagaaatgatgttttttaacg |
28147444 |
T |
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| Q |
106 |
attaattattccaact-atataaaaactt |
133 |
Q |
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| T |
28147443 |
aataataattccaactaatataaaaactt |
28147415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 169 - 265
Target Start/End: Original strand, 17538595 - 17538690
Alignment:
| Q |
169 |
tgtttgttcatttttacggctgattctacaatgaggttgattcaagttgtcccaagacggtgatctaattctaccaagaaaataaagacatagaagt |
265 |
Q |
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| T |
17538595 |
tgtttgttcatctttttggctaattctacaatgaggttgattcaagttgtcccaagacggtgatctaattcta-caacaaaatcaagacatataagt |
17538690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 169 - 242
Target Start/End: Original strand, 17539642 - 17539715
Alignment:
| Q |
169 |
tgtttgttcatttttacggctgattctacaatgaggttgattcaagttgtcccaagacggtgatctaattctac |
242 |
Q |
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| T |
17539642 |
tgtttgttcatctttttggctaattctacaatgaggggtattcaagttgtcccaagatggtgatttaattctac |
17539715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 191 - 242
Target Start/End: Complemental strand, 13274465 - 13274414
Alignment:
| Q |
191 |
attctacaatgaggttgattcaagttgtcccaagacggtgatctaattctac |
242 |
Q |
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| T |
13274465 |
attctacggtgagtttgattcaagttgttccaagacggtgatctaattctac |
13274414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 189 - 242
Target Start/End: Original strand, 26362687 - 26362740
Alignment:
| Q |
189 |
tgattctacaatgaggttgattcaagttgtcccaagacggtgatctaattctac |
242 |
Q |
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| T |
26362687 |
tgattctacattgagtttgattcaagttgtctcaagacagtgatataattctac |
26362740 |
T |
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