View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2247_low_13 (Length: 239)
Name: NF2247_low_13
Description: NF2247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2247_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 221; Significance: 1e-122; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 32710081 - 32709861
Alignment:
| Q |
1 |
tatcagtacagtaattataaatggtaaatttcttacgaacccactttatccttttccattgagcagcatcaaggtcacgaaattcaggtcgattccacca |
100 |
Q |
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| T |
32710081 |
tatcagtacagtaattataaatggtaaatttcttacgaacccactttatccttttccattgagcagcatcaaggtcacgaaattcaggtcgattccacca |
32709982 |
T |
|
| Q |
101 |
ttttctaccttgttttgcacagtactttgcattaactgaggtttcacaaccatcaatgtgaaaacttttgtaacctgctatgaatggtgctttggaccaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32709981 |
ttttctaccttgttttgcacagtactttgcattaactgaggtttcacaaccatcaatgtgaaaacttttgtaacctgctatgaatggtgctttggaccaa |
32709882 |
T |
|
| Q |
201 |
tctgttttctctaatccacct |
221 |
Q |
| |
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||||||||||||||||||||| |
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| T |
32709881 |
tctgttttctctaatccacct |
32709861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 56 - 220
Target Start/End: Complemental strand, 32718626 - 32718462
Alignment:
| Q |
56 |
ccattgagcagcatcaaggtcacgaaattcaggtcgattccaccattttctaccttgttttgcacagtactttgcattaactgaggtttcacaaccatca |
155 |
Q |
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|||||||||||||||||| ||||||||||||||| ||| ||||||| || |||||||| ||||||| ||||||||||||| || | ||||||||||||| |
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| T |
32718626 |
ccattgagcagcatcaagatcacgaaattcaggttgatcccaccatcttttaccttgtgttgcacaaaactttgcattaacagatgattcacaaccatca |
32718527 |
T |
|
| Q |
156 |
atgtgaaaacttttgtaacctgctatgaatggtgctttggaccaatctgttttctctaatccacc |
220 |
Q |
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| T |
32718526 |
atgtggaaacttttgtaacctgctatgaatggtgcttttgaccaatcagttttttctaatccacc |
32718462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 56 - 221
Target Start/End: Complemental strand, 32715248 - 32715083
Alignment:
| Q |
56 |
ccattgagcagcatcaaggtcacgaaattcaggtcgattccaccattttctaccttgttttgcacagtactttgcattaactgaggtttcacaaccatca |
155 |
Q |
| |
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|||||||||||||||||| ||||||||||||||| ||| ||||||| || |||||||| ||||||| ||||||||||||| || | ||||||||||||| |
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| T |
32715248 |
ccattgagcagcatcaagatcacgaaattcaggttgatcccaccatcttttaccttgtgttgcacaaaactttgcattaacagatgattcacaaccatca |
32715149 |
T |
|
| Q |
156 |
atgtgaaaacttttgtaacctgctatgaatggtgctttggaccaatctgttttctctaatccacct |
221 |
Q |
| |
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||||| || | |||||| |||||||||||||||||||| ||||||||||||||||| || |||||| |
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| T |
32715148 |
atgtggaagcctttgtagcctgctatgaatggtgcttttgaccaatctgttttctccaaaccacct |
32715083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 50 - 220
Target Start/End: Original strand, 10379629 - 10379799
Alignment:
| Q |
50 |
ccttttccattgagcagcatcaaggtcacgaaattcaggtcgattccaccattttctaccttgttttgcacagtactttgcattaactgaggtttcacaa |
149 |
Q |
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||||| |||||||||| ||||||||||| ||||||||||| ||| ||||||| || | |||||| | |||| | |||||||| || || | |||||| |
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| T |
10379629 |
cctttgccattgagcaacatcaaggtcatgaaattcaggttgatcccaccatctttttccttgtgtgtcacaaaattttgcattcacagaagcttcacac |
10379728 |
T |
|
| Q |
150 |
ccatcaatgtgaaaacttttgtaacctgctatgaatggtgctttggaccaatctgttttctctaatccacc |
220 |
Q |
| |
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|||||||| || || | ||||||| |||||||| ||||||||||||||||||||||||||||| ||||| |
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| T |
10379729 |
ccatcaatatggaaccctttgtaagaggctatgaagggtgctttggaccaatctgttttctctaaaccacc |
10379799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 51 - 220
Target Start/End: Complemental strand, 10411600 - 10411431
Alignment:
| Q |
51 |
cttttccattgagcagcatcaaggtcacgaaattcaggtcgattccaccattttctaccttgttttgcacagtactttgcattaactgaggtttcacaac |
150 |
Q |
| |
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|||| |||||||||| ||||||| ||| |||| |||||| ||| ||||||| || | |||||| | |||| | |||||||| || || | |||||||| |
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| T |
10411600 |
ctttgccattgagcaacatcaagatcatgaaactcaggttgatcccaccatctttttccttgtgtgtcacaaaattttgcattcacagaagcttcacaac |
10411501 |
T |
|
| Q |
151 |
catcaatgtgaaaacttttgtaacctgctatgaatggtgctttggaccaatctgttttctctaatccacc |
220 |
Q |
| |
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|||| || ||||| | |||||| |||||||| |||||||||||||||||||||||||| || ||||| |
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| T |
10411500 |
catcgatatgaaaccctttgtatgaggctatgaagggtgctttggaccaatctgttttctccaaaccacc |
10411431 |
T |
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