View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2247_low_2 (Length: 731)

Name: NF2247_low_2
Description: NF2247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2247_low_2
NF2247_low_2
[»] chr8 (19 HSPs)
chr8 (175-714)||(14191302-14191858)
chr8 (338-714)||(14182542-14182918)
chr8 (326-711)||(40717289-40717674)
chr8 (1-171)||(23402090-23402260)
chr8 (4-167)||(4403994-4404157)
chr8 (307-678)||(14200462-14200836)
chr8 (4-166)||(34136843-34137005)
chr8 (1-173)||(16788040-16788212)
chr8 (1-171)||(36408533-36408703)
chr8 (1-131)||(9877242-9877372)
chr8 (1-171)||(29728401-29728571)
chr8 (1-171)||(3648809-3648979)
chr8 (1-171)||(2729211-2729381)
chr8 (1-175)||(15838264-15838437)
chr8 (1-152)||(39914516-39914666)
chr8 (27-137)||(3435285-3435397)
chr8 (1-121)||(42230971-42231089)
chr8 (60-130)||(40470567-40470637)
chr8 (19-79)||(376458-376519)
[»] chr5 (25 HSPs)
chr5 (329-714)||(34645588-34645973)
chr5 (329-714)||(34665282-34665667)
chr5 (1-171)||(17332566-17332736)
chr5 (315-711)||(19649575-19649971)
chr5 (1-171)||(12278875-12279045)
chr5 (1-171)||(31680349-31680519)
chr5 (5-170)||(37254624-37254789)
chr5 (1-171)||(31501731-31501901)
chr5 (1-139)||(33430335-33430473)
chr5 (1-171)||(10033909-10034079)
chr5 (1-171)||(13817959-13818129)
chr5 (1-153)||(39657521-39657673)
chr5 (1-170)||(36293636-36293805)
chr5 (1-131)||(16155019-16155149)
chr5 (1-170)||(39434679-39434848)
chr5 (1-151)||(1776391-1776541)
chr5 (1-123)||(16333891-16334013)
chr5 (1-170)||(26283333-26283502)
chr5 (1-171)||(36291353-36291523)
chr5 (1-131)||(43068899-43069029)
chr5 (1-174)||(19985918-19986091)
chr5 (2-153)||(3155647-3155798)
chr5 (27-140)||(28801300-28801415)
chr5 (68-173)||(202619-202724)
chr5 (123-171)||(26543902-26543950)
[»] chr4 (42 HSPs)
chr4 (4-170)||(43143602-43143768)
chr4 (1-171)||(3292911-3293081)
chr4 (1-171)||(6690250-6690420)
chr4 (1-171)||(30216757-30216927)
chr4 (1-171)||(50205092-50205262)
chr4 (4-167)||(42333794-42333957)
chr4 (4-171)||(10352902-10353069)
chr4 (453-714)||(45644907-45645169)
chr4 (348-649)||(1389888-1390191)
chr4 (1-170)||(20129293-20129462)
chr4 (1-170)||(48989311-48989480)
chr4 (1-136)||(44156668-44156803)
chr4 (1-170)||(25930691-25930860)
chr4 (1-170)||(26439294-26439463)
chr4 (1-170)||(34407299-34407468)
chr4 (1-176)||(28877265-28877440)
chr4 (1-129)||(35545977-35546105)
chr4 (1-150)||(29319720-29319869)
chr4 (1-170)||(29995998-29996167)
chr4 (1-170)||(43355887-43356056)
chr4 (5-171)||(17511252-17511418)
chr4 (1-171)||(26448035-26448204)
chr4 (1-170)||(13012171-13012340)
chr4 (2-171)||(30077647-30077815)
chr4 (1-170)||(47500756-47500925)
chr4 (1-153)||(36382361-36382512)
chr4 (27-164)||(30109945-30110084)
chr4 (1-115)||(1817755-1817869)
chr4 (1-171)||(13392896-13393055)
chr4 (1-171)||(13396035-13396194)
chr4 (27-141)||(48129978-48130087)
chr4 (1-98)||(6235575-6235672)
chr4 (1-129)||(40529039-40529167)
chr4 (68-171)||(27363343-27363446)
chr4 (112-170)||(7769311-7769369)
chr4 (117-171)||(49908783-49908837)
chr4 (60-128)||(6254569-6254637)
chr4 (116-172)||(17554977-17555033)
chr4 (116-171)||(6212028-6212083)
chr4 (117-171)||(5517495-5517549)
chr4 (53-170)||(45194159-45194276)
chr4 (373-423)||(45644853-45644903)
[»] chr3 (18 HSPs)
chr3 (4-170)||(11018230-11018396)
chr3 (1-170)||(45182964-45183133)
chr3 (1-171)||(6930909-6931079)
chr3 (1-171)||(33040935-33041105)
chr3 (4-170)||(6503587-6503753)
chr3 (2-171)||(19565517-19565686)
chr3 (1-166)||(27935165-27935330)
chr3 (1-170)||(39771773-39771942)
chr3 (2-171)||(45335857-45336025)
chr3 (1-152)||(6269441-6269592)
chr3 (1-153)||(19390146-19390298)
chr3 (1-152)||(22968459-22968610)
chr3 (1-153)||(34084137-34084289)
chr3 (1-170)||(35514249-35514414)
chr3 (1-140)||(40081756-40081893)
chr3 (27-134)||(5135288-5135397)
chr3 (117-171)||(6890980-6891034)
chr3 (123-173)||(5354689-5354739)
[»] chr2 (27 HSPs)
chr2 (1-171)||(8147333-8147504)
chr2 (1-171)||(45418565-45418735)
chr2 (1-171)||(44084618-44084788)
chr2 (5-171)||(770976-771147)
chr2 (4-170)||(8059351-8059517)
chr2 (1-150)||(41251649-41251798)
chr2 (1-170)||(42439969-42440138)
chr2 (1-153)||(31581637-31581789)
chr2 (1-128)||(12756852-12756979)
chr2 (1-170)||(35962698-35962867)
chr2 (1-170)||(17445056-17445223)
chr2 (1-170)||(6403819-6403988)
chr2 (1-153)||(32127156-32127308)
chr2 (16-170)||(2958131-2958284)
chr2 (1-150)||(16405603-16405752)
chr2 (3-147)||(18981622-18981766)
chr2 (1-133)||(2285882-2286014)
chr2 (39-155)||(26237955-26238071)
chr2 (20-100)||(26162733-26162813)
chr2 (27-129)||(4555250-4555354)
chr2 (551-711)||(28402637-28402797)
chr2 (551-711)||(45396688-45396848)
chr2 (572-710)||(44491543-44491681)
chr2 (27-141)||(7072589-7072707)
chr2 (354-416)||(44491758-44491820)
chr2 (123-171)||(34523222-34523270)
chr2 (74-131)||(34905971-34906028)
[»] chr7 (20 HSPs)
chr7 (5-170)||(34389075-34389240)
chr7 (1-171)||(8867746-8867916)
chr7 (1-171)||(26624727-26624898)
chr7 (1-171)||(37002159-37002329)
chr7 (1-141)||(35090180-35090320)
chr7 (1-171)||(43184483-43184653)
chr7 (1-171)||(33685546-33685716)
chr7 (1-150)||(3114111-3114260)
chr7 (1-170)||(5555470-5555639)
chr7 (1-130)||(38638251-38638380)
chr7 (1-129)||(36658205-36658333)
chr7 (1-171)||(7002707-7002877)
chr7 (1-171)||(7048578-7048748)
chr7 (1-153)||(36630816-36630968)
chr7 (1-152)||(14777122-14777273)
chr7 (1-131)||(40920018-40920148)
chr7 (1-153)||(8394125-8394277)
chr7 (27-94)||(10868514-10868583)
chr7 (63-166)||(26502797-26502899)
chr7 (63-166)||(26589815-26589917)
[»] chr6 (14 HSPs)
chr6 (1-171)||(28996712-28996882)
chr6 (311-714)||(34302228-34302631)
chr6 (1-153)||(18339106-18339258)
chr6 (2-171)||(29743265-29743434)
chr6 (1-170)||(34948773-34948942)
chr6 (1-170)||(398600-398769)
chr6 (1-170)||(13837804-13837973)
chr6 (1-137)||(33229351-33229487)
chr6 (68-169)||(24697899-24698000)
chr6 (57-167)||(31028435-31028545)
chr6 (116-171)||(13646999-13647054)
chr6 (116-171)||(34385518-34385573)
chr6 (68-169)||(24695472-24695572)
chr6 (629-711)||(33889723-33889805)
[»] chr1 (13 HSPs)
chr1 (5-170)||(35907535-35907700)
chr1 (5-171)||(17445295-17445461)
chr1 (1-170)||(3828967-3829135)
chr1 (1-153)||(32982071-32982223)
chr1 (5-170)||(321396-321561)
chr1 (10-171)||(42310965-42311126)
chr1 (1-170)||(26144238-26144407)
chr1 (1-170)||(7433428-7433597)
chr1 (27-171)||(41972314-41972459)
chr1 (27-171)||(33489669-33489815)
chr1 (116-171)||(44352613-44352668)
chr1 (117-171)||(31866959-31867013)
chr1 (47-170)||(23313221-23313345)
[»] scaffold0154 (1 HSPs)
scaffold0154 (1-171)||(31462-31632)
[»] scaffold0502 (1 HSPs)
scaffold0502 (1-153)||(5230-5382)
[»] scaffold0041 (1 HSPs)
scaffold0041 (1-131)||(52947-53077)
[»] scaffold0069 (1 HSPs)
scaffold0069 (1-170)||(17825-17994)
[»] scaffold0002 (1 HSPs)
scaffold0002 (1-170)||(480472-480641)
[»] scaffold2142 (1 HSPs)
scaffold2142 (1-170)||(505-674)
[»] scaffold0769 (1 HSPs)
scaffold0769 (123-172)||(1258-1307)


Alignment Details
Target: chr8 (Bit Score: 447; Significance: 0; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 175 - 714
Target Start/End: Original strand, 14191302 - 14191858
Alignment:
Q  175 caattcctctgtatgcgataatgcgtctatctacttaatttt--catttccttcggatagtctataaaaaggcaccgaaaaacataaacattgtaacaaa 272  Q
    ||||||||||||||||||||||||||||||||||||||||||  ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |    
T  14191302 caattcctctgtatgcgataatgcgtctatctacttaattttttcatttccttcgaatagtctataaaaaggcaccgaaaaacataaacattgtaacaca 14191401  T
Q  273 attttcata--atcattac-------------gcaacaatgggtaaacgttcatttcttacccttctattcttttccatctgtttcattgtttctttttc 357  Q
    |||||||||  || ||| |             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14191402 attttcatatcattatttctctatacattatggcaacaatgggtaaacgttcatttcttacccttctattcttttccatctgtttcattgtttctttttc 14191501  T
Q  358 tcatgctcaaaagaatggttttagtgttgaactcatccaccgcgactctttaaaatcaccactctataaacctactcaaaacaaataccaattgtttgtc 457  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||  ||||||    
T  14191502 tcatgctcaaaagaatggttttagtgttgaactcatccaccgcgactctttaaaatcaccactctataaacctactcaaaataaataccaatattttgtc 14191601  T
Q  458 aatgccgcacgtcgttccatcaaccgtgccaatcatttttacaaatattcccttgcaaatatacctcaatcaactgtaattcccgatatcggcgagtatc 557  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  14191602 gatgccgcacgtcgttccatcaaccgtgccaatcatttttacaaatattcccttgcaaatatacctcaatcaactgtaatccccgatatcggcgagtatc 14191701  T
Q  558 tcatgacctattcagttggtaccccaccatttaagttatatggtattgttgataccggtagtgatattgtttggcttcaatgtgagccttgtcaagaatg 657  Q
    | |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14191702 taatgacctattcagttggtacaccaccatttaagttatatggtattgttgataccggtagtgatattgtttggcttcaatgtgagccttgtcaagaatg 14191801  T
Q  658 ttacaaccaaaccactcctatgtttaatccgtcgaaatcgtcaagttacaaaaacat 714  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14191802 ttacaaccaaaccactcctatgtttaatccgtcgaaatcgtcaagttacaaaaacat 14191858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 205; E-Value: 1e-111
Query Start/End: Original strand, 338 - 714
Target Start/End: Original strand, 14182542 - 14182918
Alignment:
Q  338 tgtttcattgtttctttttctcatgctcaaaagaatggttttagtgttgaactcatccaccgcgactctttaaaatcaccactctataaacctactcaaa 437  Q
    ||||||||| ||||| |||||||||||| ||| ||||||||||||||||||||||||||||||||||| | |||||||||||| ||  ||||||| ||||    
T  14182542 tgtttcattatttctctttctcatgctctaaacaatggttttagtgttgaactcatccaccgcgactcctcaaaatcaccactataccaacctacacaaa 14182641  T
Q  438 acaaataccaattgtttgtcaatgccgcacgtcgttccatcaaccgtgccaatcatttttacaaatattcccttgcaaatatacctcaatcaactgtaat 537  Q
    |||||||||||    |||||||||||||||| ||||| ||||| |||||||||||||| ||||||  | ||||  |||| | ||||||||||||||||||    
T  14182642 acaaataccaacatattgtcaatgccgcacgccgttctatcaatcgtgccaatcatttctacaaaactgccctcacaaacacacctcaatcaactgtaat 14182741  T
Q  538 tcccgatatcggcgagtatctcatgacctattcagttggtaccccaccatttaagttatatggtattgttgataccggtagtgatattgtttggcttcaa 637  Q
     ||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| |||||||| |||||||||||||||    
T  14182742 ccccgatcatggcgagtatctcatgacctattcagttggtaccccaccatttaagttatatggcattgctgatacaggtagtgacattgtttggcttcaa 14182841  T
Q  638 tgtgagccttgtcaagaatgttacaaccaaaccactcctatgtttaatccgtcgaaatcgtcaagttacaaaaacat 714  Q
    || ||||||||  ||||||||||||| ||||| ||||||| |||||| || || |||||||||| ||||||||||||    
T  14182842 tgcgagccttgcaaagaatgttacaatcaaacaactcctaagtttaaaccatcaaaatcgtcaacttacaaaaacat 14182918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 326 - 711
Target Start/End: Original strand, 40717289 - 40717674
Alignment:
Q  326 ttcttttccatctgtttcattgtttctttttctcatgctcaaaagaatggttttagtgttgaactcatccaccgcgactctttaaaatcaccactctata 425  Q
    ||||||||| | || ||||||| ||||||||||||||| | ||| ||||||||||| |||||||| |||||||||||||||| |||||||||| ||||      
T  40717289 ttcttttccctttgcttcattgcttctttttctcatgcgctaaacaatggttttagcgttgaacttatccaccgcgactcttcaaaatcaccattctacc 40717388  T
Q  426 aacctactcaaaacaaataccaattgtttgtcaatgccgcacgtcgttccatcaaccgtgccaatcatttttacaaatattcccttgcaaatatacctca 525  Q
    ||||||| |||||||| ||||||    |||| ||||||||||||||||| ||||||||||| |||||||| |||||| |||| ||| ||| |  |||| |    
T  40717389 aacctacacaaaacaagtaccaaaaagttgtgaatgccgcacgtcgttctatcaaccgtgctaatcatttctacaaaaattcacttacaagttcacctga 40717488  T
Q  526 atcaactgtaattcccgatatcggcgagtatctcatgacctattcagttggtaccccaccatttaagttatatggtattgttgataccggtagtgatatt 625  Q
    ||||| |||||| || ||||  || |||||||| |||||||||||| |||||| ||||||||||||||||||||| |||||||| || |||||||| |||    
T  40717489 atcaaatgtaatccctgataatggtgagtatctgatgacctattcaattggtagcccaccatttaagttatatggcattgttgacacaggtagtgacatt 40717588  T
Q  626 gtttggcttcaatgtgagccttgtcaagaatgttacaaccaaaccactcctatgtttaatccgtcgaaatcgtcaagttacaaaaa 711  Q
    |||||||||||||| ||||||||| || |||||||||||||||||||||||| |||||| || || ||||| |||| |||||||||    
T  40717589 gtttggcttcaatgcgagccttgtgaacaatgttacaaccaaaccactcctaagtttaaaccatcaaaatcatcaacttacaaaaa 40717674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 151; E-Value: 2e-79
Query Start/End: Original strand, 1 - 171
Target Start/End: Complemental strand, 23402260 - 23402090
Alignment:
Q  1 atagtgtgttaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtatgttaattggcttttgggttg 100  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  23402260 atagtgtgttaaataaaatttcgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattggcttttgggttg 23402161  T
Q  101 ggtctaatatgcaaagattatcgatcgagcctgggcgaccgtccggggtcgccggacggtgaaaccgcccc 171  Q
    ||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| |||||||||||||||    
T  23402160 ggtctaatatgcaaagattatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccgcccc 23402090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 4 - 167
Target Start/End: Complemental strand, 4404157 - 4403994
Alignment:
Q  4 gtgtgttaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtatgttaattggcttttgggttgggt 103  Q
    ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  4404157 gtgtgctaaataaaattccgagacctatttgcgtgtgagaatttttagattgcccaaatttttctttttgtaagtatgttaattggcttttgggttgagt 4404058  T
Q  104 ctaatatgcaaagattatcgatcgagcctgggcgaccgtccggggtcgccggacggtgaaaccg 167  Q
    ||||| |||||| ||||||||||||||| ||||||||| | ||||||||||| | |||||||||    
T  4404057 ctaatgtgcaaaaattatcgatcgagcccgggcgaccgcctggggtcgccggccagtgaaaccg 4403994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 307 - 678
Target Start/End: Original strand, 14200462 - 14200836
Alignment:
Q  307 ttcatttcttacccttctattcttttccatct---gtttcattgtttctttttctcatgctcaaaagaatggttttagtgttgaactcatccaccgcgac 403  Q
    |||||||||||| ||||| |||||| |||| |   |||||||| ||||  |||||||||||| ||| |||||||| | | ||||||||||||| ||||||    
T  14200462 ttcatttcttacacttcttttctttaccattttttgtttcattatttcactttctcatgctctaaacaatggtttcactcttgaactcatccatcgcgac 14200561  T
Q  404 tctttaaaatcaccactctataaacctactcaaaacaaataccaattgtttgtcaatgccgcacgtcgttccatcaaccgtgccaatcatttttacaaat 503  Q
    |||| |||||||||| ||||  ||||||| |||||||||||| ||    ||| |||||| |  ||||||||||||||||||| ||| ||||| |||||||    
T  14200562 tcttcaaaatcaccattctaccaacctacacaaaacaaatacgaacgcattgccaatgcggtgcgtcgttccatcaaccgtgtcaaccatttctacaaat 14200661  T
Q  504 attcccttgcaaatatacctcaatcaactgtaattcccgatatcggcgagtatctcatgacctattcagttggtaccccaccatttaagttatatggtat 603  Q
    |||| ||  | | || |||||||||||||||||   | ||||  || |||||||||||||  |||||| ||||||| |||||||||||| ||| |||  |    
T  14200662 attctctcactagtacacctcaatcaactgtaaactctgataaaggtgagtatctcatgagttattcaattggtactccaccatttaaggtatttggctt 14200761  T
Q  604 tgttgataccggtagtgatattgtttggcttcaatgtgagccttgtcaagaatgttacaaccaaaccactcctat 678  Q
    ||||||||| ||||||||  |||||||||||||||||||||||||| || ||||||||  ||||| ||| |||||    
T  14200762 tgttgatacaggtagtgaccttgtttggcttcaatgtgagccttgtaaacaatgttacccccaaatcacacctat 14200836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 4 - 166
Target Start/End: Original strand, 34136843 - 34137005
Alignment:
Q  4 gtgtgttaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtatgttaattggcttttgggttgggt 103  Q
    ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| ||    
T  34136843 gtgtgctaaataaaatttcgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattgacttttgggttgagt 34136942  T
Q  104 ctaatatgcaaagattatcgatcgagcctgggcgaccgtccggggtcgccggacggtgaaacc 166  Q
    ||||| |||||| ||||||||||||||| |||||||||  |||||||||| ||||||||||||    
T  34136943 ctaatgtgcaaaaattatcgatcgagcccgggcgaccgctcggggtcgccagacggtgaaacc 34137005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 113; E-Value: 8e-57
Query Start/End: Original strand, 1 - 173
Target Start/End: Original strand, 16788040 - 16788212
Alignment:
Q  1 atagtgtgttaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtatgttaattggcttttgggttg 100  Q
    |||||||| ||||||||||||| |||||||||||||||||||| |||| ||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  16788040 atagtgtgctaaataaaattccaagacctatttgcgtgtgagagttttaagattgcccaaatttttctttttgtaagtgtgttaattggcttttgggttg 16788139  T
Q  101 ggtctaatatgcaaagattatcgatcgagcctgggcgaccgtccggggtcgccggacggtgaaaccgcccccg 173  Q
     ||||||| |||||| ||||||||||||||| ||||||||| ||||||| ||||| |  |||||||| |||||    
T  16788140 agtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggttgccgggcaatgaaaccgtccccg 16788212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 1 - 171
Target Start/End: Complemental strand, 36408703 - 36408533
Alignment:
Q  1 atagtgtgttaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtatgttaattggcttttgggttg 100  Q
    ||||||||||||||||||||| |||||||||| |||||| |||||||||| |||||| ||| |||||||||||||| | ||||||| | |||||||||||    
T  36408703 atagtgtgttaaataaaattctgagacctattagcgtgtaagaattttcaaattgccaaaaattttctttttgtaaatgtgttaatggacttttgggttg 36408604  T
Q  101 ggtctaatatgcaaagattatcgatcgagcctgggcgaccgtccggggtcgccggacggtgaaaccgcccc 171  Q
    | |||||| |||||| ||||||||||||||| ||||||||| ||| ||||||||| |||||||||| ||||    
T  36408603 gatctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccgaggtcgccgggcggtgaaaccacccc 36408533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 9877372 - 9877242
Alignment:
Q  1 atagtgtgttaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtatgttaattggcttttgggttg 100  Q
    |||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||     
T  9877372 atagtgtgctaaataaaatttcgagacctatttgcatgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattgacttttgggtta 9877273  T
Q  101 ggtctaatatgcaaagattatcgatcgagcc 131  Q
    |||||||| |||||| |||||| ||||||||    
T  9877272 ggtctaatgtgcaaaaattatcaatcgagcc 9877242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 1 - 171
Target Start/End: Original strand, 29728401 - 29728571
Alignment:
Q  1 atagtgtgttaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtatgttaattggcttttgggttg 100  Q
    |||||||| ||||||||||||  |||||||||||||||| | |||||||||||||||||||||||||||||||||| | |||||||  ||||||||||||    
T  29728401 atagtgtgctaaataaaattcgaagacctatttgcgtgtcacaattttcagattgcccaaatttttctttttgtaaatgtgttaatgagcttttgggttg 29728500  T
Q  101 ggtctaatatgcaaagattatcgatcgagcctgggcgaccgtccggggtcgccggacggtgaaaccgcccc 171  Q
     ||||||| ||||||  |||||||||||||  |||||||||||||||||||||  |||||  |||||||||    
T  29728501 agtctaatgtgcaaaatttatcgatcgagcacgggcgaccgtccggggtcgccatacggtagaaccgcccc 29728571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 1 - 171
Target Start/End: Original strand, 3648809 - 3648979
Alignment:
Q  1 atagtgtgttaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtatgttaattggcttttgggttg 100  Q
    |||||||| ||||||||||||| | ||||| |||||||||| ||||||||||||||||||| |||||||||||||| | ||||||| |||||||||||||    
T  3648809 atagtgtgctaaataaaattccaaaacctacttgcgtgtgacaattttcagattgcccaaaattttctttttgtaaatgtgttaatgggcttttgggttg 3648908  T
Q  101 ggtctaatatgcaaagattatcgatcgagcctgggcgaccgtccggggtcgccggacggtgaaaccgcccc 171  Q
     ||||||| || ||| ||||||||||||||| ||||||| |||| || |||||  |||||  |||||||||    
T  3648909 agtctaatgtgaaaaaattatcgatcgagcccgggcgactgtcccggatcgccatacggtagaaccgcccc 3648979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 1 - 171
Target Start/End: Original strand, 2729211 - 2729381
Alignment:
Q  1 atagtgtgttaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtatgttaattggcttttgggttg 100  Q
    |||||||| |||||||||||  ||||||||||||||| ||||| |||||| |||||| |||  ||||||||| ||||| ||||||| ||||||||| |||    
T  2729211 atagtgtgctaaataaaattttgagacctatttgcgtatgagagttttcaaattgccaaaaaatttctttttataagtgtgttaatgggcttttggattg 2729310  T
Q  101 ggtctaatatgcaaagattatcgatcgagcctgggcgaccgtccggggtcgccggacggtgaaaccgcccc 171  Q
    | | |||| || ||| ||||||||||||||| ||||| ||| ||||||||||||| |||||||||||||||    
T  2729311 gatttaatgtgtaaaaattatcgatcgagcccgggcgtccgcccggggtcgccgggcggtgaaaccgcccc 2729381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 1 - 175
Target Start/End: Complemental strand, 15838437 - 15838264
Alignment:
Q  1 atagtgtgttaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtatgttaattggcttttgggttg 100  Q
    |||||||| ||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |||||||| | ||||||| | ||||| |||||    
T  15838437 atagtgtgctaaataaaattccaagacctatttgcgtgtgaaaattttcagattgcccaaatttttc-ttttgtaaatgtgttaatggactttttggttg 15838339  T
Q  101 ggtctaatatgcaaagattatcgatcgagcctgggcgaccgtccggggtcgccggacggtgaaaccgcccccgcc 175  Q
     || |||| |||||| |||||| |||||||| ||| ||||| |||||||||||  |||||  ||||||| |||||    
T  15838338 agtttaatgtgcaaaaattatcaatcgagcccgggtgaccgcccggggtcgccatacggtagaaccgccaccgcc 15838264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 1 - 152
Target Start/End: Complemental strand, 39914666 - 39914516
Alignment:
Q  1 atagtgtgttaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtatgttaattggcttttgggttg 100  Q
    ||||||||  |||||||||||| |||||||||| | ||||| |||||||| ||||||||||||||| ||||| ||| | |||||||  |||||| |||||    
T  39914666 atagtgtgccaaataaaattccaagacctatttacttgtgacaattttcaaattgcccaaattttt-tttttataaatgtgttaatgagctttttggttg 39914568  T
Q  101 ggtctaatatgcaaagattatcgatcgagcctgggcgaccgtccggggtcgc 152  Q
     ||||||| |||||| ||||||||||||||| ||||||||| ||||||||||    
T  39914567 agtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgc 39914516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 27 - 137
Target Start/End: Complemental strand, 3435397 - 3435285
Alignment:
Q  27 cctatttgcgtgtgagaattttcagatt--gcccaaatttttctttttgtaagtatgttaattggcttttgggttgggtctaatatgcaaagattatcga 124  Q
    ||||||||||| ||||||||||||||||  |||||||||||||||||||||||| ||||||| || |||||||||||||||||| |||||| ||||||||    
T  3435397 cctatttgcgtttgagaattttcagattttgcccaaatttttctttttgtaagtgtgttaatgggtttttgggttgggtctaatgtgcaaaaattatcga 3435298  T
Q  125 tcgagcctgggcg 137  Q
    || |||| |||||    
T  3435297 tcaagcccgggcg 3435285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 42231089 - 42230971
Alignment:
Q  1 atagtgtgttaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtatgttaattggcttttgggttg 100  Q
    |||||||| |||||||||||| ||||||||||||| | |||||||||||| ||||||||||||||||||||||||||  ||||||| | |||||| ||||    
T  42231089 atagtgtgctaaataaaattctgagacctatttgcatatgagaattttcaaattgcccaaatttttctttttgtaag--tgttaatggacttttgagttg 42230992  T
Q  101 ggtctaatatgcaaagattat 121  Q
    | | |||| |||||| |||||    
T  42230991 gatttaatgtgcaaaaattat 42230971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 60 - 130
Target Start/End: Original strand, 40470567 - 40470637
Alignment:
Q  60 aatttttctttttgtaagtatgttaattggcttttgggttgggtctaatatgcaaagattatcgatcgagc 130  Q
    ||||||| ||||| ||||| ||||||| | ||||||  ||||||||||| |||||| ||||||||||||||    
T  40470567 aatttttttttttataagtgtgttaatggacttttgatttgggtctaatgtgcaaaaattatcgatcgagc 40470637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 376519 - 376458
Alignment:
Q  19 ttccgagacctatttgcgtgtgagaattttcagattgccca-aatttttctttttgtaagta 79  Q
    ||||||||||| |||||||||||||||||||| ||| | || ||||||| ||||| ||||||    
T  376519 ttccgagacctctttgcgtgtgagaattttcatatttcgcacaatttttttttttttaagta 376458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 162; Significance: 4e-86; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 162; E-Value: 4e-86
Query Start/End: Original strand, 329 - 714
Target Start/End: Original strand, 34645588 - 34645973
Alignment:
Q  329 ttttccatctgtttcattgtttctttttctcatgctcaaaagaatggttttagtgttgaactcatccaccgcgactctttaaaatcaccactctataaac 428  Q
    |||||| | |||||||||| ||||||||||||||||| ||  ||||||||||||||||||||||||||||| |||||   ||||||||||  ||| ||||    
T  34645588 ttttccctttgtttcattgcttctttttctcatgctctaagcaatggttttagtgttgaactcatccaccgtgactccccaaaatcaccatactacaaac 34645687  T
Q  429 ctactcaaaacaaataccaattgtttgtcaatgccgcacgtcgttccatcaaccgtgccaatcatttttacaaatattcccttgcaaatatacctcaatc 528  Q
    ||||  |||| |||||||||   |||||| |||| ||||||||||||||||| |||||||||||||| |  ||| ||||     ||| || |||| ||||    
T  34645688 ctaccgaaaataaataccaacactttgtcgatgcagcacgtcgttccatcaatcgtgccaatcatttctttaaagattctgacacaagtacacctgaatc 34645787  T
Q  529 aactgtaattcccgatatcggcgagtatctcatgacctattcagttggtaccccaccatttaagttatatggtattgttgataccggtagtgatattgtt 628  Q
    ||||||||| |||||||  || |  ||||||||||||||||||||||||||||| |||  |||| |||||||||||| |||||| |||||||| ||||||    
T  34645788 aactgtaatccccgataggggtggttatctcatgacctattcagttggtacccctccaactaagatatatggtattgctgatacaggtagtgacattgtt 34645887  T
Q  629 tggcttcaatgtgagccttgtcaagaatgttacaaccaaaccactcctatgtttaatccgtcgaaatcgtcaagttacaaaaacat 714  Q
    ||||||||||| ||||||||| || |||||||||||||||||||||| || |||||||| || ||||| || ||||||||||||||    
T  34645888 tggcttcaatgcgagccttgtgaacaatgttacaaccaaaccactcccatttttaatccatcaaaatcatctagttacaaaaacat 34645973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 162; E-Value: 4e-86
Query Start/End: Original strand, 329 - 714
Target Start/End: Original strand, 34665282 - 34665667
Alignment:
Q  329 ttttccatctgtttcattgtttctttttctcatgctcaaaagaatggttttagtgttgaactcatccaccgcgactctttaaaatcaccactctataaac 428  Q
    |||||| | |||||||||| ||||||||||||||||| ||  ||||||||||||||||||||||||||||| |||||   ||||||||||  ||| ||||    
T  34665282 ttttccctttgtttcattgcttctttttctcatgctctaagcaatggttttagtgttgaactcatccaccgtgactccccaaaatcaccatactacaaac 34665381  T
Q  429 ctactcaaaacaaataccaattgtttgtcaatgccgcacgtcgttccatcaaccgtgccaatcatttttacaaatattcccttgcaaatatacctcaatc 528  Q
    ||||  |||| |||||||||   |||||| |||| ||||||||||||||||| |||||||||||||| |  ||| ||||     ||| || |||| ||||    
T  34665382 ctaccgaaaataaataccaacactttgtcgatgcagcacgtcgttccatcaatcgtgccaatcatttctttaaagattctgacacaagtacacctgaatc 34665481  T
Q  529 aactgtaattcccgatatcggcgagtatctcatgacctattcagttggtaccccaccatttaagttatatggtattgttgataccggtagtgatattgtt 628  Q
    ||||||||| |||||||  || |  ||||||||||||||||||||||||||||| |||  |||| |||| ||||||| |||||| |||||||| ||||||    
T  34665482 aactgtaatccccgataggggtggttatctcatgacctattcagttggtacccctccaactaagatatacggtattgctgatacaggtagtgacattgtt 34665581  T
Q  629 tggcttcaatgtgagccttgtcaagaatgttacaaccaaaccactcctatgtttaatccgtcgaaatcgtcaagttacaaaaacat 714  Q
    ||||||||||||||||||||| || |||||||||||||||||||||| || |||||||| || ||||| || ||||||||||||||    
T  34665582 tggcttcaatgtgagccttgtgaacaatgttacaaccaaaccactcccatttttaatccatcaaaatcatctagttacaaaaacat 34665667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 1 - 171
Target Start/End: Original strand, 17332566 - 17332736
Alignment:
Q  1 atagtgtgttaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtatgttaattggcttttgggttg 100  Q
    |||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  17332566 atagtgtgctaaataaaattccgagacctatttgcgtgtgaaaattttcagattgcccaaatttttctttttgtaagtgtgttaattggcttttgggttg 17332665  T
Q  101 ggtctaatatgcaaagattatcgatcgagcctgggcgaccgtccggggtcgccggacggtgaaaccgcccc 171  Q
    ||||||||||||||| ||||||||||||||| |||||| || ||||||||||||| |||||||||||||||    
T  17332666 ggtctaatatgcaaaaattatcgatcgagcccgggcgaacgcccggggtcgccgggcggtgaaaccgcccc 17332736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 133; E-Value: 9e-69
Query Start/End: Original strand, 315 - 711
Target Start/End: Complemental strand, 19649971 - 19649575
Alignment:
Q  315 ttacccttctattcttttccatctgtttcattgtttctttttctcatgctcaaaagaatggttttagtgttgaactcatccaccgcgactctttaaaatc 414  Q
    |||||||||| ||||||||| | ||||||||| |||||||||||||| ||| |   ||| |||||||| ||||||||||||||||||| |||| ||||||    
T  19649971 ttacccttcttttcttttccctttgtttcattatttctttttctcattctctacgcaatagttttagttttgaactcatccaccgcgattcttcaaaatc 19649872  T
Q  415 accactctataaacctactcaaaacaaataccaattgtttgtcaatgccgcacgtcgttccatcaaccgtgccaatcatttttacaaatattcccttgca 514  Q
    ||||||||| |||||| | |||||||||| |||     |||||||||| |||||||| |||||||| |||||||||| ||| |  ||| |||||||  |     
T  19649871 accactctacaaacctgcacaaaacaaattccagcatgttgtcaatgctgcacgtcggtccatcaatcgtgccaatcgtttatttaaagattccctctcc 19649772  T
Q  515 aatatacctcaatcaactgtaattcccgatatcggcgagtatctcatgacctattcagttggtaccccaccatttaagttatatggtattgttgataccg 614  Q
    |||| |||| ||||||| |||  |  | ||   || |||||| | ||||| ||||| |||||||| || || |||||  |||||||| |||||||||| |    
T  19649771 aatacacctgaatcaaccgtatatgtcaatggaggtgagtatttgatgacttattcggttggtacacctccgtttaatgtatatggtgttgttgatacag 19649672  T
Q  615 gtagtgatattgtttggcttcaatgtgagccttgtcaagaatgttacaaccaaaccactcctatgtttaatccgtcgaaatcgtcaagttacaaaaa 711  Q
    ||||||| |||||||||||||||||| |||||||| || |||| ||||| |||||||||||||| |||||||| || ||||| ||||||||||||||    
T  19649671 gtagtgacattgtttggcttcaatgtaagccttgtgaacaatgctacaagcaaaccactcctatatttaatccttcaaaatcatcaagttacaaaaa 19649575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 1 - 171
Target Start/End: Original strand, 12278875 - 12279045
Alignment:
Q  1 atagtgtgttaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtatgttaattggcttttgggttg 100  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||    
T  12278875 atagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattggcctttgggttg 12278974  T
Q  101 ggtctaatatgcaaagattatcgatcgagcctgggcgaccgtccggggtcgccggacggtgaaaccgcccc 171  Q
    |||||||| |||||| ||||||||||||| | ||||||||| ||||| ||||||| |||||||||||||||    
T  12278975 ggtctaatgtgcaaaaattatcgatcgagtccgggcgaccgcccgggatcgccgggcggtgaaaccgcccc 12279045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 1 - 171
Target Start/End: Complemental strand, 31680519 - 31680349
Alignment:
Q  1 atagtgtgttaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtatgttaattggcttttgggttg 100  Q
    |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  31680519 atagtgtgctaaataaaattccgagacctatttgcatgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattggcttttgggttg 31680420  T
Q  101 ggtctaatatgcaaagattatcgatcgagcctgggcgaccgtccggggtcgccggacggtgaaaccgcccc 171  Q
    ||||||||  | ||| ||||||||||||||| ||||||||| ||||||||||||| |||||||||||||||    
T  31680419 ggtctaatgcggaaaaattatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccgcccc 31680349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 130; E-Value: 6e-67
Query Start/End: Original strand, 5 - 170
Target Start/End: Complemental strand, 37254789 - 37254624
Alignment:
Q  5 tgtgttaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtatgttaattggcttttgggttgggtc 104  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||    
T  37254789 tgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattgacttttgggttgggtc 37254690  T
Q  105 taatatgcaaagattatcgatcgagcctgggcgaccgtccggggtcgccggacggtgaaaccgccc 170  Q
    |||| |||||| ||||||||||||||||||||||||| | ||||||||||  ||||||||||||||    
T  37254689 taatgtgcaaaaattatcgatcgagcctgggcgaccgcctggggtcgccgagcggtgaaaccgccc 37254624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 1 - 171
Target Start/End: Original strand, 31501731 - 31501901
Alignment:
Q  1 atagtgtgttaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtatgttaattggcttttgggttg 100  Q
    |||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  31501731 atagtgtgctaaataaaatttcgagacctatttgcgtgcgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattggcttttgggttg 31501830  T
Q  101 ggtctaatatgcaaagattatcgatcgagcctgggcgaccgtccggggtcgccggacggtgaaaccgcccc 171  Q
    |||||||| |||||| ||||||||||||||| |||| | || ||||||||||||| |||||||||||||||    
T  31501831 ggtctaatgtgcaaaaattatcgatcgagcccgggcaatcgcccggggtcgccgggcggtgaaaccgcccc 31501901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 1 - 139
Target Start/End: Complemental strand, 33430473 - 33430335
Alignment:
Q  1 atagtgtgttaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtatgttaattggcttttgggttg 100  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  33430473 atagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattggcttttgggttg 33430374  T
Q  101 ggtctaatatgcaaagattatcgatcgagcctgggcgac 139  Q
    ||||||||  ||||| ||||||||||||||| |||||||    
T  33430373 ggtctaatgcgcaaaaattatcgatcgagcccgggcgac 33430335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 1 - 171
Target Start/End: Complemental strand, 10034079 - 10033909
Alignment:
Q  1 atagtgtgttaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtatgttaattggcttttgggttg 100  Q
    |||||||| ||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| | ||||||| |||||||||||||    
T  10034079 atagtgtgctaaataaaattccaagacctatttgcgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaatgggcttttgggttg 10033980  T
Q  101 ggtctaatatgcaaagattatcgatcgagcctgggcgaccgtccggggtcgccggacggtgaaaccgcccc 171  Q
     ||||||| |||||| ||||||||||||||| |||||| ||||||||||||||  |||||  |||||||||    
T  10033979 agtctaatgtgcaaaaattatcgatcgagcccgggcgatcgtccggggtcgccatacggtagaaccgcccc 10033909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 1 - 171
Target Start/End: Complemental strand, 13818129 - 13817959
Alignment:
Q  1 atagtgtgttaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtatgttaattggcttttgggttg 100  Q
    |||||||| |||||||| |||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| | ||||||| |||||||||||||    
T  13818129 atagtgtgctaaataaatttccaagacctatttgcgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaatgggcttttgggttg 13818030  T
Q  101 ggtctaatatgcaaagattatcgatcgagcctgggcgaccgtccggggtcgccggacggtgaaaccgcccc 171  Q
     ||||||| |||||| ||||||||||||||| | ||||||| |||||||||||  |||||  |||||||||    
T  13818029 agtctaatgtgcaaaaattatcgatcgagcccgagcgaccgcccggggtcgccatacggtagaaccgcccc 13817959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 39657521 - 39657673
Alignment:
Q  1 atagtgtgttaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtatgttaattggcttttgggttg 100  Q
    |||||||| ||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| | |||||||  ||||||||||||    
T  39657521 atagtgtgctaaataaaattccaagacctatttgcgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaatgagcttttgggttg 39657620  T
Q  101 ggtctaatatgcaaagattatcgatcgagcctgggcgaccgtccggggtcgcc 153  Q
     ||||||| |||||| |||||| |||||||| |  |||||||| |||||||||    
T  39657621 agtctaatgtgcaaaaattatcaatcgagcccgaacgaccgtctggggtcgcc 39657673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 1 - 170
Target Start/End: Original strand, 36293636 - 36293805
Alignment:
Q  1 atagtgtgttaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtatgttaattggcttttgggttg 100  Q
    |||||||| ||||||||||||| |||||||||| ||||||| |||||||||||||||||||||||||||||||||| | ||||||| |||||||||||||    
T  36293636 atagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaatgggcttttgggttg 36293735  T
Q  101 ggtctaatatgcaaagattatcgatcgagcctgggcgaccgtccggggtcgccggacggtgaaaccgccc 170  Q
     ||||||| | |||| ||||||||||||| | || ||||||  ||||||||||  |||||  ||||||||    
T  36293736 agtctaatgtacaaaaattatcgatcgagtccggacgaccgctcggggtcgccacacggtagaaccgccc 36293805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 16155149 - 16155019
Alignment:
Q  1 atagtgtgttaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtatgttaattggcttttgggttg 100  Q
    |||||||| ||||||||||||| |||||||||||||||||| ||||||||||||||| |||||||||||||| ||| | ||||||| |||||||||||||    
T  16155149 atagtgtgctaaataaaattccaagacctatttgcgtgtgacaattttcagattgcctaaatttttctttttataaatgtgttaatgggcttttgggttg 16155050  T
Q  101 ggtctaatatgcaaagattatcgatcgagcc 131  Q
     ||||||| |||||| |||||||||||||||    
T  16155049 agtctaatgtgcaaaaattatcgatcgagcc 16155019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 1 - 170
Target Start/End: Complemental strand, 39434848 - 39434679
Alignment:
Q  1 atagtgtgttaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtatgttaattggcttttgggttg 100  Q
    |||||||| ||||||||||||  |||||||||| | ||||| ||||||||||||||||||||||||| |||||||| | ||||||| |||||||||||||    
T  39434848 atagtgtgctaaataaaattcaaagacctatttacatgtgacaattttcagattgcccaaatttttcattttgtaaatgtgttaatgggcttttgggttg 39434749  T
Q  101 ggtctaatatgcaaagattatcgatcgagcctgggcgaccgtccggggtcgccggacggtgaaaccgccc 170  Q
     ||||||| || ||| ||||||||||||||| ||||||||| || ||||||||  |||||  ||||||||    
T  39434748 agtctaatgtgaaaaaattatcgatcgagcccgggcgaccgcccagggtcgccacacggtagaaccgccc 39434679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 1 - 151
Target Start/End: Original strand, 1776391 - 1776541
Alignment:
Q  1 atagtgtgttaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtatgttaattggcttttgggttg 100  Q
    |||||||| ||||||||||||| |||||||||||||||||| |||||||| ||||||||||||||||||||||||| | ||||||| | ||||| |||||    
T  1776391 atagtgtgctaaataaaattccaagacctatttgcgtgtgacaattttcaaattgcccaaatttttctttttgtaaatgtgttaatggactttttggttg 1776490  T
Q  101 ggtctaatatgcaaagattatcgatcgagcctgggcgaccgtccggggtcg 151  Q
      | |||| | |||| ||||||||||||||| ||||||||| |||||||||    
T  1776491 actttaatgtacaaaaattatcgatcgagcccgggcgaccgcccggggtcg 1776541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 16333891 - 16334013
Alignment:
Q  1 atagtgtgttaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtatgttaattggcttttgggttg 100  Q
    |||||||| ||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| | ||||||| |||||||||||||    
T  16333891 atagtgtgctaaataaaattccaagacctatttgcgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaatgggcttttgggttg 16333990  T
Q  101 ggtctaatatgcaaagattatcg 123  Q
      |||||| |||||| |||||||    
T  16333991 aatctaatgtgcaaaaattatcg 16334013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 1 - 170
Target Start/End: Original strand, 26283333 - 26283502
Alignment:
Q  1 atagtgtgttaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtatgttaattggcttttgggttg 100  Q
    ||||||||  |||||||||||| |||||||||| ||||||| |||||||||||||||||||||||||||||| ||| | |||||||   ||||| |||||    
T  26283333 atagtgtgccaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttataaatgtgttaatgaactttttggttg 26283432  T
Q  101 ggtctaatatgcaaagattatcgatcgagcctgggcgaccgtccggggtcgccggacggtgaaaccgccc 170  Q
     ||||||| |||||| ||||||||||||||| ||||||||| ||| ||||||   |||||| ||||||||    
T  26283433 agtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccgaggtcgctacacggtggaaccgccc 26283502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 1 - 171
Target Start/End: Complemental strand, 36291523 - 36291353
Alignment:
Q  1 atagtgtgttaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtatgttaattggcttttgggttg 100  Q
    ||||||||||||||||||||| |||||||||||| |||| | |||||| ||||||||||||||||||||||||||| | |||||||   ||||| ||||     
T  36291523 atagtgtgttaaataaaattctgagacctatttgtgtgtaataattttgagattgcccaaatttttctttttgtaaatgtgttaatgaacttttaggtta 36291424  T
Q  101 ggtctaatatgcaaagattatcgatcgagcctgggcgaccgtccggggtcgccggacggtgaaaccgcccc 171  Q
    | |||||| |||||| ||||| |||||| || || |||||| |||| |||| ||| |||||||||||||||    
T  36291423 gatctaatgtgcaaaaattattgatcgaacccggacgaccgcccggagtcggcgggcggtgaaaccgcccc 36291353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 43069029 - 43068899
Alignment:
Q  1 atagtgtgttaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtatgttaattggcttttgggttg 100  Q
    |||||||| |||||||||||||||||| ||||| | ||| |||||||||||||||||||||||||||||||||||| | ||||||| | |||||||||||    
T  43069029 atagtgtgctaaataaaattccgagacttatttacatgtaagaattttcagattgcccaaatttttctttttgtaaatgtgttaatggacttttgggttg 43068930  T
Q  101 ggtctaatatgcaaagattatcgatcgagcc 131  Q
    |||||||| || ||| ||||| |||||||||    
T  43068929 ggtctaatgtgaaaaaattattgatcgagcc 43068899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 1 - 174
Target Start/End: Complemental strand, 19986091 - 19985918
Alignment:
Q  1 atagtgtgttaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtatgttaattggcttttgggttg 100  Q
    |||||||||||||||||||| | |||||||||||||||||| |||||| ||||| ||||||||||||||||||||| | || |||| | |||||||||||    
T  19986091 atagtgtgttaaataaaatttcaagacctatttgcgtgtgataatttttagattacccaaatttttctttttgtaaatgtgctaatggacttttgggttg 19985992  T
Q  101 ggtctaatatgcaaagattatcgatcgagcctgggcgaccgtccggggtcgccggacggtgaaaccgcccccgc 174  Q
      |||||| |||||| ||||||||||||||  || |||||| ||| ||||| |  ||||| ||||| |||||||    
T  19985991 aatctaatgtgcaaaaattatcgatcgagctcggacgaccgcccgaggtcgtcatacggtaaaaccacccccgc 19985918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 2 - 153
Target Start/End: Original strand, 3155647 - 3155798
Alignment:
Q  2 tagtgtgttaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtatgttaattggcttttgggttgg 101  Q
    ||||||| ||||||||||||| ||| |||||||||||||| ||||||||||||| |||||||||||||||| ||| | ||||||| | ||||| |||||     
T  3155647 tagtgtgctaaataaaattccaagatctatttgcgtgtgacaattttcagattgtccaaatttttctttttataaatgtgttaatggacttttaggttga 3155746  T
Q  102 gtctaatatgcaaagattatcgatcgagcctgggcgaccgtccggggtcgcc 153  Q
    ||| ||| |||||| ||||| ||||||||| | ||||||| ||||| |||||    
T  3155747 gtcgaatgtgcaaaaattattgatcgagcccgagcgaccgcccgggatcgcc 3155798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 27 - 140
Target Start/End: Complemental strand, 28801415 - 28801300
Alignment:
Q  27 cctatttgcgtgtgagaattttcagattg--cccaaatttttctttttgtaagtatgttaattggcttttgggttgggtctaatatgcaaagattatcga 124  Q
    |||||||||||||||||||||||| |||   ||||||||||||||||||||||| ||||||| ||||||||| |||| |||||| |||||| ||||||||    
T  28801415 cctatttgcgtgtgagaattttcatatttttcccaaatttttctttttgtaagtgtgttaatgggcttttggtttggatctaatgtgcaaaaattatcga 28801316  T
Q  125 tcgagcctgggcgacc 140  Q
    ||||||| ||||||||    
T  28801315 tcgagccagggcgacc 28801300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 68 - 173
Target Start/End: Complemental strand, 202724 - 202619
Alignment:
Q  68 tttttgtaagtatgttaattggcttttgggttgggtctaatatgcaaagattatcgatcgagcctgggcgaccgtccggggtcgccggacggtgaaaccg 167  Q
    ||||||| ||| | ||||| |||||||||||| |  ||||| | || | ||||||||||||||| ||||||||  |  |||||| ||| |||||||||||    
T  202724 tttttgttagtgtcttaatgggcttttgggttcgacctaatgtacacaaattatcgatcgagcccgggcgaccacctagggtcgtcgggcggtgaaaccg 202625  T
Q  168 cccccg 173  Q
    ||||||    
T  202624 cccccg 202619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 123 - 171
Target Start/End: Original strand, 26543902 - 26543950
Alignment:
Q  123 gatcgagcctgggcgaccgtccggggtcgccggacggtgaaaccgcccc 171  Q
    ||||||||| ||||||||| ||||||||||||| |||| ||||||||||    
T  26543902 gatcgagcccgggcgaccgcccggggtcgccgggcggtaaaaccgcccc 26543950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 135; Significance: 6e-70; HSPs: 42)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 135; E-Value: 6e-70
Query Start/End: Original strand, 4 - 170
Target Start/End: Original strand, 43143602 - 43143768
Alignment:
Q  4 gtgtgttaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtatgttaattggcttttgggttgggt 103  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||    
T  43143602 gtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattggcttttgggttgagt 43143701  T
Q  104 ctaatatgcaaagattatcgatcgagcctgggcgaccgtccggggtcgccggacggtgaaaccgccc 170  Q
    ||||| |||||| ||||||||||||||| ||||||||| ||||||||| ||||||||||||||||||    
T  43143702 ctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgtcggacggtgaaaccgccc 43143768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 1 - 171
Target Start/End: Original strand, 3292911 - 3293081
Alignment:
Q  1 atagtgtgttaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtatgttaattggcttttgggttg 100  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  3292911 atagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattggcttttgggttg 3293010  T
Q  101 ggtctaatatgcaaagattatcgatcgagcctgggcgaccgtccggggtcgccggacggtgaaaccgcccc 171  Q
    ||||||||  ||||| ||||||||||||||| ||||||||| |||||||| | || |||||||||||||||    
T  3293011 ggtctaatgggcaaaaattatcgatcgagcccgggcgaccgcccggggtcactgggcggtgaaaccgcccc 3293081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 1 - 171
Target Start/End: Original strand, 6690250 - 6690420
Alignment:
Q  1 atagtgtgttaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtatgttaattggcttttgggttg 100  Q
    |||||||| ||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||    
T  6690250 atagtgtgctaaataaaatttcgagacctatttgcgtgtgagaattttcagtttgcccaaatttttctttttgtaagtgtgttaattggcttttgggttg 6690349  T
Q  101 ggtctaatatgcaaagattatcgatcgagcctgggcgaccgtccggggtcgccggacggtgaaaccgcccc 171  Q
    ||||||||  ||||| ||||||||||||||| ||||||||| ||||||||||||| |||||||||||||||    
T  6690350 ggtctaatgcgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccgcccc 6690420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 1 - 171
Target Start/End: Original strand, 30216757 - 30216927
Alignment:
Q  1 atagtgtgttaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtatgttaattggcttttgggttg 100  Q
    |||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||    
T  30216757 atagtgtgctaaataaaattccgagatctatttgcatgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattagcttttgggttg 30216856  T
Q  101 ggtctaatatgcaaagattatcgatcgagcctgggcgaccgtccggggtcgccggacggtgaaaccgcccc 171  Q
    |||||||| |||||| ||||||||||||||| ||||||||| ||||||||||||||||||||| |||||||    
T  30216857 ggtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccggacggtgaatccgcccc 30216927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 123; E-Value: 8e-63
Query Start/End: Original strand, 1 - 171
Target Start/End: Original strand, 50205092 - 50205262
Alignment:
Q  1 atagtgtgttaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtatgttaattggcttttgggttg 100  Q
    |||||||| ||||||||||||| |||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |||||||||||||||||||||    
T  50205092 atagtgtgctaaataaaattccaagacctatttgcgtgtgagaattttcagattgtccaattttttctttttgtaagtgtgttaattggcttttgggttg 50205191  T
Q  101 ggtctaatatgcaaagattatcgatcgagcctgggcgaccgtccggggtcgccggacggtgaaaccgcccc 171  Q
    | |||||| |||||| ||||||||||||||  ||||||||| ||||| |||||||||||||||||||||||    
T  50205192 gatctaatgtgcaaaaattatcgatcgagctcgggcgaccgcccgggatcgccggacggtgaaaccgcccc 50205262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 4 - 167
Target Start/End: Original strand, 42333794 - 42333957
Alignment:
Q  4 gtgtgttaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtatgttaattggcttttgggttgggt 103  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||    
T  42333794 gtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattggcttttgggttgagt 42333893  T
Q  104 ctaatatgcaaagattatcgatcgagcctgggcgaccgtccggggtcgccggacggtgaaaccg 167  Q
    ||||| |||||| ||||||||| ||||| || |||||| ||||| |||| ||||||||||||||    
T  42333894 ctaatgtgcaaaaattatcgattgagcccggacgaccgcccgggatcgctggacggtgaaaccg 42333957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 4 - 171
Target Start/End: Original strand, 10352902 - 10353069
Alignment:
Q  4 gtgtgttaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtatgttaattggcttttgggttgggt 103  Q
    ||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| | ||||||| | ||||| ||||||||    
T  10352902 gtgtgctaaataaaattccgagacctatttgcgtgtaagaattttcagattgcccaaatttttccttttgtaaatgtgttaatggactttttggttgggt 10353001  T
Q  104 ctaatatgcaaagattatcgatcgagcctgggcgaccgtccggggtcgccggacggtgaaaccgcccc 171  Q
    ||||| |||||| ||||||||| ||||| ||||||||| | |||||||||||||||||||||||||||    
T  10353002 ctaatgtgcaaaaattatcgattgagcccgggcgaccgccaggggtcgccggacggtgaaaccgcccc 10353069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 453 - 714
Target Start/End: Original strand, 45644907 - 45645169
Alignment:
Q  453 ttgtcaatgccgcacgtcgttccatcaaccgtgccaatcatttttacaaatattcccttgcaaatatacctcaatcaactgtaattcccgatatcggcga 552  Q
    |||||||||| |||| |||||||||||  |||| ||||||||| || ||| |||| || |||| || |||| |||||||||| || ||| |||  ||       
T  45644907 ttgtcaatgcagcacatcgttccatcattcgtgtcaatcatttctataaaaattctctcgcaagtacacctgaatcaactgtgatccccaatacaggttc 45645006  T
Q  553 gtatctcatgacctattcagttggtaccccaccatttaagtt-atatggtattgttgataccggtagtgatattgtttggcttcaatgtgagccttgtca 651  Q
     |||||||||| ||||| |||||||||||||||||||||||| |||||||||| | ||||| |||||||| ||||||||||||||||| ||||||||| |    
T  45645007 ttatctcatgaactattgagttggtaccccaccatttaagtttatatggtattatcgatacaggtagtgacattgtttggcttcaatgcgagccttgtaa 45645106  T
Q  652 agaatgttacaaccaaaccactcctatgtttaatccgtcgaaatcgtcaagttacaaaaacat 714  Q
    | |||||||||||||||||||||||| ||||||||| || ||||| |||||||||| ||||||    
T  45645107 acaatgttacaaccaaaccactcctaagtttaatccatcaaaatcatcaagttacataaacat 45645169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 348 - 649
Target Start/End: Original strand, 1389888 - 1390191
Alignment:
Q  348 tttctttttctcatgctcaaaagaatggttttagtgttgaactcatccaccgcgactctttaaaatcaccactctataaacctactcaaaacaaatacca 447  Q
    ||||| |||||  ||||| ||| ||||| ||||||||||||||||||||||| ||||||| |||||||||||||||  ||||||| ||||| ||||||||    
T  1389888 tttctctttctactgctctaaacaatggctttagtgttgaactcatccaccgtgactcttcaaaatcaccactctaccaacctacacaaaataaatacca 1389987  T
Q  448 attgtttgtcaatgccgcacgtcgttccatcaaccgtgccaatcatttttacaaatattcccttgcaaatatacctcaatcaactgtaattcccgatatc 547  Q
    |  || ||||||||||   | |||||||||  | |||| | ||||||| ||| || |||||||| | || | |||| |||| ||||| || |||| ||      
T  1389988 a-cgtgtgtcaatgccatgcatcgttccattgatcgtgtcgatcatttctactaacattcccttactaacaaacctaaatccactgtgatccccgctaaa 1390086  T
Q  548 ggcgagtatctcatgacctattcagttggtaccccaccatttaag---ttatatggtattgttgataccggtagtgatattgtttggcttcaatgtgagc 644  Q
    || |||| ||| |||||||||||||| |||||||||||||| |||   |||||||||||||||||||| |||||||| || ||||||||||||||| |||    
T  1390087 ggtgagtttcttatgacctattcagtcggtaccccaccattaaagttattatatggtattgttgatacaggtagtgacatggtttggcttcaatgtaagc 1390186  T
Q  645 cttgt 649  Q
    |||||    
T  1390187 cttgt 1390191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 98; E-Value: 7e-48
Query Start/End: Original strand, 1 - 170
Target Start/End: Complemental strand, 20129462 - 20129293
Alignment:
Q  1 atagtgtgttaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtatgttaattggcttttgggttg 100  Q
    ||||||||  |||||||||||  |||||||||| ||||||| |||||||||||||||||||||||||||||||||| | ||||||| |||||||||||||    
T  20129462 atagtgtgccaaataaaattctaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaatgggcttttgggttg 20129363  T
Q  101 ggtctaatatgcaaagattatcgatcgagcctgggcgaccgtccggggtcgccggacggtgaaaccgccc 170  Q
     ||||||| |||||| ||||||||||||||| ||||||||| ||||||||||   |||||| ||||||||    
T  20129362 agtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgctacacggtggaaccgccc 20129293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 98; E-Value: 7e-48
Query Start/End: Original strand, 1 - 170
Target Start/End: Complemental strand, 48989480 - 48989311
Alignment:
Q  1 atagtgtgttaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtatgttaattggcttttgggttg 100  Q
    |||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| | |||||| ||||    
T  48989480 atagtgtgctaaataaaattccgagacctatttgcgtatgagaattttcagattgcccaaatttttctttttgtaagtgtgttaatggacttttgagttg 48989381  T
Q  101 ggtctaatatgcaaagattatcgatcgagcctgggcgaccgtccggggtcgccggacggtgaaaccgccc 170  Q
    ||| |||| |||||| |||||||||||| || ||  ||||| |||| |||| ||| ||||||||| ||||    
T  48989380 ggtttaatgtgcaaaaattatcgatcgaacccggttgaccgcccggagtcgtcgggcggtgaaactgccc 48989311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 44156803 - 44156668
Alignment:
Q  1 atagtgtgttaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtatgttaattggcttttgggttg 100  Q
    |||||||| ||||||||||||||||||||||||||||| |||||||||||||||| ||||| |||||||||||||||| |||||||||||||||||||||    
T  44156803 atagtgtgctaaataaaattccgagacctatttgcgtgagagaattttcagattgtccaaaattttctttttgtaagtgtgttaattggcttttgggttg 44156704  T
Q  101 ggtctaatatgcaaagattatcgatcgagcctgggc 136  Q
    |||||||| |||||| ||||||| | ||||| ||||    
T  44156703 ggtctaatgtgcaaaaattatcggttgagcccgggc 44156668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 1 - 170
Target Start/End: Complemental strand, 25930860 - 25930691
Alignment:
Q  1 atagtgtgttaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtatgttaattggcttttgggttg 100  Q
    |||||||| ||||||||||||| |||||||||||||||||| |||||||| ||||||||||||||||||||||||| | ||||||| |||||||||||||    
T  25930860 atagtgtgctaaataaaattccaagacctatttgcgtgtgacaattttcaaattgcccaaatttttctttttgtaaatgtgttaatgggcttttgggttg 25930761  T
Q  101 ggtctaatatgcaaagattatcgatcgagcctgggcgaccgtccggggtcgccggacggtgaaaccgccc 170  Q
     || |||| |||||| ||||| ||||||||| ||||||||| || ||||||||  |||||  ||||||||    
T  25930760 agtttaatgtgcaaaaattatagatcgagcccgggcgaccgcccagggtcgccatacggtagaaccgccc 25930691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 1 - 170
Target Start/End: Original strand, 26439294 - 26439463
Alignment:
Q  1 atagtgtgttaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtatgttaattggcttttgggttg 100  Q
    ||||||||| |||||||||| | |||||||||| ||||||| |||||||||||||||||||||||||||||| ||| | ||||||| |||||||||||||    
T  26439294 atagtgtgtcaaataaaatttcaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttataaatgtgttaatgggcttttgggttg 26439393  T
Q  101 ggtctaatatgcaaagattatcgatcgagcctgggcgaccgtccggggtcgccggacggtgaaaccgccc 170  Q
     ||||||| |||||| |||||||| |||||| ||||||||| ||||||||||   |||||| ||||||||    
T  26439394 agtctaatgtgcaaaaattatcgaccgagcccgggcgaccgcccggggtcgctacacggtggaaccgccc 26439463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 1 - 170
Target Start/End: Original strand, 34407299 - 34407468
Alignment:
Q  1 atagtgtgttaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtatgttaattggcttttgggttg 100  Q
    ||||||||| |||||||||| | |||||||||| ||||||| |||||||||||||||||||||||||||||| ||| | ||||||| |||||||||||||    
T  34407299 atagtgtgtcaaataaaatttcaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttataaatgtgttaatgggcttttgggttg 34407398  T
Q  101 ggtctaatatgcaaagattatcgatcgagcctgggcgaccgtccggggtcgccggacggtgaaaccgccc 170  Q
     ||||||| |||||| |||||||| |||||| ||||||||| ||||||||||   |||||| ||||||||    
T  34407399 agtctaatgtgcaaaaattatcgaccgagcccgggcgaccgcccggggtcgctacacggtggaaccgccc 34407468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 1 - 176
Target Start/End: Original strand, 28877265 - 28877440
Alignment:
Q  1 atagtgtgttaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtatgttaattggcttttgggttg 100  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||  |||||||| |||||| |||||    
T  28877265 atagtgtgctaaataaaattccgagacctatttgcgtgtgagaatttttagatttcccaaatttttctttttataagcgtgttaattagcttttaggttg 28877364  T
Q  101 ggtctaatatgcaaagattatcgatcgagcctgggcgaccgtccggggtcgccggacggtgaaaccgcccccgcca 176  Q
      |||||| |||||| |||||||||| ||||   |||||||  |||||||  ||||||||||||||||||| ||||    
T  28877365 aatctaatgtgcaaaaattatcgatctagcccaagcgaccgcacggggtcatcggacggtgaaaccgcccctgcca 28877440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 35546105 - 35545977
Alignment:
Q  1 atagtgtgttaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtatgttaattggcttttgggttg 100  Q
    |||||||| |||||||||||| |||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||    
T  35546105 atagtgtgctaaataaaattcagagacccatttgcgtgtgagaattttcagattgcccaaaattttctttttgtaagtgtgttaattggcttttgggttg 35546006  T
Q  101 ggtctaatatgcaaagattatcgatcgag 129  Q
    ||||| ||  ||||| ||| |||||||||    
T  35546005 ggtctgatgcgcaaaaattgtcgatcgag 35545977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 29319720 - 29319869
Alignment:
Q  1 atagtgtgttaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtatgttaattggcttttgggttg 100  Q
    |||||||| ||||||||||||| |||| |||||| |||||| |||||||||||||| ||||||||||||||||||| | ||||||| || ||||||||||    
T  29319720 atagtgtgctaaataaaattccaagacttatttgtgtgtgacaattttcagattgctcaaatttttctttttgtaaatgtgttaatgggattttgggttg 29319819  T
Q  101 ggtctaatatgcaaagattatcgatcgagcctgggcgaccgtccggggtc 150  Q
     ||||||| |||||| |||||||||||||||||| |||||| | ||||||    
T  29319820 agtctaatgtgcaaaaattatcgatcgagcctggacgaccgccaggggtc 29319869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 1 - 170
Target Start/End: Original strand, 29995998 - 29996167
Alignment:
Q  1 atagtgtgttaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtatgttaattggcttttgggttg 100  Q
    |||||||| | ||||||||||||||| |||||||||||  ||||||||||||||||||||||||||||||| |||| | ||||||| | ||||| |||||    
T  29995998 atagtgtgcttaataaaattccgagaactatttgcgtgcaagaattttcagattgcccaaatttttcttttcgtaaatgtgttaatggactttttggttg 29996097  T
Q  101 ggtctaatatgcaaagattatcgatcgagcctgggcgaccgtccggggtcgccggacggtgaaaccgccc 170  Q
     ||||||| | |||| ||||||||||||| | || |||||||||||| ||| ||| ||||||||||||||    
T  29996098 agtctaatgtacaaaaattatcgatcgagtccggacgaccgtccgggatcgtcgggcggtgaaaccgccc 29996167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 1 - 170
Target Start/End: Complemental strand, 43356056 - 43355887
Alignment:
Q  1 atagtgtgttaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtatgttaattggcttttgggttg 100  Q
    ||||||||| |||||||||| | |||||||||| ||||||| |||||||||||||||||||||||||||||| ||| | ||||||| |||||||||||||    
T  43356056 atagtgtgtcaaataaaatttcaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttataaatgtgttaatgggcttttgggttg 43355957  T
Q  101 ggtctaatatgcaaagattatcgatcgagcctgggcgaccgtccggggtcgccggacggtgaaaccgccc 170  Q
     ||||||| |||||| |||||||| |||||| ||||||| | | ||||||||   |||||| ||||||||    
T  43355956 agtctaatgtgcaaaaattatcgaccgagcccgggcgactgcctggggtcgctacacggtggaaccgccc 43355887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 5 - 171
Target Start/End: Original strand, 17511252 - 17511418
Alignment:
Q  5 tgtgttaaataaaatt-ccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtatgttaattggcttttgggttgggt 103  Q
    |||| ||||||||||| || |||||||||||||||| | |||||||| ||||||||||||||||||||||||| | ||||||| ||||||||||||| ||    
T  17511252 tgtgctaaataaaatttccaagacctatttgcgtgtaacaattttcaaattgcccaaatttttctttttgtaaatgtgttaatgggcttttgggttgagt 17511351  T
Q  104 ctaatatgcaaagattatcgatcgagcctgggcgaccgtccggggtcgccggacggtgaaaccgcccc 171  Q
    ||||| |||||| ||||||||||||| ||||||||||| || ||||||||  |||||  |||||||||    
T  17511352 ctaatgtgcaaaaattatcgatcgagtctgggcgaccg-ccagggtcgccatacggtagaaccgcccc 17511418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 1 - 171
Target Start/End: Complemental strand, 26448204 - 26448035
Alignment:
Q  1 atagtgtgttaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtatgttaattggcttttgggttg 100  Q
    |||||||| ||||||||||||||| ||||||||| || |||||||||||||||||||||||||||| ||||||||||| ||||||| | ||||||||||     
T  26448204 atagtgtgctaaataaaattccgaaacctatttgtgtatgagaattttcagattgcccaaattttt-tttttgtaagtgtgttaatggacttttgggtta 26448106  T
Q  101 ggtctaatatgcaaagattatcgatcgagcctgggcgaccgtccggggtcgccggacggtgaaaccgcccc 171  Q
    | | |||| |||||| ||||||||||||| | || ||| ||  ||| |||||||| |||||||||||||||    
T  26448105 gatttaatgtgcaaaaattatcgatcgagtccggacgatcgcacggagtcgccgggcggtgaaaccgcccc 26448035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 1 - 170
Target Start/End: Complemental strand, 13012340 - 13012171
Alignment:
Q  1 atagtgtgttaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtatgttaattggcttttgggttg 100  Q
    ||||||||  |||||||||||| |||||||||| ||||||| |||||||| ||||||||||||||||||||| ||| | |||||||  |||||| |||||    
T  13012340 atagtgtgccaaataaaattccaagacctatttacgtgtgacaattttcaaattgcccaaatttttctttttataaatgtgttaatgagctttttggttg 13012241  T
Q  101 ggtctaatatgcaaagattatcgatcgagcctgggcgaccgtccggggtcgccggacggtgaaaccgccc 170  Q
      |||||| |||||| ||||||||||||||| ||||||||| ||||||||||   |||||| ||||||||    
T  13012240 aatctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgctacacggtggaaccgccc 13012171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 2 - 171
Target Start/End: Original strand, 30077647 - 30077815
Alignment:
Q  2 tagtgtgttaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtatgttaattggcttttgggttgg 101  Q
    ||||||| ||||||||||| | ||||||||||| |||| | ||||||||||||| |||||||||||||||||||| | |||||||   ||||| ||||||    
T  30077647 tagtgtgctaaataaaatttcaagacctatttgtgtgtaaaaattttcagattgtccaaatttttctttttgtaaatgtgttaatgaactttttggttgg 30077746  T
Q  102 gtctaatatgcaaagattatcgatcgagcctgggcgaccgtccggggtcgccggacggtgaaaccgcccc 171  Q
    ||||||| ||||||  |||||||| ||||||||||||||| ||| ||||| ||| |||||||||||||||    
T  30077747 gtctaatgtgcaaaatttatcgattgagcctgggcgaccgcccgaggtcg-cgggcggtgaaaccgcccc 30077815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 1 - 170
Target Start/End: Complemental strand, 47500925 - 47500756
Alignment:
Q  1 atagtgtgttaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtatgttaattggcttttgggttg 100  Q
    ||||||||  |||||||||||| |||||||||| ||||||| |||||||| ||||||||||||||||||||  ||| | |||||||  |||||| |||||    
T  47500925 atagtgtgccaaataaaattccaagacctatttacgtgtgacaattttcaaattgcccaaatttttcttttcataaatgtgttaatgagctttttggttg 47500826  T
Q  101 ggtctaatatgcaaagattatcgatcgagcctgggcgaccgtccggggtcgccggacggtgaaaccgccc 170  Q
     ||||||| |||||| ||||||||||||||| ||||||||| ||||||||||   |||||| ||||||||    
T  47500825 agtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgctacacggtggaaccgccc 47500756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 36382361 - 36382512
Alignment:
Q  1 atagtgtgttaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtatgttaattggcttttgggttg 100  Q
    |||||||| ||||||||||||| |||||||||||||||||| ||||||||||||| ||||||||||| |||||||| | ||||||| | ||||| |||||    
T  36382361 atagtgtgctaaataaaattccaagacctatttgcgtgtgacaattttcagattgtccaaatttttc-ttttgtaaatgtgttaatggactttttggttg 36382459  T
Q  101 ggtctaatatgcaaagattatcgatcgagcctgggcgaccgtccggggtcgcc 153  Q
     || |||| |||||| ||||| ||||||||| ||||||||| |||||||||||    
T  36382460 agtttaatgtgcaaaaattatggatcgagcccgggcgaccgcccggggtcgcc 36382512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 27 - 164
Target Start/End: Complemental strand, 30110084 - 30109945
Alignment:
Q  27 cctatttgcgtgtgagaattttcagatt--gcccaaatttttctttttgtaagtatgttaattggcttttgggttgggtctaatatgcaaagattatcga 124  Q
    ||||||||||||||||| |||||| |||  | |||||||||||||||||||||| ||||||| | |||| || ||||||||||| |||||| ||||||||    
T  30110084 cctatttgcgtgtgagatttttcatattttgtccaaatttttctttttgtaagtgtgttaatggtctttgggtttgggtctaatgtgcaaaaattatcga 30109985  T
Q  125 tcgagcctgggcgaccgtccggggtcgccggacggtgaaa 164  Q
    ||||| | ||||||||||||||||||| ||| ||||||||    
T  30109984 tcgagtccgggcgaccgtccggggtcgtcgggcggtgaaa 30109945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 1817869 - 1817755
Alignment:
Q  1 atagtgtgttaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtatgttaattggcttttgggttg 100  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||| | | ||||| | ||||||| |||    
T  1817869 atagtgtgttaaataaaattccgagacctatttgcgtgtaagaatttttagattgcccaaatttttctttttataaatgtattaatggacttttggattg 1817770  T
Q  101 ggtctaatatgcaaa 115  Q
    | |||||| ||||||    
T  1817769 gatctaatgtgcaaa 1817755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 1 - 171
Target Start/End: Original strand, 13392896 - 13393055
Alignment:
Q  1 atagtgtgttaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtatgttaattggcttttgggttg 100  Q
    |||||||| ||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||  ||    ||      ||| |||||    
T  13392896 atagtgtgctaaataaaatttcgagacctatttgcgtgtgagaatttttagattgcccaaatttttctttttgta--ta---caa------tttaggttg 13392984  T
Q  101 ggtctaatatgcaaagattatcgatcgagcctgggcgaccgtccggggtcgccggacggtgaaaccgcccc 171  Q
    | | |||||||||||  | |||||| ||||| |||||||||||||||||||| || |||||||||||||||    
T  13392985 gatgtaatatgcaaaagtcatcgattgagcccgggcgaccgtccggggtcgctgggcggtgaaaccgcccc 13393055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 1 - 171
Target Start/End: Original strand, 13396035 - 13396194
Alignment:
Q  1 atagtgtgttaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtatgttaattggcttttgggttg 100  Q
    |||||||| ||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||  ||    ||      ||| |||||    
T  13396035 atagtgtgctaaataaaatttcgagacctatttgcgtgtgagaatttttagattgcccaaatttttctttttgta--ta---caa------tttaggttg 13396123  T
Q  101 ggtctaatatgcaaagattatcgatcgagcctgggcgaccgtccggggtcgccggacggtgaaaccgcccc 171  Q
    | | |||||||||||  | |||||| ||||| |||||||||||||||||||| || |||||||||||||||    
T  13396124 gatgtaatatgcaaaagtcatcgattgagcccgggcgaccgtccggggtcgctgggcggtgaaaccgcccc 13396194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 27 - 141
Target Start/End: Complemental strand, 48130087 - 48129978
Alignment:
Q  27 cctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtatgttaattggcttttgggttgggtctaatatgcaaagattatcgatc 126  Q
    ||||||||||||||||| ||||||     ||||||||||||||||||||||| |||||||  ||||||||||||||||||||||||||| ||||||||||    
T  48130087 cctatttgcgtgtgagagttttca-----cccaaatttttctttttgtaagtgtgttaatgagcttttgggttgggtctaatatgcaaaaattatcgatc 48129993  T
Q  127 gagcctgggcgaccg 141  Q
    ||||| || ||||||    
T  48129992 gagcccggtcgaccg 48129978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 6235672 - 6235575
Alignment:
Q  1 atagtgtgttaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtatgttaattggcttttgggt 98  Q
    |||||||| ||||||||||||| |||||||||||||||||| |||||||| ||||||||||||||||||||||||| | ||||||| | |||||||||    
T  6235672 atagtgtgctaaataaaattccaagacctatttgcgtgtgacaattttcaaattgcccaaatttttctttttgtaaatgtgttaatggacttttgggt 6235575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 40529167 - 40529039
Alignment:
Q  1 atagtgtgttaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtatgttaattggcttttgggttg 100  Q
    |||||||| ||||||||||||| |||||||||||| ||||| |||||||| |||| |||||||||||||||||||| | |||||||  | |||| |||||    
T  40529167 atagtgtgctaaataaaattccaagacctatttgcatgtgacaattttcaaattgtccaaatttttctttttgtaaatgtgttaatgagtttttaggttg 40529068  T
Q  101 ggtctaatatgcaaagattatcgatcgag 129  Q
     || |||| |||||| |||||||||||||    
T  40529067 agtttaatgtgcaaaaattatcgatcgag 40529039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 68 - 171
Target Start/End: Complemental strand, 27363446 - 27363343
Alignment:
Q  68 tttttgtaagtatgttaattggcttttgggttgggtctaatatgcaaagattatcgatcgagcctgggcgaccgtccggggtcgccggacggtgaaaccg 167  Q
    ||||||||||| ||||||| ||||||||||||||| |||||||||||| |   ||||||||||| ||||||||| ||| |||||||  ||||| ||||||    
T  27363446 tttttgtaagtgtgttaatgggcttttgggttgggcctaatatgcaaaaaaattcgatcgagcccgggcgaccgcccgaggtcgccatacggtaaaaccg 27363347  T
Q  168 cccc 171  Q
    ||||    
T  27363346 cccc 27363343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 112 - 170
Target Start/End: Complemental strand, 7769369 - 7769311
Alignment:
Q  112 caaagattatcgatcgagcctgggcgaccgtccggggtcgccggacggtgaaaccgccc 170  Q
    |||| ||||||||||||||| ||||||||| | ||||||||||||||||||||||||||    
T  7769369 caaaaattatcgatcgagcccgggcgaccgcctggggtcgccggacggtgaaaccgccc 7769311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 117 - 171
Target Start/End: Original strand, 49908783 - 49908837
Alignment:
Q  117 attatcgatcgagcctgggcgaccgtccggggtcgccggacggtgaaaccgcccc 171  Q
    ||||||||||||||| ||||||||| ||||||||||||| |||||||||||||||    
T  49908783 attatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccgcccc 49908837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 60 - 128
Target Start/End: Complemental strand, 6254637 - 6254569
Alignment:
Q  60 aatttttctttttgtaagtatgttaattggcttttgggttgggtctaatatgcaaagattatcgatcga 128  Q
    ||||||| |||||| |||| ||||||||| |||||||||||||| |||| |||||| ||||||||||||    
T  6254637 aatttttttttttgcaagtgtgttaattgtcttttgggttgggtttaatgtgcaaaaattatcgatcga 6254569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 116 - 172
Target Start/End: Complemental strand, 17555033 - 17554977
Alignment:
Q  116 gattatcgatcgagcctgggcgaccgtccggggtcgccggacggtgaaaccgccccc 172  Q
    |||||||||||||||| ||||||||  ||||||||| ||||||||||||||||||||    
T  17555033 gattatcgatcgagcccgggcgaccacccggggtcgtcggacggtgaaaccgccccc 17554977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 116 - 171
Target Start/End: Original strand, 6212028 - 6212083
Alignment:
Q  116 gattatcgatcgagcctgggcgaccgtccggggtcgccggacggtgaaaccgcccc 171  Q
    |||||||||||||||  ||||||||| ||| |||||||||||||||||||||||||    
T  6212028 gattatcgatcgagctcgggcgaccgcccgaggtcgccggacggtgaaaccgcccc 6212083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 117 - 171
Target Start/End: Original strand, 5517495 - 5517549
Alignment:
Q  117 attatcgatcgagcctgggcgaccgtccggggtcgccggacggtgaaaccgcccc 171  Q
    |||||||||||||||  |||||||| ||||||||||||| |||||||||||||||    
T  5517495 attatcgatcgagcccaggcgaccgcccggggtcgccgggcggtgaaaccgcccc 5517549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 53 - 170
Target Start/End: Complemental strand, 45194276 - 45194159
Alignment:
Q  53 ttgcccaaatttttctttttgtaagtatgttaattggcttttgggttgggtctaatatgcaaagattatcgatcgagcctgggcgaccgtccggggtcgc 152  Q
    ||||||||  |||| ||||||||||| ||||||| | ||||||||||| || |||| |||||| ||||| ||||||| | |||| | || | |||||||     
T  45194276 ttgcccaatattttttttttgtaagtgtgttaatggacttttgggttgagtttaatgtgcaaaaattattgatcgagtccgggcaatcgcctggggtcgt 45194177  T
Q  153 cggacggtgaaaccgccc 170  Q
    ||| ||||||||| ||||    
T  45194176 cgggcggtgaaactgccc 45194159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 373 - 423
Target Start/End: Original strand, 45644853 - 45644903
Alignment:
Q  373 tggttttagtgttgaactcatccaccgcgactctttaaaatcaccactcta 423  Q
    |||||||||||||||||| || ||||||||||| | |||||||||||||||    
T  45644853 tggttttagtgttgaacttattcaccgcgactcctcaaaatcaccactcta 45644903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 135; Significance: 6e-70; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 135; E-Value: 6e-70
Query Start/End: Original strand, 4 - 170
Target Start/End: Original strand, 11018230 - 11018396
Alignment:
Q  4 gtgtgttaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtatgttaattggcttttgggttgggt 103  Q
    ||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||    
T  11018230 gtgtgctaaataaaattctgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattggcttttgggttgagt 11018329  T
Q  104 ctaatatgcaaagattatcgatcgagcctgggcgaccgtccggggtcgccggacggtgaaaccgccc 170  Q
    ||||| |||||| ||||||||||||||||||||||||| |||| |||||||||||||||||||||||    
T  11018330 ctaatgtgcaaaaattatcgatcgagcctgggcgaccgcccggagtcgccggacggtgaaaccgccc 11018396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 1 - 170
Target Start/End: Complemental strand, 45183133 - 45182964
Alignment:
Q  1 atagtgtgttaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtatgttaattggcttttgggttg 100  Q
    |||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  45183133 atagtgtgctaaataaaattccgagacctatttgtgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattggcttttgggttg 45183034  T
Q  101 ggtctaatatgcaaagattatcgatcgagcctgggcgaccgtccggggtcgccggacggtgaaaccgccc 170  Q
    ||||||||  ||||| ||||||||||||||| ||||||||| ||||||||||||| ||||||||||||||    
T  45183033 ggtctaatgcgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccgccc 45182964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 1 - 171
Target Start/End: Original strand, 6930909 - 6931079
Alignment:
Q  1 atagtgtgttaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtatgttaattggcttttgggttg 100  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | |||||||||||||||||||||    
T  6930909 atagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcctaaatttttctttttgtaaatgtgttaattggcttttgggttg 6931008  T
Q  101 ggtctaatatgcaaagattatcgatcgagcctgggcgaccgtccggggtcgccggacggtgaaaccgcccc 171  Q
    | ||||||  ||||| ||||||||||||||| ||||||||||||||||||||||| |||||||||||||||    
T  6931009 gatctaatgcgcaaaaattatcgatcgagcccgggcgaccgtccggggtcgccgggcggtgaaaccgcccc 6931079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 1 - 171
Target Start/End: Complemental strand, 33041105 - 33040935
Alignment:
Q  1 atagtgtgttaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtatgttaattggcttttgggttg 100  Q
    |||||||| |||||||||||||||||||||||||||||||| |||||||| ||||  ||||||||||||||||||||| |||||||| ||||||||||||    
T  33041105 atagtgtgctaaataaaattccgagacctatttgcgtgtgaaaattttcaaattgttcaaatttttctttttgtaagtgtgttaattagcttttgggttg 33041006  T
Q  101 ggtctaatatgcaaagattatcgatcgagcctgggcgaccgtccggggtcgccggacggtgaaaccgcccc 171  Q
    ||||||||||||||| |||||| |||||||| | ||||||| ||||||||||||| |||||||||||||||    
T  33041005 ggtctaatatgcaaaaattatcaatcgagcccgagcgaccgcccggggtcgccgggcggtgaaaccgcccc 33040935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 4 - 170
Target Start/End: Original strand, 6503587 - 6503753
Alignment:
Q  4 gtgtgttaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtatgttaattggcttttgggttgggt 103  Q
    ||||| ||||||||| |||||||||||||||| ||||||||||||||||||||  |||||||||||||||||||| || |||||||||||||||||| ||    
T  6503587 gtgtgctaaataaaaatccgagacctatttgcctgtgagaattttcagattgcttaaatttttctttttgtaagtgtgctaattggcttttgggttgagt 6503686  T
Q  104 ctaatatgcaaagattatcgatcgagcctgggcgaccgtccggggtcgccggacggtgaaaccgccc 170  Q
    ||||| |||||| || |||||||||||| ||||||||| ||||||||||||||||||||||||||||    
T  6503687 ctaatttgcaaaaataatcgatcgagcccgggcgaccgcccggggtcgccggacggtgaaaccgccc 6503753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 2 - 171
Target Start/End: Original strand, 19565517 - 19565686
Alignment:
Q  2 tagtgtgttaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtatgttaattggcttttgggttgg 101  Q
    ||||||| |||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| | ||||||| |  |||| ||||||    
T  19565517 tagtgtgctaaataaaattccgagacctatttgcgtgtaagaattttcagattgtccaaatttttctttttgtaaatgtgttaatggattttttggttgg 19565616  T
Q  102 gtctaatatgcaaagattatcgatcgagcctgggcgaccgtccggggtcgccggacggtgaaaccgcccc 171  Q
    ||||||| |||||| ||||||||| || || ||||||||| ||||| ||||||| |||||||||||||||    
T  19565617 gtctaatgtgcaaaaattatcgattgaacccgggcgaccgcccgggatcgccgggcggtgaaaccgcccc 19565686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 98; E-Value: 7e-48
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 27935330 - 27935165
Alignment:
Q  1 atagtgtgttaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtatgttaattggcttttgggttg 100  Q
    ||||| || |||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| |||||||  ||||||||||||    
T  27935330 atagtatgctaaataaaattccgagacctattttcgtatgagaattttcagattgcccaaatttttctttttgtaagtgtgttaatgagcttttgggttg 27935231  T
Q  101 ggtctaatatgcaaagattatcgatcgagcctgggcgaccgtccggggtcgccggacggtgaaacc 166  Q
    ||| |||| |||||| ||||||||||||||| ||||||| | || |||| ||| | ||||||||||    
T  27935230 ggtttaatgtgcaaaaattatcgatcgagcccgggcgactgcccagggttgccaggcggtgaaacc 27935165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 1 - 170
Target Start/End: Complemental strand, 39771942 - 39771773
Alignment:
Q  1 atagtgtgttaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtatgttaattggcttttgggttg 100  Q
    ||||||||| |||||||||| | |||||||||| ||||||| |||||||||||||||||||||||||||||| ||| | ||||||| |||||||||||||    
T  39771942 atagtgtgtcaaataaaatttcaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttataaatgtgttaatgggcttttgggttg 39771843  T
Q  101 ggtctaatatgcaaagattatcgatcgagcctgggcgaccgtccggggtcgccggacggtgaaaccgccc 170  Q
     ||||||| |||||| |||||||| |||||| ||||||||| ||||||||||   |||||| ||||||||    
T  39771842 agtctaatgtgcaaaaattatcgaccgagcccgggcgaccgcccggggtcgctacacggtggaaccgccc 39771773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 2 - 171
Target Start/End: Complemental strand, 45336025 - 45335857
Alignment:
Q  2 tagtgtgttaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtatgttaattggcttttgggttgg 101  Q
    ||||||| ||||||||||||| |||||||||||||||| ||||||||||||||||||| |||||||||||||||| | |||||| || ||||| ||||||    
T  45336025 tagtgtgctaaataaaattccaagacctatttgcgtgtaagaattttcagattgcccagatttttctttttgtaaatgtgttaa-tgactttttggttgg 45335927  T
Q  102 gtctaatatgcaaagattatcgatcgagcctgggcgaccgtccggggtcgccggacggtgaaaccgcccc 171  Q
    ||||||| || ||| ||||||||| ||| | ||||||||| ||| ||||||||| |||||||||||||||    
T  45335926 gtctaatgtgtaaaaattatcgattgagtccgggcgaccgcccgaggtcgccgggcggtgaaaccgcccc 45335857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 1 - 152
Target Start/End: Original strand, 6269441 - 6269592
Alignment:
Q  1 atagtgtgttaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtatgttaattggcttttgggttg 100  Q
    |||||||| ||||||||||||| |||||||||| ||||||| |||||||||||||||||||||||||||||||||| | ||||||| |||||||||||||    
T  6269441 atagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaatgggcttttgggttg 6269540  T
Q  101 ggtctaatatgcaaagattatcgatcgagcctgggcgaccgtccggggtcgc 152  Q
     ||||||| |||||| ||||||||||||| | || |||||| ||||| ||||    
T  6269541 agtctaatgtgcaaaaattatcgatcgagtccggacgaccgcccgggatcgc 6269592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 19390298 - 19390146
Alignment:
Q  1 atagtgtgttaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtatgttaattggcttttgggttg 100  Q
    |||||||| ||||||||||||| |||||||||| ||||||| |||||||||||||||||||||||||||||||||| | ||||||| | ||||| |||||    
T  19390298 atagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaatagacttttaggttg 19390199  T
Q  101 ggtctaatatgcaaagattatcgatcgagcctgggcgaccgtccggggtcgcc 153  Q
     ||||||| |||||| |||||||||||| || || |||||| |||||||||||    
T  19390198 agtctaatgtgcaaaaattatcgatcgaacccggacgaccgcccggggtcgcc 19390146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 1 - 152
Target Start/End: Original strand, 22968459 - 22968610
Alignment:
Q  1 atagtgtgttaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtatgttaattggcttttgggttg 100  Q
    |||||||| ||||||||||| | |||||||||| ||||||| |||||| ||||||||||||||||||||||||||| | ||||||| ||||||||||||     
T  22968459 atagtgtgctaaataaaatttcaagacctatttacgtgtgacaatttttagattgcccaaatttttctttttgtaaatgtgttaatgggcttttgggtta 22968558  T
Q  101 ggtctaatatgcaaagattatcgatcgagcctgggcgaccgtccggggtcgc 152  Q
     ||||||| |||||| ||||||||||||||| || |||||| ||||||||||    
T  22968559 agtctaatgtgcaaaaattatcgatcgagcccggacgaccgcccggggtcgc 22968610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 34084137 - 34084289
Alignment:
Q  1 atagtgtgttaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtatgttaattggcttttgggttg 100  Q
    |||||||| ||||||||||||| |||||||||||||||||| |||||||| ||||||||||||||||||||||||| | ||||||| | ||||| |||||    
T  34084137 atagtgtgctaaataaaattccaagacctatttgcgtgtgataattttcatattgcccaaatttttctttttgtaaatgtgttaatggactttttggttg 34084236  T
Q  101 ggtctaatatgcaaagattatcgatcgagcctgggcgaccgtccggggtcgcc 153  Q
      | |||| |||||| ||||||||||||| | ||||||||| |||||||||||    
T  34084237 aatttaatgtgcaaaaattatcgatcgagtccgggcgaccgcccggggtcgcc 34084289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 1 - 170
Target Start/End: Complemental strand, 35514414 - 35514249
Alignment:
Q  1 atagtgtgttaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtatgttaattggcttttgggttg 100  Q
    ||||||||  |||||||||||| ||||||||||||| ||||||||||||| |||| ||||||||||||||||||     ||||||| | |||||||||||    
T  35514414 atagtgtgcaaaataaaattcctagacctatttgcgagtgagaattttcatattgtccaaatttttctttttgtg----tgttaatggacttttgggttg 35514319  T
Q  101 ggtctaatatgcaaagattatcgatcgagcctgggcgaccgtccggggtcgccggacggtgaaaccgccc 170  Q
    | |||| ||||| || ||||||||||||||| || |||||||||||||||||||| ||||||||| ||||    
T  35514318 gatctagtatgcgaaaattatcgatcgagcccggacgaccgtccggggtcgccgggcggtgaaactgccc 35514249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 40081756 - 40081893
Alignment:
Q  1 atagtgtgttaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtatgttaattggcttttgggttg 100  Q
    |||||||| |||| ||||| || ||| |||||||||||||| |||||||| ||||||||||||||||||||||||| | |||||||  |||||| |||||    
T  40081756 atagtgtgctaaaaaaaat-ccaagatctatttgcgtgtgacaattttcaaattgcccaaatttttctttttgtaaatgtgttaatgagctttt-ggttg 40081853  T
Q  101 ggtctaatatgcaaagattatcgatcgagcctgggcgacc 140  Q
     ||||||| | |||| ||||||||||||||| ||||||||    
T  40081854 agtctaatgttcaaaaattatcgatcgagcccgggcgacc 40081893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 27 - 134
Target Start/End: Complemental strand, 5135397 - 5135288
Alignment:
Q  27 cctatttgcgtgtgagaattttcagatt--gcccaaatttttctttttgtaagtatgttaattggcttttgggttgggtctaatatgcaaagattatcga 124  Q
    |||||||| |||||||||||||| ||||  | |||||||||||||||||||||| |||||||  |||||| ||||||||||||| | |||| || |||||    
T  5135397 cctatttgtgtgtgagaattttcggattttgtccaaatttttctttttgtaagtgtgttaatgagcttttaggttgggtctaatgtacaaaaataatcga 5135298  T
Q  125 tcgagcctgg 134  Q
    ||||||||||    
T  5135297 tcgagcctgg 5135288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 117 - 171
Target Start/End: Complemental strand, 6891034 - 6890980
Alignment:
Q  117 attatcgatcgagcctgggcgaccgtccggggtcgccggacggtgaaaccgcccc 171  Q
    ||||||||||||||| ||||||||| |||| |||||||| |||||||||||||||    
T  6891034 attatcgatcgagcccgggcgaccgcccggtgtcgccgggcggtgaaaccgcccc 6890980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 123 - 173
Target Start/End: Complemental strand, 5354739 - 5354689
Alignment:
Q  123 gatcgagcctgggcgaccgtccggggtcgccggacggtgaaaccgcccccg 173  Q
    ||||||||| ||||||||| ||||||||||||| ||||||||| |||||||    
T  5354739 gatcgagcccgggcgaccgcccggggtcgccgggcggtgaaactgcccccg 5354689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 132; Significance: 4e-68; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 132; E-Value: 4e-68
Query Start/End: Original strand, 1 - 171
Target Start/End: Complemental strand, 8147504 - 8147333
Alignment:
Q  1 atagtgtgttaaataaaattccgagacctatttgcgtgtgagaatttt-cagattgcccaaatttttctttttgtaagtatgttaattggcttttgggtt 99  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| |||||| |||    
T  8147504 atagtgtgttaaataaaattccgagatctatttgcgtgtgagaatttttcagattgcccaaatttttctttttgtaagtgtgttaattgacttttgagtt 8147405  T
Q  100 gggtctaatatgcaaagattatcgatcgagcctgggcgaccgtccggggtcgccggacggtgaaaccgcccc 171  Q
    ||||||||| |||||||||||||||||||||| ||||||||| ||||||||||||| |||||||||||||||    
T  8147404 gggtctaatgtgcaaagattatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccgcccc 8147333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 1 - 171
Target Start/End: Complemental strand, 45418735 - 45418565
Alignment:
Q  1 atagtgtgttaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtatgttaattggcttttgggttg 100  Q
    |||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  45418735 atagtgtgctaaataaaattcagagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattggcttttgggttg 45418636  T
Q  101 ggtctaatatgcaaagattatcgatcgagcctgggcgaccgtccggggtcgccggacggtgaaaccgcccc 171  Q
    | ||||||  ||||| ||||||||||||||| ||||||||| ||||||||||||| |||||||||||||||    
T  45418635 gatctaatgcgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccgcccc 45418565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 1 - 171
Target Start/End: Original strand, 44084618 - 44084788
Alignment:
Q  1 atagtgtgttaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtatgttaattggcttttgggttg 100  Q
    |||||||| |||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||   ||||||| |||    
T  44084618 atagtgtgctaaataaaattctgagacctatttgcgtatgagaattttcagattgcccaaatttttctttttgtaagtgtgttaatgaacttttggattg 44084717  T
Q  101 ggtctaatatgcaaagattatcgatcgagcctgggcgaccgtccggggtcgccggacggtgaaaccgcccc 171  Q
    ||| |||| |||||| ||||||||||||||| ||||||| | ||||||||||||| |||||||||||||||    
T  44084718 ggtttaatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgccgggcggtgaaaccgcccc 44084788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 5 - 171
Target Start/End: Complemental strand, 771147 - 770976
Alignment:
Q  5 tgtgttaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtatgttaattggcttttgggttgggtc 104  Q
    |||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| |||||||||    
T  771147 tgtgctaaataaagttccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaatgggctttttggttgggtc 771048  T
Q  105 taatatgcaaagattatcgatcgagcctgggcgaccgtccgg-----ggtcgccggacggtgaaaccgcccc 171  Q
    |||| ||||||  |||||||||||||| ||||||||| ||||     ||||||||| |||||||||||||||    
T  771047 taatgtgcaaaagttatcgatcgagcccgggcgaccgcccgggatccggtcgccgggcggtgaaaccgcccc 770976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 4 - 170
Target Start/End: Original strand, 8059351 - 8059517
Alignment:
Q  4 gtgtgttaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtatgttaattggcttttgggttgggt 103  Q
    ||||| ||||||||||||||||||| ||||| ||||||||||||||| |||| |||||||||||||||||||||| |||||||||||||||||||||  |    
T  8059351 gtgtgctaaataaaattccgagaccgatttgtgtgtgagaattttcaaattggccaaatttttctttttgtaagtgtgttaattggcttttgggttgact 8059450  T
Q  104 ctaatatgcaaagattatcgatcgagcctgggcgaccgtccggggtcgccggacggtgaaaccgccc 170  Q
    ||||| |||||| ||||||||| |||||||||||| || ||||||||| ||| ||||||||||||||    
T  8059451 ctaatgtgcaaaaattatcgattgagcctgggcgatcggccggggtcgtcgggcggtgaaaccgccc 8059517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 41251649 - 41251798
Alignment:
Q  1 atagtgtgttaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtatgttaattggcttttgggttg 100  Q
    |||||||| ||||||||||||| |||||||||| ||||||| |||||||||||||||||||||||||||||||||| | ||||||| |||||||||||||    
T  41251649 atagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaatgggcttttgggttg 41251748  T
Q  101 ggtctaatatgcaaagattatcgatcgagcctgggcgaccgtccggggtc 150  Q
     ||||||| |||||| ||||||||||||||| ||||||||| ||||||||    
T  41251749 agtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtc 41251798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 1 - 170
Target Start/End: Complemental strand, 42440138 - 42439969
Alignment:
Q  1 atagtgtgttaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtatgttaattggcttttgggttg 100  Q
    |||||||| ||||||||||| | |||||||||||||||||| |||||||||||||||||||||||||||||||||| | ||||||| ||||||||||||     
T  42440138 atagtgtgctaaataaaattgcaagacctatttgcgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaatgggcttttgggttt 42440039  T
Q  101 ggtctaatatgcaaagattatcgatcgagcctgggcgaccgtccggggtcgccggacggtgaaaccgccc 170  Q
     ||||||| |||||| ||||||||||||||| ||||||||| |||||||||||  |||||  ||||||||    
T  42440038 agtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccatacggtagaaccgccc 42439969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 31581637 - 31581789
Alignment:
Q  1 atagtgtgttaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtatgttaattggcttttgggttg 100  Q
    |||||||| ||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| | ||||||| |||||||||| ||    
T  31581637 atagtgtgctaaataaaattccaagacctatttgcgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaatgggcttttgggatg 31581736  T
Q  101 ggtctaatatgcaaagattatcgatcgagcctgggcgaccgtccggggtcgcc 153  Q
     |||||||||||||| | ||||| ||||||||||||||||| ||| |||||||    
T  31581737 agtctaatatgcaaaaagtatcgctcgagcctgggcgaccgcccgtggtcgcc 31581789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 12756852 - 12756979
Alignment:
Q  1 atagtgtgttaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtatgttaattggcttttgggttg 100  Q
    |||||||| |||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||    
T  12756852 atagtgtgctaaataaaattccgagacttatttgcgtgtgagaattttcagattgctcaaatttttctttttgtaagtgtgttaattggcttttgggttg 12756951  T
Q  101 ggtctaatatgcaaagattatcgatcga 128  Q
    ||||||||  ||||| ||||||||||||    
T  12756952 ggtctaatgcgcaaaaattatcgatcga 12756979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 1 - 170
Target Start/End: Complemental strand, 35962867 - 35962698
Alignment:
Q  1 atagtgtgttaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtatgttaattggcttttgggttg 100  Q
    |||||||| ||||||||||||| ||||||||||| |||||| ||||||||||||||||||| |||||||||||||| | |||||||  ||||||||||||    
T  35962867 atagtgtgctaaataaaattccaagacctatttgtgtgtgacaattttcagattgcccaaaattttctttttgtaaatgtgttaataagcttttgggttg 35962768  T
Q  101 ggtctaatatgcaaagattatcgatcgagcctgggcgaccgtccggggtcgccggacggtgaaaccgccc 170  Q
     ||||||| |||||| ||||||||||||||| || |||||| | |||||||||  |||||  ||||||||    
T  35962767 agtctaatgtgcaaaaattatcgatcgagcccggacgaccgcctggggtcgccatacggtagaaccgccc 35962698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 1 - 170
Target Start/End: Original strand, 17445056 - 17445223
Alignment:
Q  1 atagtgtgttaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtatgttaattggcttttgggttg 100  Q
    |||||||| ||||||||||||| |||||||||| ||||||| |||||||||||||||||||||||||||||||||| | ||||||| |||||||||||||    
T  17445056 atagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaatgggcttttgggttg 17445155  T
Q  101 ggtctaatatgcaaagattatcgatcgagcctgggcgaccgtccggggtcgccggacggtgaaaccgccc 170  Q
     |||||   |||||| ||||||||||||||  ||||||||| ||| |||||||  |||||  ||||||||    
T  17445156 agtcta--gtgcaaaaattatcgatcgagctcgggcgaccgcccgaggtcgccacacggtagaaccgccc 17445223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 1 - 170
Target Start/End: Original strand, 6403819 - 6403988
Alignment:
Q  1 atagtgtgttaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtatgttaattggcttttgggttg 100  Q
    ||||||||  |||||||||||| |||||||||| ||||||| |||||||||||||||||||||||||||||| ||| | |||||||   ||||| |||||    
T  6403819 atagtgtgccaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttataaatgtgttaatgaactttttggttg 6403918  T
Q  101 ggtctaatatgcaaagattatcgatcgagcctgggcgaccgtccggggtcgccggacggtgaaaccgccc 170  Q
     ||||||| |||||| ||||||||||||||| ||||||||| ||||||||||   |||||| ||||||||    
T  6403919 agtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgctacacggtggaaccgccc 6403988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 32127156 - 32127308
Alignment:
Q  1 atagtgtgttaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtatgttaattggcttttgggttg 100  Q
    |||||||| ||||||||||||| ||| |||||||||||||| ||||||||||||||| |||||||||||||||||| | |||||||  |||||||||| |    
T  32127156 atagtgtgctaaataaaattccaagatctatttgcgtgtgacaattttcagattgcctaaatttttctttttgtaaatgtgttaatgagcttttgggtcg 32127255  T
Q  101 ggtctaatatgcaaagattatcgatcgagcctgggcgaccgtccggggtcgcc 153  Q
     || |||| |||||| ||||| ||||||||| ||||||||| |||||||||||    
T  32127256 agtttaatgtgcaaaaattattgatcgagcccgggcgaccgcccggggtcgcc 32127308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 16 - 170
Target Start/End: Original strand, 2958131 - 2958284
Alignment:
Q  16 aaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtatgttaattggcttttgggttgggtctaatatgcaaa 115  Q
    ||||||| |||||||||||||||||| |||||||||||| ||||||||||||| ||||||| | ||||||| ||||||||||||| ||||||| ||||||    
T  2958131 aaattccaagacctatttgcgtgtgacaattttcagattacccaaatttttctctttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaa 2958230  T
Q  116 gattatcgatcgagcctgggcgaccgtccggggtcgccggacggtgaaaccgccc 170  Q
     ||||||||||||||| || |||||| |||||||||||  |||||  ||||||||    
T  2958231 -attatcgatcgagcccggacgaccgcccggggtcgccatacggtagaaccgccc 2958284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 16405752 - 16405603
Alignment:
Q  1 atagtgtgttaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtatgttaattggcttttgggttg 100  Q
    |||||||| ||||||||||||| |||| ||||||||||||| ||||||||||||| |||||||||||||||| ||| | |||||||  ||||||||||||    
T  16405752 atagtgtgctaaataaaattccaagacttatttgcgtgtgacaattttcagattgtccaaatttttctttttataaatgtgttaatgagcttttgggttg 16405653  T
Q  101 ggtctaatatgcaaagattatcgatcgagcctgggcgaccgtccggggtc 150  Q
     ||||||  |||||| ||||||||| ||||| ||||||||| || |||||    
T  16405652 agtctaacgtgcaaaaattatcgattgagcccgggcgaccgcccagggtc 16405603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 3 - 147
Target Start/End: Complemental strand, 18981766 - 18981622
Alignment:
Q  3 agtgtgttaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtatgttaattggcttttgggttggg 102  Q
    |||||| ||||||||||||| |||||||||||||||||| |||||| | ||||||||||||||||||||||||| | | ||||| | ||||||||||| |    
T  18981766 agtgtgctaaataaaattccaagacctatttgcgtgtgacaatttttaaattgcccaaatttttctttttgtaaatgttttaatggacttttgggttgag 18981667  T
Q  103 tctaatatgcaaagattatcgatcgagcctgggcgaccgtccggg 147  Q
    |||||| |||||| |||||| |||||||| || |||||| |||||    
T  18981666 tctaatgtgcaaaaattatcaatcgagcccggacgaccgcccggg 18981622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 2286014 - 2285882
Alignment:
Q  1 atagtgtgttaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtatgttaattggcttttgggttg 100  Q
    |||||||| ||||||||||||| | |||||||||||||||| |||||||||||||| |||||||||| ||| |||| | ||||||| | ||||| |||||    
T  2286014 atagtgtgctaaataaaattccaaaacctatttgcgtgtgacaattttcagattgctcaaatttttcctttcgtaaatgtgttaatagactttttggttg 2285915  T
Q  101 ggtctaatatgcaaagattatcgatcgagcctg 133  Q
    | | |||| |||||| |||||||||||| ||||    
T  2285914 gatttaatgtgcaaaaattatcgatcgaacctg 2285882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 39 - 155
Target Start/End: Complemental strand, 26238071 - 26237955
Alignment:
Q  39 tgagaattttcagatt-gcccaaatttttctttttgtaagtatgttaattggcttttgggttgggtctaatatgcaaagattatcgatcgagcctgggcg 137  Q
    ||||| |||||||||| |||||||||||||||||||||||| ||||||| | ||||||| |||  |||||| |||||| | ||||||||||||| |||||    
T  26238071 tgagagttttcagatttgcccaaatttttctttttgtaagtgtgttaatggacttttggtttgcatctaatttgcaaa-aatatcgatcgagcccgggcg 26237973  T
Q  138 accgtccggggtcgccgg 155  Q
    |||| |||||||||||||    
T  26237972 accgcccggggtcgccgg 26237955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 20 - 100
Target Start/End: Original strand, 26162733 - 26162813
Alignment:
Q  20 tccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtatgttaattggcttttgggttg 100  Q
    ||||||||||||||| || |||||||||| ||||||||||||||||||||||||||||| ||||||| || ||||||||||    
T  26162733 tccgagacctatttgtgtttgagaatttttagattgcccaaatttttctttttgtaagtgtgttaatgggtttttgggttg 26162813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 27 - 129
Target Start/End: Original strand, 4555250 - 4555354
Alignment:
Q  27 cctatttgcgtgtgagaattttcagatt--gcccaaatttttctttttgtaagtatgttaattggcttttgggttgggtctaatatgcaaagattatcga 124  Q
    ||||||| ||||||||||||||||||||  ||||||| |||||||||||||||| ||||||   ||||||||||||||| | || |||||| ||||||||    
T  4555250 cctatttacgtgtgagaattttcagattttgcccaaaattttctttttgtaagtgtgttaacgagcttttgggttgggtttgatgtgcaaaaattatcga 4555349  T
Q  125 tcgag 129  Q
    |||||    
T  4555350 tcgag 4555354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 551 - 711
Target Start/End: Original strand, 28402637 - 28402797
Alignment:
Q  551 gagtatctcatgacctattcagttggtaccccaccatttaagttatatggtattgttgataccggtagtgatattgtttggcttcaatgtgagccttgtc 650  Q
    ||||||||||| |  || ||||||||||||||||| |||||  | |||||| || | ||||| |||||| | || ||||||||||||||  |||||||||    
T  28402637 gagtatctcattagttactcagttggtaccccaccctttaaagtttatggttttatggatacaggtagtaacatagtttggcttcaatgccagccttgtc 28402736  T
Q  651 aagaatgttacaaccaaaccactcctatgtttaatccgtcgaaatcgtcaagttacaaaaa 711  Q
    |   ||||| ||| |||||| ||||||| |||||||| || ||||| ||||||||||||||    
T  28402737 atacatgtttcaatcaaacctctcctatatttaatccttcaaaatcttcaagttacaaaaa 28402797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 551 - 711
Target Start/End: Complemental strand, 45396848 - 45396688
Alignment:
Q  551 gagtatctcatgacctattcagttggtaccccaccatttaagttatatggtattgttgataccggtagtgatattgtttggcttcaatgtgagccttgtc 650  Q
    ||||||||||| |  || ||||||||||||||||| |||||  | || ||| || | ||||| |||||| | || ||||||||||||||  ||||||||     
T  45396848 gagtatctcattagttactcagttggtaccccaccctttaaagtttaaggttttatggatacaggtagtaacatagtttggcttcaatgccagccttgta 45396749  T
Q  651 aagaatgttacaaccaaaccactcctatgtttaatccgtcgaaatcgtcaagttacaaaaa 711  Q
    |   ||||| ||| |||||| ||||||| |||||||| || ||||| ||||||||||||||    
T  45396748 atacatgtttcaatcaaacctctcctatatttaatccttcaaaatcttcaagttacaaaaa 45396688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 572 - 710
Target Start/End: Complemental strand, 44491681 - 44491543
Alignment:
Q  572 gttggtaccccaccatttaagttatatggtattgttgataccggtagtgatattgtttggcttcaatgtgagccttgtcaaga-atgttacaaccaaacc 670  Q
    ||||||||||||||||||||| | || |||  | | ||||| ||||||||  | ||||||||||||||  ||||||| ||| | ||||||||| ||||||    
T  44491681 gttggtaccccaccatttaaggtctacggttctatagatacaggtagtgacttagtttggcttcaatgcaagccttg-caatatatgttacaagcaaacc 44491583  T
Q  671 actcctatgtttaatccgtcgaaatcgtcaagttacaaaa 710  Q
     | ||||| |||||||| || ||||| |||||||||||||    
T  44491582 tcgcctatatttaatccttcaaaatcttcaagttacaaaa 44491543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 141
Target Start/End: Original strand, 7072589 - 7072707
Alignment:
Q  27 cctatttgcgtgtgagaattttcaga--ttgcccaaatttttctttttgtaagtatgt--taattggcttttgggttgggtctaatatgcaaagattatc 122  Q
    ||||||| |||| |||||||||||||  ||| ||||  |||||||||| ||||| |||  |||| ||||||||||||| || |||| |  ||| ||||||    
T  7072589 cctatttacgtgcgagaattttcagaatttgtccaatattttctttttataagtgtgtgttaatgggcttttgggttgagtttaatgtaaaaaaattatc 7072688  T
Q  123 gatcgagcctgggcgaccg 141  Q
    ||||||||| |||||||||    
T  7072689 gatcgagcccgggcgaccg 7072707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 354 - 416
Target Start/End: Complemental strand, 44491820 - 44491758
Alignment:
Q  354 tttctcatgctcaaaagaatggttttagtgttgaactcatccaccgcgactctttaaaatcac 416  Q
    |||||||||||  ||| |||||||| |||||||||||||||||||| || ||||| |||||||    
T  44491820 tttctcatgctttaaacaatggtttcagtgttgaactcatccaccgagattcttttaaatcac 44491758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 123 - 171
Target Start/End: Complemental strand, 34523270 - 34523222
Alignment:
Q  123 gatcgagcctgggcgaccgtccggggtcgccggacggtgaaaccgcccc 171  Q
    ||||||||| ||||||||| ||||||||||||| |||| ||||||||||    
T  34523270 gatcgagcccgggcgaccgcccggggtcgccgggcggtaaaaccgcccc 34523222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 131
Target Start/End: Complemental strand, 34906028 - 34905971
Alignment:
Q  74 taagtatgttaattggcttttgggttgggtctaatatgcaaagattatcgatcgagcc 131  Q
    ||||| ||||||| |||||||||||| ||  |||| |||||| |||||||||||||||    
T  34906028 taagtgtgttaatgggcttttgggttaggcttaatgtgcaaaaattatcgatcgagcc 34905971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 130; Significance: 6e-67; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 130; E-Value: 6e-67
Query Start/End: Original strand, 5 - 170
Target Start/End: Original strand, 34389075 - 34389240
Alignment:
Q  5 tgtgttaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtatgttaattggcttttgggttgggtc 104  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||    
T  34389075 tgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattagcttttgggttgggtc 34389174  T
Q  105 taatatgcaaagattatcgatcgagcctgggcgaccgtccggggtcgccggacggtgaaaccgccc 170  Q
    |||| |||||| ||||||||||||||| ||||||||| ||||||||||||| |||||||| |||||    
T  34389175 taatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaatcgccc 34389240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 123; E-Value: 8e-63
Query Start/End: Original strand, 1 - 171
Target Start/End: Original strand, 8867746 - 8867916
Alignment:
Q  1 atagtgtgttaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtatgttaattggcttttgggttg 100  Q
    |||||||| |||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| | | ||||||||||||||| |||    
T  8867746 atagtgtgctaaataaaattccgagacctatttgcgtgtgaaaattttccgattgcccaaatttttctttttgtaaatgtattaattggcttttggattg 8867845  T
Q  101 ggtctaatatgcaaagattatcgatcgagcctgggcgaccgtccggggtcgccggacggtgaaaccgcccc 171  Q
    ||||||||||||||| ||||||||||||||| ||||||||| ||||||||||||| ||||||||| |||||    
T  8867846 ggtctaatatgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaactgcccc 8867916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 1 - 171
Target Start/End: Complemental strand, 26624898 - 26624727
Alignment:
Q  1 atagtgtgttaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtatgttaattggcttttgggttg 100  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  ||||||| |||    
T  26624898 atagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattaacttttggattg 26624799  T
Q  101 ggtctaatatgcaaagattatcg-atcgagcctgggcgaccgtccggggtcgccggacggtgaaaccgcccc 171  Q
    ||||||||||||||| ||||||| ||||||||  |||||||| ||||||| ||||| |||||||||||||||    
T  26624798 ggtctaatatgcaaaaattatcgaatcgagcccaggcgaccgcccggggttgccgggcggtgaaaccgcccc 26624727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 1 - 171
Target Start/End: Original strand, 37002159 - 37002329
Alignment:
Q  1 atagtgtgttaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtatgttaattggcttttgggttg 100  Q
    |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |||    
T  37002159 atagtgtgctaaataaaattccaagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattgacttttggattg 37002258  T
Q  101 ggtctaatatgcaaagattatcgatcgagcctgggcgaccgtccggggtcgccggacggtgaaaccgcccc 171  Q
    |||||||| |||||| ||||||||||||| | |  |||||| ||||||||||||| |||||||||||||||    
T  37002259 ggtctaatgtgcaaaaattatcgatcgagaccgaacgaccgcccggggtcgccgggcggtgaaaccgcccc 37002329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 113; E-Value: 8e-57
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 35090320 - 35090180
Alignment:
Q  1 atagtgtgttaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtatgttaattggcttttgggttg 100  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||    
T  35090320 atagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattacccaaatttttctttttgtaagtgtgttaattggcttttgggttg 35090221  T
Q  101 ggtctaatatgcaaagattatcgatcgagcctgggcgaccg 141  Q
    |||||||| |||||| ||||| ||||||||| |||||||||    
T  35090220 ggtctaatgtgcaaaaattattgatcgagcccgggcgaccg 35090180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 1 - 171
Target Start/End: Original strand, 43184483 - 43184653
Alignment:
Q  1 atagtgtgttaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtatgttaattggcttttgggttg 100  Q
    |||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  43184483 atagtgtgctaaataaaattcagagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtatgttaattggcttttgggtta 43184582  T
Q  101 ggtctaatatgcaaagattatcgatcgagcctgggcgaccgtccggggtcgccggacggtgaaaccgcccc 171  Q
     |||| ||  | ||| ||||||||||||||| | ||||||| ||||  ||||||| |||||||||||||||    
T  43184583 agtctgatgcgtaaaaattatcgatcgagcccgagcgaccgcccggaatcgccgggcggtgaaaccgcccc 43184653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 1 - 171
Target Start/End: Complemental strand, 33685716 - 33685546
Alignment:
Q  1 atagtgtgttaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtatgttaattggcttttgggttg 100  Q
    |||||||| |||||||||||  ||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||    
T  33685716 atagtgtgctaaataaaattatgagacatatttgcgtatgagaattttcagattgcccaaatttttctttttgtaagtgtgttaatgggcttttgggttg 33685617  T
Q  101 ggtctaatatgcaaagattatcgatcgagcctgggcgaccgtccggggtcgccggacggtgaaaccgcccc 171  Q
    ||| |||| |||||| ||||||||||||||| | ||||| | | ||||||||||| |||||||||||||||    
T  33685616 ggtttaatgtgcaaaaattatcgatcgagcccgagcgactgcctggggtcgccgggcggtgaaaccgcccc 33685546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 3114111 - 3114260
Alignment:
Q  1 atagtgtgttaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtatgttaattggcttttgggttg 100  Q
    |||||||| ||||||||||||| ||||||||||| |||||| |||||||||||||||||||||||||||||||||| | ||||||| |||||||||||||    
T  3114111 atagtgtgctaaataaaattccaagacctatttgtgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaatgggcttttgggttg 3114210  T
Q  101 ggtctaatatgcaaagattatcgatcgagcctgggcgaccgtccggggtc 150  Q
     ||||||| |||||| ||||||||||||||| ||||||||||||||||||    
T  3114211 agtctaatgtgcaaaaattatcgatcgagcccgggcgaccgtccggggtc 3114260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 1 - 170
Target Start/End: Complemental strand, 5555639 - 5555470
Alignment:
Q  1 atagtgtgttaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtatgttaattggcttttgggttg 100  Q
    |||||||| ||||||||||||| ||||||||||| |||||| |||||||||||||||||||||||||||||||||| |  |||||| |||||||||||||    
T  5555639 atagtgtgctaaataaaattccaagacctatttgtgtgtgacaattttcagattgcccaaatttttctttttgtaaatgcgttaatgggcttttgggttg 5555540  T
Q  101 ggtctaatatgcaaagattatcgatcgagcctgggcgaccgtccggggtcgccggacggtgaaaccgccc 170  Q
     ||||||| |||||| ||||||||||||||| ||||||||| |||||||||||  |||||  ||||||||    
T  5555539 agtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccatacggtagaaccgccc 5555470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 38638251 - 38638380
Alignment:
Q  1 atagtgtgttaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtatgttaattggcttttgggttg 100  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||    
T  38638251 atagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattgacttttgggttg 38638350  T
Q  101 ggtctaatatgcaaagattatcgatcgagc 130  Q
    | |||||| |||||| |||||| |||||||    
T  38638351 gatctaatgtgcaaaaattatcaatcgagc 38638380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 36658333 - 36658205
Alignment:
Q  1 atagtgtgttaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtatgttaattggcttttgggttg 100  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |||||    
T  36658333 atagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttatttttgttagtatgttaattggcttttcggttg 36658234  T
Q  101 ggtctaatatgcaaagattatcgatcgag 129  Q
    |||| ||| |||||| |||||||||||||    
T  36658233 ggtccaatgtgcaaaaattatcgatcgag 36658205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 1 - 171
Target Start/End: Complemental strand, 7002877 - 7002707
Alignment:
Q  1 atagtgtgttaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtatgttaattggcttttgggttg 100  Q
    |||||||| |||||||||||||| |||||||||||||||||||||||| |||||| |||||||||| |||||||| || |||||||||||||||||||||    
T  7002877 atagtgtgctaaataaaattccgtgacctatttgcgtgtgagaatttttagattgtccaaatttttatttttgtatgtgtgttaattggcttttgggttg 7002778  T
Q  101 ggtctaatatgcaaagattatcgatcgagcctgggcgaccgtccggggtcgccggacggtgaaaccgcccc 171  Q
    ||| |||| |  ||| ||  ||||||||||| |||||||||  |||||||||||| |||||||||||||||    
T  7002777 ggtgtaatgtagaaaaatcgtcgatcgagcccgggcgaccgctcggggtcgccgggcggtgaaaccgcccc 7002707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 1 - 171
Target Start/End: Complemental strand, 7048748 - 7048578
Alignment:
Q  1 atagtgtgttaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtatgttaattggcttttgggttg 100  Q
    |||||||| |||||||||||||| |||||||||||||||||||||||| |||||| |||||||||| |||||||| || |||||||||||||||||||||    
T  7048748 atagtgtgctaaataaaattccgtgacctatttgcgtgtgagaatttttagattgtccaaatttttatttttgtatgtgtgttaattggcttttgggttg 7048649  T
Q  101 ggtctaatatgcaaagattatcgatcgagcctgggcgaccgtccggggtcgccggacggtgaaaccgcccc 171  Q
    ||| |||| |  ||| ||  ||||||||||| |||||||||  |||||||||||| |||||||||||||||    
T  7048648 ggtgtaatgtagaaaaatcgtcgatcgagcccgggcgaccgctcggggtcgccgggcggtgaaaccgcccc 7048578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 36630968 - 36630816
Alignment:
Q  1 atagtgtgttaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtatgttaattggcttttgggttg 100  Q
    |||||||| ||| ||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| | ||||||| | ||||| |||||    
T  36630968 atagtgtgctaactaaaattccaagacctatttgcgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaatggactttttggttg 36630869  T
Q  101 ggtctaatatgcaaagattatcgatcgagcctgggcgaccgtccggggtcgcc 153  Q
     || |||| |||||| ||||||||||||||| |||||||||||||||||||||    
T  36630868 agtttaatgtgcaaaaattatcgatcgagcccgggcgaccgtccggggtcgcc 36630816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 1 - 152
Target Start/End: Original strand, 14777122 - 14777273
Alignment:
Q  1 atagtgtgttaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtatgttaattggcttttgggttg 100  Q
    |||||||| ||||||||||||| |||||||||| ||||||| |||||||||||||||||||||||||||||||||| | |||||||  ||||||||||||    
T  14777122 atagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaatgagcttttgggttg 14777221  T
Q  101 ggtctaatatgcaaagattatcgatcgagcctgggcgaccgtccggggtcgc 152  Q
     ||||||| |||||| ||||||||||||||| ||||||||| ||||| ||||    
T  14777222 agtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccgggatcgc 14777273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 40920018 - 40920148
Alignment:
Q  1 atagtgtgttaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtatgttaattggcttttgggttg 100  Q
    |||||||| |||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| | ||||||||||||||||||||     
T  40920018 atagtgtgctaaataaaattccgagacctatttgcatgtgagaattttcagattgtccaaatttttctttttgtaaatgtgttaattggcttttgggtta 40920117  T
Q  101 ggtctaatatgcaaagattatcgatcgagcc 131  Q
      |||||| |||||| |||||||||||||||    
T  40920118 aatctaatgtgcaaaaattatcgatcgagcc 40920148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 8394277 - 8394125
Alignment:
Q  1 atagtgtgttaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtatgttaattggcttttgggttg 100  Q
    |||||||| ||||||||||||| |||||||||| ||||||| ||||||||||||||||||||||||| |||||||| | ||||||| | ||||| |||||    
T  8394277 atagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttccttttgtaaatgtgttaatggactttttggttg 8394178  T
Q  101 ggtctaatatgcaaagattatcgatcgagcctgggcgaccgtccggggtcgcc 153  Q
     || |||| |||||| ||||||||||||||| ||||||||| |||||||||||    
T  8394177 agtttaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgcc 8394125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 27 - 94
Target Start/End: Original strand, 10868514 - 10868583
Alignment:
Q  27 cctatttgcgtgtgagaattttcagatt--gcccaaatttttctttttgtaagtatgttaattggctttt 94  Q
    |||||||||| |||||||||||||||||  |||||||||||||||||||||| | ||||||| |||||||    
T  10868514 cctatttgcgcgtgagaattttcagattttgcccaaatttttctttttgtaaatgtgttaatgggctttt 10868583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 166
Target Start/End: Complemental strand, 26502899 - 26502797
Alignment:
Q  63 ttttctttttgtaagtatgttaattggcttttgggttgggtctaatatgcaaagattatcgatcgagcctgggcgaccgtccggggtcgccggacggtga 162  Q
    |||| |||||||| || ||||||| |||||||||||||||  ||||||||||| |   ||||||||||| ||||||| | | |||||||||  ||||||     
T  26502899 ttttttttttgta-gtgtgttaatgggcttttgggttgggcttaatatgcaaaaaaattcgatcgagcccgggcgactgcctggggtcgccacacggtgg 26502801  T
Q  163 aacc 166  Q
    ||||    
T  26502800 aacc 26502797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 166
Target Start/End: Original strand, 26589815 - 26589917
Alignment:
Q  63 ttttctttttgtaagtatgttaattggcttttgggttgggtctaatatgcaaagattatcgatcgagcctgggcgaccgtccggggtcgccggacggtga 162  Q
    |||| |||||||| || ||||||| |||||||||||||||  ||||||||||| |   ||||||||||| ||||||| | | |||||||||  ||||||     
T  26589815 ttttttttttgta-gtgtgttaatgggcttttgggttgggcttaatatgcaaaaaaattcgatcgagcccgggcgactgcctggggtcgccacacggtgg 26589913  T
Q  163 aacc 166  Q
    ||||    
T  26589914 aacc 26589917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 127; Significance: 3e-65; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 1 - 171
Target Start/End: Complemental strand, 28996882 - 28996712
Alignment:
Q  1 atagtgtgttaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtatgttaattggcttttgggttg 100  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |||||    
T  28996882 atagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattgacttttaggttg 28996783  T
Q  101 ggtctaatatgcaaagattatcgatcgagcctgggcgaccgtccggggtcgccggacggtgaaaccgcccc 171  Q
    ||||||||  ||||| ||||||||||||||  ||||||||| ||||||||||||| |||||||||||||||    
T  28996782 ggtctaatgcgcaaaaattatcgatcgagctcgggcgaccgcccggggtcgccgggcggtgaaaccgcccc 28996712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 311 - 714
Target Start/End: Original strand, 34302228 - 34302631
Alignment:
Q  311 tttcttacccttctattcttttccatctgtttcattgtttctttttctcatgctcaaaagaatggttttagtgttgaactcatccaccgcgactctttaa 410  Q
    ||||||||||||   ||||||| | | ||||| | | ||||||||||||| |||  ||  || ||||||||| ||||||| || ||||| ||||| | ||    
T  34302228 tttcttaccctttctttctttttcctttgttttagtatttctttttctcaagctgtaagcaacggttttagtattgaacttatacaccgtgactcctcaa 34302327  T
Q  411 aatcaccactctataaacctactcaaaacaaataccaattgtttgtcaatgccgcacgtcgttccatcaaccgtgccaatcatttttacaaatattccct 510  Q
    |||||||  |||| |||||||| |||||||||||||||    ||||| |||| | || |||||| ||||| |||| |||||| | | ||||| |||| ||    
T  34302328 aatcacctttctacaaacctacacaaaacaaataccaacatgttgtcgatgcagtacatcgttcgatcaatcgtgtcaatcactctaacaaaaattctct 34302427  T
Q  511 tgcaaatatacctcaatcaactgtaattcccgatatcggcgagtatctcatgacctattcagttggtaccccaccatttaagttatatggtattgttgat 610  Q
    ||||| || |||| |||||||||||||  |  ||   || || ||| |||||| |||||||||||| ||||||||| |||||| |||||||||||| |||    
T  34302428 tgcaagtacacctgaatcaactgtaatctcttatgagggtgattatatcatgagctattcagttggcaccccaccaattaagtcatatggtattgtcgat 34302527  T
Q  611 accggtagtgatattgtttggcttcaatgtgagccttgtcaagaatgttacaaccaaaccactcctatgtttaatccgtcgaaatcgtcaagttacaaaa 710  Q
    || |||||||| ||||| ||||| ||||| ||||||||| || |||||||||| ||||||||||||| ||||||||| || || || || ||||||||||    
T  34302528 acaggtagtgacattgtatggctacaatgcgagccttgtgaacaatgttacaatcaaaccactcctaagtttaatccatcaaagtcatcgagttacaaaa 34302627  T
Q  711 acat 714  Q
    ||||    
T  34302628 acat 34302631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 18339258 - 18339106
Alignment:
Q  1 atagtgtgttaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtatgttaattggcttttgggttg 100  Q
    |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| | |||    
T  18339258 atagtgtgctaaataaaattccgagacctatttgcatgtgagaattttcagattgcccaaaattttctttttgtaagtgtgttaattggcttttagattg 18339159  T
Q  101 ggtctaatatgcaaagattatcgatcgagcctgggcgaccgtccggggtcgcc 153  Q
    |||||||| |||||| ||||| ||||||||| ||||||||| |||||||||||    
T  18339158 ggtctaatgtgcaaaaattattgatcgagcccgggcgaccgcccggggtcgcc 18339106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 2 - 171
Target Start/End: Complemental strand, 29743434 - 29743265
Alignment:
Q  2 tagtgtgttaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtatgttaattggcttttgggttgg 101  Q
    ||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| | |||||||   ||||| ||||||    
T  29743434 tagtgtgctaaataaaattccgagacctatttgcgtgtaagaattttcagattgcccaaatttttctttctgtaaatgtgttaatgaactttttggttgg 29743335  T
Q  102 gtctaatatgcaaagattatcgatcgagcctgggcgaccgtccggggtcgccggacggtgaaaccgcccc 171  Q
    ||||||| |||||| ||||||||| ||||| |||| |||| ||||| ||| |||||||||||||||||||    
T  29743334 gtctaatgtgcaaaaattatcgattgagcccgggcaaccgcccgggatcgtcggacggtgaaaccgcccc 29743265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 98; E-Value: 7e-48
Query Start/End: Original strand, 1 - 170
Target Start/End: Original strand, 34948773 - 34948942
Alignment:
Q  1 atagtgtgttaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtatgttaattggcttttgggttg 100  Q
    |||||||| ||||||||||| | ||| ||||||| |||||| |||||||||||||||||||||||||||||||||| | ||||||| |||||||||||||    
T  34948773 atagtgtgctaaataaaatttcaagatctatttgtgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaatgggcttttgggttg 34948872  T
Q  101 ggtctaatatgcaaagattatcgatcgagcctgggcgaccgtccggggtcgccggacggtgaaaccgccc 170  Q
     ||||||| |||||| ||||||||||||||||||||||||| | |||||||||  |||||  ||||||||    
T  34948873 agtctaatgtgcaaaaattatcgatcgagcctgggcgaccgcctggggtcgccatacggtagaaccgccc 34948942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 1 - 170
Target Start/End: Complemental strand, 398769 - 398600
Alignment:
Q  1 atagtgtgttaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtatgttaattggcttttgggttg 100  Q
    ||||||||  |||||||||||| |||||||||| ||||||| |||||||| ||||||||||||||||||||| ||| | |||||||  |||||| |||||    
T  398769 atagtgtgccaaataaaattccaagacctatttacgtgtgacaattttcaaattgcccaaatttttctttttataaatgtgttaatgagctttttggttg 398670  T
Q  101 ggtctaatatgcaaagattatcgatcgagcctgggcgaccgtccggggtcgccggacggtgaaaccgccc 170  Q
     ||||||| |||||| ||||||||||||||| ||||||||| ||||||||||   |||||| ||||||||    
T  398669 agtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgctacacggtggaaccgccc 398600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 1 - 170
Target Start/End: Complemental strand, 13837973 - 13837804
Alignment:
Q  1 atagtgtgttaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtatgttaattggcttttgggttg 100  Q
    |||||||| ||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| | |||| ||  ||||||||||||    
T  13837973 atagtgtgctaaataaaattccaagacctatttgcgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttgatgtgcttttgggttg 13837874  T
Q  101 ggtctaatatgcaaagattatcgatcgagcctgggcgaccgtccggggtcgccggacggtgaaaccgccc 170  Q
     ||||||| | |||| |||||||||||| || | |||| || |||||||||||  |||||  ||||||||    
T  13837873 agtctaatgtacaaaaattatcgatcgaacccgagcgatcgcccggggtcgccatacggtagaaccgccc 13837804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 33229351 - 33229487
Alignment:
Q  1 atagtgtgttaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtatgttaattggcttttgggttg 100  Q
    |||||||| |||||||||| ||||||| ||||| ||||| ||||||||||||||||||||||||||||||||| || | ||||||| | |||||||||||    
T  33229351 atagtgtgctaaataaaatcccgagacttatttacgtgtaagaattttcagattgcccaaatttttctttttggaaatgtgttaatggacttttgggttg 33229450  T
Q  101 ggtctaatatgcaaagattatcgatcgagcctgggcg 137  Q
    |||||||| | |||| || |||||||||||| |||||    
T  33229451 ggtctaatgtacaaaaatgatcgatcgagcccgggcg 33229487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 68 - 169
Target Start/End: Original strand, 24697899 - 24698000
Alignment:
Q  68 tttttgtaagtatgttaattggcttttgggttgggtctaatatgcaaagattatcgatcgagcctgggcgaccgtccggggtcgccggacggtgaaaccg 167  Q
    ||||||||||| ||||||| ||||||||||||||| ||||| || ||| ||||||||| ||||| ||||||  ||||||||||||||| |||||||||||    
T  24697899 tttttgtaagtgtgttaatgggcttttgggttgggcctaatgtgaaaaaattatcgattgagcccgggcgagtgtccggggtcgccgggcggtgaaaccg 24697998  T
Q  168 cc 169  Q
    ||    
T  24697999 cc 24698000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 57 - 167
Target Start/End: Original strand, 31028435 - 31028545
Alignment:
Q  57 ccaaatttttctttttgtaagtatgttaattggcttttgggttgggtctaatatgcaaagattatcgatcgagcctgggcgaccgtccggggtcgccgga 156  Q
    ||||| ||| |||||||||| | |||||||  |||||| |||||| |||||| |||||| ||||||||||||| | |||| ||||  ||||||||||||     
T  31028435 ccaaaatttcctttttgtaaatgtgttaatgagcttttaggttggatctaatgtgcaaaaattatcgatcgagtccgggcaaccgctcggggtcgccggg 31028534  T
Q  157 cggtgaaaccg 167  Q
    |||||||||||    
T  31028535 cggtgaaaccg 31028545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 116 - 171
Target Start/End: Complemental strand, 13647054 - 13646999
Alignment:
Q  116 gattatcgatcgagcctgggcgaccgtccggggtcgccggacggtgaaaccgcccc 171  Q
    |||||||||||||||| ||||||||| |||||||||||||  ||||||||||||||    
T  13647054 gattatcgatcgagcccgggcgaccgcccggggtcgccgggtggtgaaaccgcccc 13646999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 116 - 171
Target Start/End: Original strand, 34385518 - 34385573
Alignment:
Q  116 gattatcgatcgagcctgggcgaccgtccggggtcgccggacggtgaaaccgcccc 171  Q
    |||||||||||||||| |||| |||| ||||||||||||| |||||||||||||||    
T  34385518 gattatcgatcgagccagggcaaccgcccggggtcgccgggcggtgaaaccgcccc 34385573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 68 - 169
Target Start/End: Complemental strand, 24695572 - 24695472
Alignment:
Q  68 tttttgtaagtatgttaattggcttttgggttgggtctaatatgcaaagattatcgatcgagcctgggcgaccgtccggggtcgccggacggtgaaaccg 167  Q
    ||||||||||| ||||||| ||||||||||||| | ||||| |  ||| || ||||||  |||||||||||  ||||| ||||  |||||||||||||||    
T  24695572 tttttgtaagtgtgttaatgggcttttgggttgagcctaatgttaaaaaatgatcgatttagcctgggcgagtgtccgaggtc-tcggacggtgaaaccg 24695474  T
Q  168 cc 169  Q
    ||    
T  24695473 cc 24695472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 629 - 711
Target Start/End: Complemental strand, 33889805 - 33889723
Alignment:
Q  629 tggcttcaatgtgagccttgtcaagaatgttacaaccaaaccactcctatgtttaatccgtcgaaatcgtcaagttacaaaaa 711  Q
    ||||| |||||| ||||||||||    |||| ||| |||||| ||||||| |||||||| || ||||| ||||||||||||||    
T  33889805 tggctccaatgtcagccttgtcatacctgtttcaatcaaacctctcctatatttaatccttcaaaatcttcaagttacaaaaa 33889723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 114; Significance: 2e-57; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 5 - 170
Target Start/End: Complemental strand, 35907700 - 35907535
Alignment:
Q  5 tgtgttaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtatgttaattggcttttgggttgggtc 104  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| |  ||||||||||||||||||||||    
T  35907700 tgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattacccaaaattttctttttgtaagtgtactaattggcttttgggttgggtc 35907601  T
Q  105 taatatgcaaagattatcgatcgagcctgggcgaccgtccggggtcgccggacggtgaaaccgccc 170  Q
    |||| |||||| |||||||||| |||| ||||||||| ||| ||||||||| ||||||||||||||    
T  35907600 taatgtgcaaaaattatcgatcaagcccgggcgaccgcccgaggtcgccgggcggtgaaaccgccc 35907535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 5 - 171
Target Start/End: Complemental strand, 17445461 - 17445295
Alignment:
Q  5 tgtgttaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtatgttaattggcttttgggttgggtc 104  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| ||    
T  17445461 tgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattgacttttgggttggatc 17445362  T
Q  105 taatatgcaaagattatcgatcgagcctgggcgaccgtccggggtcgccggacggtgaaaccgcccc 171  Q
    |||| | |||| ||||| |||| |||| |||||||||   ||||||||||| |  ||||||||||||    
T  17445361 taatgtacaaaaattattgatccagcccgggcgaccgcatggggtcgccgggcaatgaaaccgcccc 17445295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 1 - 170
Target Start/End: Complemental strand, 3829135 - 3828967
Alignment:
Q  1 atagtgtgttaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtatgttaattggcttttgggttg 100  Q
    |||||||| ||||||||||||| |||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |||||||   |||||||||||    
T  3829135 atagtgtgctaaataaaattcc-agacctatttgcgtatgaaaattttcagattgcccaaatttttctttttgtaagtgtgttaatgaacttttgggttg 3829037  T
Q  101 ggtctaatatgcaaagattatcgatcgagcctgggcgaccgtccggggtcgccggacggtgaaaccgccc 170  Q
    ||| |||| |||||| |||||||||||| || | ||||||||||||||| |||||  | |||||||||||    
T  3829036 ggtttaatgtgcaaaaattatcgatcgaacccgagcgaccgtccggggttgccgggtgatgaaaccgccc 3828967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 32982071 - 32982223
Alignment:
Q  1 atagtgtgttaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtatgttaattggcttttgggttg 100  Q
    |||| ||| ||||||||||||| ||||||||||| |||||| ||||||||||||| |||||||||||||||||||| ||||||||| ||||||| |||||    
T  32982071 atagagtgctaaataaaattccaagacctatttgtgtgtgacaattttcagattgtccaaatttttctttttgtaaatatgttaatgggcttttaggttg 32982170  T
Q  101 ggtctaatatgcaaagattatcgatcgagcctgggcgaccgtccggggtcgcc 153  Q
    |||||||| |||||| ||||||||||| ||| | ||||||| |||||||||||    
T  32982171 ggtctaatgtgcaaaaattatcgatcgggcccgcgcgaccgcccggggtcgcc 32982223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 5 - 170
Target Start/End: Original strand, 321396 - 321561
Alignment:
Q  5 tgtgttaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtatgttaattggcttttgggttgggtc 104  Q
    ||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| | ||||||| | |||||||||||| ||    
T  321396 tgtgttaaataaaattccgagacctatttgcatatgagaattttcagattgcccaaatttttctttttgtaactgtgttaatggacttttgggttggatc 321495  T
Q  105 taatatgcaaagattatcgatcgagcctgggcgaccgtccggggtcgccggacggtgaaaccgccc 170  Q
    ||||   |||| ||||||||||||||| || |||||| |||   |||||||  |||||||||||||    
T  321496 taatgcacaaaaattatcgatcgagcccggacgaccgcccgaaatcgccgggtggtgaaaccgccc 321561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 10 - 171
Target Start/End: Original strand, 42310965 - 42311126
Alignment:
Q  10 taaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtatgttaattggcttttgggttgggtctaata 109  Q
    ||||||||||| | |||| ||||||||||||| |||||||||||||||||||||||||||||||||| | ||||||  ||||||||||||| |||||||     
T  42310965 taaataaaatttcaagacttatttgcgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaacgggcttttgggttgagtctaatg 42311064  T
Q  110 tgcaaagattatcgatcgagcctgggcgaccgtccggggtcgccggacggtgaaaccgcccc 171  Q
    |||||| ||||||||||||||| |||||| |||| |||||||||  |||||  |||||||||    
T  42311065 tgcaaaaattatcgatcgagcccgggcgatcgtctggggtcgccatacggtagaaccgcccc 42311126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 1 - 170
Target Start/End: Complemental strand, 26144407 - 26144238
Alignment:
Q  1 atagtgtgttaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtatgttaattggcttttgggttg 100  Q
    ||||||||  |||||||||||| |||||||||| ||||||| |||||||| ||||||||||||||||||||| ||| | |||||||  |||||| |||||    
T  26144407 atagtgtgccaaataaaattccaagacctatttacgtgtgacaattttcaaattgcccaaatttttctttttataaatgtgttaatgagctttttggttg 26144308  T
Q  101 ggtctaatatgcaaagattatcgatcgagcctgggcgaccgtccggggtcgccggacggtgaaaccgccc 170  Q
     ||||||| |||||| ||||||||||||||| ||||||||| ||||||||||   |||||| ||||||||    
T  26144307 agtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgctacacggtggaaccgccc 26144238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 1 - 170
Target Start/End: Complemental strand, 7433597 - 7433428
Alignment:
Q  1 atagtgtgttaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtatgttaattggcttttgggttg 100  Q
    |||||||| ||||||||||| | ||||||||||| |||||| |||||| |||||||||||| |||||||||||||| | ||||||| |||||||||||||    
T  7433597 atagtgtgctaaataaaatttcaagacctatttgtgtgtgacaatttttagattgcccaaaattttctttttgtaaatgtgttaatgggcttttgggttg 7433498  T
Q  101 ggtctaatatgcaaagattatcgatcgagcctgggcgaccgtccggggtcgccggacggtgaaaccgccc 170  Q
     ||||||| |||||| ||||| ||||||||  ||||||||| ||||||| |||  |||||  ||||||||    
T  7433497 agtctaatgtgcaaaaattatagatcgagctcgggcgaccgcccggggttgccatacggtagaaccgccc 7433428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 27 - 171
Target Start/End: Original strand, 41972314 - 41972459
Alignment:
Q  27 cctatttgcgtgtgagaattttcagattgc--ccaaatttttctttttgtaagtatgttaattggcttttgggttgggtctaatatgcaaagattatcga 124  Q
    ||||||||||||||||||||||||||||    |||||||||||||||||||||| ||||||| ||||||| |||||| |||||| |||||| ||||||||    
T  41972314 cctatttgcgtgtgagaattttcagattttttccaaatttttctttttgtaagtgtgttaataggcttttaggttggatctaatgtgcaaaaattatcga 41972413  T
Q  125 tcgagcctgggcgaccgtccggggtcgccggacggtgaaaccgcccc 171  Q
    |||||||  |||||||| |||||||||| |||||||| |||||||||    
T  41972414 tcgagcc-aggcgaccgcccggggtcgctggacggtggaaccgcccc 41972459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 27 - 171
Target Start/End: Complemental strand, 33489815 - 33489669
Alignment:
Q  27 cctatttgcgtgtgagaattttcagatt--gcccaaatttttctttttgtaagtatgttaattggcttttgggttgggtctaatatgcaaagattatcga 124  Q
    ||||||||||||||||||||||||||||  || |||||||||||||| |||||| ||||||| ||||||| | ||| ||||||| | |||| ||||||||    
T  33489815 cctatttgcgtgtgagaattttcagattttgctcaaatttttcttttagtaagtgtgttaatgggcttttagtttgagtctaatgtacaaaaattatcga 33489716  T
Q  125 tcgagcctgggcgaccgtccggggtcgccggacggtgaaaccgcccc 171  Q
     | | || |  ||||||||||||||||||||  ||||||||||||||    
T  33489715 acaatcccgaacgaccgtccggggtcgccgggtggtgaaaccgcccc 33489669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 116 - 171
Target Start/End: Original strand, 44352613 - 44352668
Alignment:
Q  116 gattatcgatcgagcctgggcgaccgtccggggtcgccggacggtgaaaccgcccc 171  Q
    |||||||||||||||| ||||||||  |||||||||||||| ||||||||||||||    
T  44352613 gattatcgatcgagcccgggcgacctcccggggtcgccggatggtgaaaccgcccc 44352668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 117 - 171
Target Start/End: Complemental strand, 31867013 - 31866959
Alignment:
Q  117 attatcgatcgagcctgggcgaccgtccggggtcgccggacggtgaaaccgcccc 171  Q
    ||||||| |||| || ||||||||| ||||||||||||| |||||||||||||||    
T  31867013 attatcggtcgaacccgggcgaccgcccggggtcgccgggcggtgaaaccgcccc 31866959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 47 - 170
Target Start/End: Complemental strand, 23313345 - 23313221
Alignment:
Q  47 ttcagattgcccaaatttttctttttgtaagtatgttaattggcttttgggttgggtctaatatgcaa-agattatcgatcgagcctgggcgaccgtccg 145  Q
    |||||||||||||||||||||||||||||| | |||||||   |||||  |||| ||||||| ||||| | || ||| |||||||| |||| |||| |||    
T  23313345 ttcagattgcccaaatttttctttttgtaaatgtgttaatgaacttttatgttgagtctaatgtgcaacaaatcatcaatcgagcccgggcaaccgcccg 23313246  T
Q  146 gggtcgccggacggtgaaaccgccc 170  Q
     | |||||  |||||  ||||||||    
T  23313245 agatcgccatacggtagaaccgccc 23313221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 111; Significance: 1e-55; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 1 - 171
Target Start/End: Complemental strand, 31632 - 31462
Alignment:
Q  1 atagtgtgttaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtatgttaattggcttttgggttg 100  Q
    ||||||||  |||||||||| | ||||||||||||| |||||||||||||||||| |||||||||||||||||||||| ||||||| |||||||||||||    
T  31632 atagtgtgcaaaataaaattactagacctatttgcgagtgagaattttcagattgtccaaatttttctttttgtaagtgtgttaatgggcttttgggttg 31533  T
Q  101 ggtctaatatgcaaagattatcgatcgagcctgggcgaccgtccggggtcgccggacggtgaaaccgcccc 171  Q
    |||||| | |||||| ||||||||||||||| ||||||||||| ||||||||||| || ||||||||||||    
T  31532 ggtctagtgtgcaaaaattatcgatcgagcccgggcgaccgtctggggtcgccgggcgatgaaaccgcccc 31462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0502 (Bit Score: 109; Significance: 2e-54; HSPs: 1)
Name: scaffold0502
Description:

Target: scaffold0502; HSP #1
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 5382 - 5230
Alignment:
Q  1 atagtgtgttaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtatgttaattggcttttgggttg 100  Q
    |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| | |||    
T  5382 atagtgtgctaaataaaattccgagacctatttgcatgtgagaattttcagattgcccaaaattttctttttgtaagtgtgttaattggcttttagattg 5283  T
Q  101 ggtctaatatgcaaagattatcgatcgagcctgggcgaccgtccggggtcgcc 153  Q
    |||||||| |||||| ||||| ||||||||| ||||||||| |||||||||||    
T  5282 ggtctaatgtgcaaaaattattgatcgagcccgggcgaccgcccggggtcgcc 5230  T

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Target: scaffold0041 (Bit Score: 91; Significance: 1e-43; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 53077 - 52947
Alignment:
Q  1 atagtgtgttaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtatgttaattggcttttgggttg 100  Q
    |||||||| |||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| | ||||||||||||||||||||     
T  53077 atagtgtgctaaataaaattccgagacctatttgcatgtgagaattttcagattgtccaaatttttctttttgtaaatgtgttaattggcttttgggtta 52978  T
Q  101 ggtctaatatgcaaagattatcgatcgagcc 131  Q
      |||||| |||||| |||||||||||||||    
T  52977 aatctaatgtgcaaaaattatcgatcgagcc 52947  T

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Target: scaffold0069 (Bit Score: 86; Significance: 1e-40; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 1 - 170
Target Start/End: Complemental strand, 17994 - 17825
Alignment:
Q  1 atagtgtgttaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtatgttaattggcttttgggttg 100  Q
    |||||||| ||||||||||| | |||||||||| | ||||| |||||||||||||||||||||||||||||||||| | ||||||| |||||||||||||    
T  17994 atagtgtgctaaataaaatttcaagacctatttacatgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaatgggcttttgggttg 17895  T
Q  101 ggtctaatatgcaaagattatcgatcgagcctgggcgaccgtccggggtcgccggacggtgaaaccgccc 170  Q
     ||||||| |||||| ||||||||||||||| || ||| ||  ||||||||||  |||||  ||||||||    
T  17894 agtctaatgtgcaaaaattatcgatcgagcccggacgatcgctcggggtcgccacacggtagaaccgccc 17825  T

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Target: scaffold0002 (Bit Score: 86; Significance: 1e-40; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 1 - 170
Target Start/End: Original strand, 480472 - 480641
Alignment:
Q  1 atagtgtgttaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtatgttaattggcttttgggttg 100  Q
    ||||||||  |||||||||||| |||||||||| ||||||| |||||||| ||||||||||||||||||||| ||| | |||||||  |||||| |||||    
T  480472 atagtgtgccaaataaaattccaagacctatttacgtgtgacaattttcaaattgcccaaatttttctttttataaatgtgttaatgagctttttggttg 480571  T
Q  101 ggtctaatatgcaaagattatcgatcgagcctgggcgaccgtccggggtcgccggacggtgaaaccgccc 170  Q
     ||||||| |||||| ||||||||||||||| ||||||||| ||||||||||   |||||| ||||||||    
T  480572 agtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgctacacggtggaaccgccc 480641  T

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Target: scaffold2142 (Bit Score: 82; Significance: 2e-38; HSPs: 1)
Name: scaffold2142
Description:

Target: scaffold2142; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 1 - 170
Target Start/End: Complemental strand, 674 - 505
Alignment:
Q  1 atagtgtgttaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtatgttaattggcttttgggttg 100  Q
    ||||||||  |||||||||||| |||||||||| ||||||| |||||||| ||||||||||||||||||||| ||| | |||||||  |||||| |||||    
T  674 atagtgtgccaaataaaattccaagacctatttacgtgtgacaattttcaaattgcccaaatttttctttttataaatgtgttaatgagctttttggttg 575  T
Q  101 ggtctaatatgcaaagattatcgatcgagcctgggcgaccgtccggggtcgccggacggtgaaaccgccc 170  Q
     ||||||| |||||| ||||||||||||||| ||||||||| ||||| ||||   |||||| ||||||||    
T  574 agtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccgggatcgctacacggtggaaccgccc 505  T

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Target: scaffold0769 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0769
Description:

Target: scaffold0769; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 123 - 172
Target Start/End: Complemental strand, 1307 - 1258
Alignment:
Q  123 gatcgagcctgggcgaccgtccggggtcgccggacggtgaaaccgccccc 172  Q
    ||||||||| ||||||||| ||||||||||||| |||| |||||||||||    
T  1307 gatcgagcccgggcgaccgcccggggtcgccgggcggtaaaaccgccccc 1258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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