View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2247_low_5 (Length: 498)
Name: NF2247_low_5
Description: NF2247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2247_low_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 450; Significance: 0; HSPs: 19)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 16 - 489
Target Start/End: Complemental strand, 17645165 - 17644692
Alignment:
| Q |
16 |
ttaacattaaaagttggattggtagcatgaaaagacgttgaaagattggacacatttgtttgtgttgaagggaagcctttcacaagttggttactgtaat |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17645165 |
ttaacattaaaagttggattggtagcatgaaaagacgttgaaagattggacacatttgtttgtgttgaagggaagcctttcacaagttggttactgtaat |
17645066 |
T |
|
| Q |
116 |
ttgtttgtgaggaatgaataccattcacaagttggctactatgattgataggataataatgttcttgagattgaaatattggatgattttgaacatttgt |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
17645065 |
ttgtttgtgaggaatgaataccattcacaagttggctactatgattgataggataataatgtttttgagattgaaatattggatgattttgaacatttgt |
17644966 |
T |
|
| Q |
216 |
attgttcaaggcttgtaattgaggagggtaaggttggaactggttacctcttgaattaccaatgttcagcggcgttgagtcttgaaagtttctcatggaa |
315 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17644965 |
attgttcaaggcttgtgattgaggagggtaaggttggaactggttacctcttgaattaccaatgttcagcggcgttgagtcttgaaagtttctcatggaa |
17644866 |
T |
|
| Q |
316 |
gtagctactggaaacccagaaagattactttgtgaattgttaacaagaagaggaccataaataggatgcacatgatgtcttggtactggaggcgaaaact |
415 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17644865 |
gtagatactggaaacccagaaagattactttgtgaattgttaacaaggagaggaccagaaataggatgcacatgatgtcttggtactggaggcgaaaact |
17644766 |
T |
|
| Q |
416 |
gaaccggaaccggttgccttgatgcatttgattcatttcctgtaatgttcttaattaaactcttgaattcatct |
489 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17644765 |
gaaccggaactggttgccttgatgcatttgattcatttcctgtaatgttcttaattaaactcttgaattcatct |
17644692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 69 - 363
Target Start/End: Complemental strand, 17605031 - 17604737
Alignment:
| Q |
69 |
atttgtttgtgttgaagggaagcctttcacaagttggttactgtaatttgtttgtgaggaatgaataccattcacaagttggctactatgattgatagga |
168 |
Q |
| |
|
||||||||||||||||||||| || |||| || ||||||| | |||||||||| ||||||||| | ||||||||| |||| ||||| ||| ||||| |
|
|
| T |
17605031 |
atttgtttgtgttgaagggaaaccattcagaatttggttattagcatttgtttgtaaggaatgaaaatcattcacaaattggttactaccattagtagga |
17604932 |
T |
|
| Q |
169 |
taataatgttcttgagattgaaatattggatgattttgaacatttgtattgttcaaggcttgtaattgaggagggtaaggttggaactggttacctcttg |
268 |
Q |
| |
|
||||||||||||||||||| || ||||||||||| ||||| |||| ||||||| ||| ||||| ||||| |||||||||| || ||||| ||||||| || |
|
|
| T |
17604931 |
taataatgttcttgagatttaattattggatgatattgaaaatttatattgttgaagacttgtgattgatgagggtaaggctgaaactgattacctcctg |
17604832 |
T |
|
| Q |
269 |
aattaccaatgttcagcggcgttgagtcttgaaagtttctcatggaagtagctactggaaacccagaaagattactttgtgaattgttaacaaga |
363 |
Q |
| |
|
||||||||||||||||||| | ||||||| |||||||||| ||| || || ||||||| || || ||||||||||||||| | ||||||| |
|
|
| T |
17604831 |
aattaccaatgttcagcggaaataggtcttgagagtttctcatcaaagaagatattggaaactcaacaatattactttgtgaattttcaacaaga |
17604737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 16 - 393
Target Start/End: Complemental strand, 17631667 - 17631290
Alignment:
| Q |
16 |
ttaacattaaaagttggattggtagcatgaaaagacgttgaaagattggacacatttgtttgtgttgaagggaagcctttcacaagttggttactgtaat |
115 |
Q |
| |
|
||||||||||||||| |||||||| || || |||| ||||| |||| | ||||||||||||| ||||||||| || || | ||||||| || | || |
|
|
| T |
17631667 |
ttaacattaaaagtttgattggtacaattaagagacattgaaggattagccacatttgtttgtaatgaagggaaaccattgagaagttgggtattagcat |
17631568 |
T |
|
| Q |
116 |
ttgtttgtgaggaatgaataccattcacaagttggctactatgattgataggataataatgttcttgagattgaaatattggatgattttgaacatttgt |
215 |
Q |
| |
|
||||||||||||||| ||||||||||| |||| | ||| ||| |||||||||||||||||||||||| || |||||||| || |||||||||| | |
|
|
| T |
17631567 |
ttgtttgtgaggaattggaaccattcacaaattggttgctaccattaataggataataatgttcttgagatgtaattattggattatattgaacatttat |
17631468 |
T |
|
| Q |
216 |
attgttcaaggcttgtaattgaggagggtaaggttggaactggttacctcttgaattaccaatgttcagcggcgttgagtcttgaaagtttctcatggaa |
315 |
Q |
| |
|
|||||| ||| ||||| ||||| |||||||| ||| ||||| ||||||| ||||||||||||||| |||||| | |||||||| |||||||||| ||| |
|
|
| T |
17631467 |
attgttgaagacttgtgattgattagggtaagattgaaactgattacctcctgaattaccaatgtttagcggcaataagtcttgagagtttctcatcgaa |
17631368 |
T |
|
| Q |
316 |
gtagctactggaaacccagaaagattactttgtgaattgttaacaagaagaggaccataaataggatgcacatgatgt |
393 |
Q |
| |
|
| || || ||||||| || ||||||||| ||| ||||| ||||||| || |||| |||||| |||||| ||||| |
|
|
| T |
17631367 |
gcagatattggaaactcaacaagattactccgtggattgtcaacaagaggattaccagtaataggctgcacaggatgt |
17631290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 54 - 394
Target Start/End: Complemental strand, 17645673 - 17645336
Alignment:
| Q |
54 |
tgaaagattggacacatttgtttgtgttgaagggaagcctttcacaagttggttactgtaatttgtttgtgaggaatgaataccattcacaagttggcta |
153 |
Q |
| |
|
|||| |||| ||||||||||||||||||||||| || || ||||||||||||||||| |||||||||||| ||||||| |||||| |||| |||| || |
|
|
| T |
17645673 |
tgaaggattagacacatttgtttgtgttgaaggaaaaccattcacaagttggttactaccatttgtttgtgaagaatgaaaaccattaacaacttggtta |
17645574 |
T |
|
| Q |
154 |
ctatgattgataggataataatgttcttgagattgaaatattggatgattttgaacatttgtattgttcaaggcttgtaattgaggagggtaaggttgga |
253 |
Q |
| |
|
||| ||| |||||||| ||||||| |||||||||| |||||| |||| |||||||||| ||||||| || ||| | ||||||||| | |||| | |
|
|
| T |
17645573 |
ctaccattcataggatacaaatgttcctgagattgaattattggctgatgttgaacatttatattgttgaatacttttggttgaggaggccatagttgaa |
17645474 |
T |
|
| Q |
254 |
actggttacctcttgaattaccaatgttcagcggcgttgagtcttgaaagtttctcatggaagtagctactggaaacccagaaagattactttgtgaatt |
353 |
Q |
| |
|
|||||||||||||||||||||| | ||||| |||| |||||||||||||||||| ||| || |||||| || || ||||||| | |||||||| |
|
|
| T |
17645473 |
actggttacctcttgaattacccaagttca---atgttggatcttgaaagtttctcatgaaagaagaaactggagactcaacaagattattctgtgaatt |
17645377 |
T |
|
| Q |
354 |
gttaacaagaagaggaccataaataggatgcacatgatgtc |
394 |
Q |
| |
|
|| ||||||| ||||| | |||||| ||||||||||||| |
|
|
| T |
17645376 |
gtaaacaagagaaggacgagtaataggttgcacatgatgtc |
17645336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 16 - 365
Target Start/End: Original strand, 16481116 - 16481465
Alignment:
| Q |
16 |
ttaacattaaaagttggattggtagcatgaaaagacgttgaaagattggacacatttgtttgtgttgaagggaagcctttcacaagttggttactgtaat |
115 |
Q |
| |
|
|||||||| ||| || |||||||| ||| ||||||||||||| |||| | || |||||||||| ||||||| || || |||| |||||||||| | || |
|
|
| T |
16481116 |
ttaacattgaaattttgattggtaccattaaaagacgttgaaggattagccatatttgtttgtattgaaggaaaaccattcagaagttggttattagcat |
16481215 |
T |
|
| Q |
116 |
ttgtttgtgaggaatgaataccattcacaagttggctactatgattgataggataataatgttcttgagattgaaatattggatgattttgaacatttgt |
215 |
Q |
| |
|
|||||||||||||||| | || |||||||| |||| ||||| ||| || |||||||||||||| || |||| || |||||| |||| |||||||||| | |
|
|
| T |
16481216 |
ttgtttgtgaggaatggaaacaattcacaatttggttactaccattaattggataataatgttcatgggatttaattattggctgatattgaacatttat |
16481315 |
T |
|
| Q |
216 |
attgttcaaggcttgtaattgaggagggtaaggttggaactggttacctcttgaattaccaatgttcagcggcgttgagtcttgaaagtttctcatggaa |
315 |
Q |
| |
|
||||| ||| ||||| ||||| |||| |||||||| ||||| ||||||| |||||||||||||||| || | ||||||| |||||||||| ||| |
|
|
| T |
16481316 |
gttgttgaagacttgtgattgatgaggataaggttgaaactgattacctcctgaattaccaatgttcgatgggagtatgtcttgagagtttctcatcgaa |
16481415 |
T |
|
| Q |
316 |
gtagctactggaaacccagaaagattactttgtgaattgttaacaagaag |
365 |
Q |
| |
|
| || || ||||||| | ||||||||| || ||||||| ||||||||| |
|
|
| T |
16481416 |
gaagatattggaaacttaacaagattactatgcgaattgtcaacaagaag |
16481465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 75 - 385
Target Start/End: Original strand, 17663967 - 17664273
Alignment:
| Q |
75 |
ttgtgttgaagggaagcctttcacaagttggttactgtaatttgtttgtgaggaatgaataccattcacaagttggctactatgattgataggataataa |
174 |
Q |
| |
|
||||||| ||||||| || ||||||||||||||| ||| |||||||||||||| ||| | |||||||||||||||| ||||| ||| |||||||||| | |
|
|
| T |
17663967 |
ttgtgttaaagggaaaccattcacaagttggttattgtcatttgtttgtgaggtatggaaaccattcacaagttggttactaccattcataggataatga |
17664066 |
T |
|
| Q |
175 |
tgttcttgagattgaaatattggatgattttgaacatttgtattgttcaaggcttgtaattgaggagggtaaggttggaactggttacctcttgaattac |
274 |
Q |
| |
|
||||| || || ||| |||||| | || ||| |||| | |||||| || ||||| |||| ||||||| | ||| ||||||||||||||||||||| |
|
|
| T |
17664067 |
tgttcctggtatggaattattggctaatattggacatctaaattgttgaatacttgtggttgatgagggtaggtttgaaactggttacctcttgaattat |
17664166 |
T |
|
| Q |
275 |
caatgttcagcggcgttgagtcttgaaagtttctcatggaagtagctactggaaacccagaaagattactttgtgaattgttaacaagaagaggaccata |
374 |
Q |
| |
|
| || |||| | |||| |||||||| ||||||||| ||| || | |||| || || |||||||| ||| |||||||| ||||| | || ||||| | |
|
|
| T |
17664167 |
c-atattca---tcattgaatcttgaaattttctcatgaaagcagaaattggagactcaaaaagattattttctgaattgtaaacaaaaggatgaccaga |
17664262 |
T |
|
| Q |
375 |
aataggatgca |
385 |
Q |
| |
|
|||||| |||| |
|
|
| T |
17664263 |
aataggttgca |
17664273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 48 - 272
Target Start/End: Complemental strand, 17650119 - 17649895
Alignment:
| Q |
48 |
agacgttgaaagattggacacatttgtttgtgttgaagggaagcctttcacaagttggttactgtaatttgtttgtgaggaatgaataccattcacaagt |
147 |
Q |
| |
|
|||| ||||| |||| ||||| ||| ||||||||||||||| || ||||||| ||||||| ||| |||||||||||||| ||| | ||||||||||||| |
|
|
| T |
17650119 |
agacattgaaggattagacacgttttcttgtgttgaagggaaaccattcacaacttggttattgtcatttgtttgtgaggcatggaaaccattcacaagt |
17650020 |
T |
|
| Q |
148 |
tggctactatgattgataggataataatgttcttgagattgaaatattggatgattttgaacatttgtattgttcaaggcttgtaattgaggagggtaag |
247 |
Q |
| |
|
||| ||||| ||| |||||||||| |||||| || || | | |||||| |||| ||| |||| | |||||| | ||||| |||| ||||| ||| |
|
|
| T |
17650019 |
tggttactaccattcataggataatgatgttcctggtatgggattattggttgatattggacatctaaattgttgactacttgtggttgatgagggaaag |
17649920 |
T |
|
| Q |
248 |
gttggaactggttacctcttgaatt |
272 |
Q |
| |
|
|||| |||||| ||||||||||||| |
|
|
| T |
17649919 |
gttgaaactggctacctcttgaatt |
17649895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 76 - 272
Target Start/End: Original strand, 17676259 - 17676455
Alignment:
| Q |
76 |
tgtgttgaagggaagcctttcacaagttggttactgtaatttgtttgtgaggaatgaataccattcacaagttggctactatgattgataggataataat |
175 |
Q |
| |
|
|||||||||||||| || ||||||| ||||||| ||| ||||||||| |||| ||| | || ||||||||||||| ||||| ||| |||||||||| || |
|
|
| T |
17676259 |
tgtgttgaagggaaaccattcacaacttggttattgtcatttgtttgggaggcatggaaactattcacaagttggttactaccattcataggataatgat |
17676358 |
T |
|
| Q |
176 |
gttcttgagattgaaatattggatgattttgaacatttgtattgttcaaggcttgtaattgaggagggtaaggttggaactggttacctcttgaatt |
272 |
Q |
| |
|
|||| || || ||| |||||| |||| ||| |||| | |||||| | ||||| |||| ||||| ||||||| |||||||||||||||||||| |
|
|
| T |
17676359 |
gttcctggtatggaattattggttgatattggacatctaaattgttgactacttgtggttgatgagggaaaggttgaaactggttacctcttgaatt |
17676455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 135 - 283
Target Start/End: Complemental strand, 29883512 - 29883364
Alignment:
| Q |
135 |
accattcacaagttggctactatgattgataggataataatgttcttgagattgaaatattggatgattttgaacatttgtattgttcaaggcttgtaat |
234 |
Q |
| |
|
|||||||||||| ||||||||| ||| ||||||||||| ||| ||| ||||||| |||| ||| ||||||||| ||||||||| ||||| || |
|
|
| T |
29883512 |
accattcacaagctggctactaccattcataggataatattgtggttgggattgaattattaattgagattgaacattcacattgttcaatacttgtgat |
29883413 |
T |
|
| Q |
235 |
tgaggagggtaaggttggaactggttacctcttgaattaccaatgttca |
283 |
Q |
| |
|
|||| |||||||||||| |||||||||||||||||| || ||| ||||| |
|
|
| T |
29883412 |
tgagtagggtaaggttgaaactggttacctcttgaactatcaaagttca |
29883364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 24 - 145
Target Start/End: Complemental strand, 17605571 - 17605450
Alignment:
| Q |
24 |
aaaagttggattggtagcatgaaaagacgttgaaagattggacacatttgtttgtgttgaagggaagcctttcacaagttggttactgtaatttgtttgt |
123 |
Q |
| |
|
||||||||| |||||||||| | ||| |||| |||| ||||||||||||||||| |||||||| || |||||||||| ||| || |||||||||| |
|
|
| T |
17605571 |
aaaagttgggttggtagcattcagagatactgaaggattagacacatttgtttgtgtcgaagggaaaccattcacaagttcattaatgacatttgtttgt |
17605472 |
T |
|
| Q |
124 |
gaggaatgaataccattcacaa |
145 |
Q |
| |
|
|| ||||| | ||||||||||| |
|
|
| T |
17605471 |
gaagaatggaaaccattcacaa |
17605450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 163 - 273
Target Start/End: Original strand, 20751390 - 20751500
Alignment:
| Q |
163 |
ataggataataatgttcttgagattgaaatattggatgattttgaacatttgtattgttcaaggcttgtaattgaggagggtaaggttggaactggttac |
262 |
Q |
| |
|
||||||||||||| |||||||||||| |||||| |||| |||||||||| ||||||| || |||| |||| ||||||||||||| || ||||||| |
|
|
| T |
20751390 |
ataggataataatattcttgagattgggttattggctgatattgaacatttatattgttgaataattgtggttgatgagggtaaggttgaaaatggttac |
20751489 |
T |
|
| Q |
263 |
ctcttgaatta |
273 |
Q |
| |
|
|| ||||||| |
|
|
| T |
20751490 |
cttctgaatta |
20751500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 163 - 370
Target Start/End: Original strand, 17950017 - 17950221
Alignment:
| Q |
163 |
ataggataataatgttcttgagattgaaatattggatgattttgaacatttgtattgttcaaggcttgtaattgaggagggtaaggttggaactggttac |
262 |
Q |
| |
|
||||||||||||| |||||||||||| |||||||| || ||| |||||| ||||||| || |||| |||| ||||||||||||| || |||||| |
|
|
| T |
17950017 |
ataggataataatattcttgagattgggttattggattatattggacatttatattgttgaataattgtggttgatgagggtaaggttgaaaagggttac |
17950116 |
T |
|
| Q |
263 |
ctcttgaattaccaatgttcagcggcgttgagtcttgaaagtttctcatggaagtagctactggaaacccagaaagattactttgtgaattgttaacaag |
362 |
Q |
| |
|
|| ||||||||||| ||||| |||| |||||||||||||||||| ||| || | |||| || | ||||||| | |||||||||||||| || |
|
|
| T |
17950117 |
cttatgaattaccaaagttca---tatttgactcttgaaagtttctcatgaaagcagaaattggagactcgtcaagattattctgtgaattgttaactag |
17950213 |
T |
|
| Q |
363 |
aagaggac |
370 |
Q |
| |
|
| |||||| |
|
|
| T |
17950214 |
aggaggac |
17950221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 163 - 370
Target Start/End: Original strand, 17953869 - 17954073
Alignment:
| Q |
163 |
ataggataataatgttcttgagattgaaatattggatgattttgaacatttgtattgttcaaggcttgtaattgaggagggtaaggttggaactggttac |
262 |
Q |
| |
|
||||||||||||| |||||||||||| |||||||| || ||| |||||| ||||||| || |||| |||| ||||||||||||| || |||||| |
|
|
| T |
17953869 |
ataggataataatattcttgagattgggttattggattatattggacatttatattgttgaataattgtggttgatgagggtaaggttgaaaagggttac |
17953968 |
T |
|
| Q |
263 |
ctcttgaattaccaatgttcagcggcgttgagtcttgaaagtttctcatggaagtagctactggaaacccagaaagattactttgtgaattgttaacaag |
362 |
Q |
| |
|
|| ||||||||||| ||||| |||| |||||||||||||||||| ||| || | |||| || | ||||||| | |||||||||||||| || |
|
|
| T |
17953969 |
cttatgaattaccaaagttca---tatttgactcttgaaagtttctcatgaaagcagaaattggagactcgtcaagattattctgtgaattgttaactag |
17954065 |
T |
|
| Q |
363 |
aagaggac |
370 |
Q |
| |
|
| |||||| |
|
|
| T |
17954066 |
aggaggac |
17954073 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 402 - 489
Target Start/End: Complemental strand, 17631251 - 17631164
Alignment:
| Q |
402 |
tggaggcgaaaactgaaccggaaccggttgccttgatgcatttgattcatttcctgtaatgttcttaattaaactcttgaattcatct |
489 |
Q |
| |
|
||||| ||||| |||||| ||| | ||| ||||| |||||||||||| |||||| ||||||| || || |||||||||||||||||| |
|
|
| T |
17631251 |
tggagccgaaacctgaactggatctggtggccttaatgcatttgatttatttcccgtaatgtgctgaacaaaactcttgaattcatct |
17631164 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 27 - 110
Target Start/End: Complemental strand, 17632157 - 17632074
Alignment:
| Q |
27 |
agttggattggtagcatgaaaagacgttgaaagattggacacatttgtttgtgttgaagggaagcctttcacaagttggttact |
110 |
Q |
| |
|
||||||||||||||||| | |||| |||| |||| |||| |||| |||||||||||||||| || ||||||| ||||||||| |
|
|
| T |
17632157 |
agttggattggtagcattcagagacactgaaggattagacatatttatttgtgttgaagggaaaccattcacaacttggttact |
17632074 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 216 - 312
Target Start/End: Original strand, 29880324 - 29880417
Alignment:
| Q |
216 |
attgttcaaggcttgtaattgaggagggtaaggttggaactggttacctcttgaattaccaatgttcagcggcgttgagtcttgaaagtttctcatg |
312 |
Q |
| |
|
||||||||| ||||| ||||||||||||||| || || |||||||||||||||||| ||| ||||| |||||||| |||||| ||||||||| |
|
|
| T |
29880324 |
attgttcaatacttgtgattgaggagggtaagactgaaattggttacctcttgaattatcaaagttca---tcgttgagttttgaaaatttctcatg |
29880417 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 167 - 398
Target Start/End: Complemental strand, 18766690 - 18766462
Alignment:
| Q |
167 |
gataataatgttcttgagattgaaatattggatgattttgaacatttgtattgttcaaggcttgtaattgaggagggtaaggttggaactggttacctct |
266 |
Q |
| |
|
||||||||| |||||||||||| |||||| |||| ||| |||||| ||||||| || |||| |||| ||||||||||||| || ||||||| |
|
|
| T |
18766690 |
gataataatattcttgagattgggttattggctgatattggacatttatattgttgaataattgtggttgatgagggtaaggttgaaaaatgttaccttc |
18766591 |
T |
|
| Q |
267 |
tgaattaccaatgttcagcggcgttgagtcttgaaagtttctcatggaagtagctactggaaacccagaaagattactttgtgaattgttaacaagaaga |
366 |
Q |
| |
|
||||||||||| ||||| |||| ||||||||||||||||| ||| || | || | || || | |||||| ||| |||||||||||| ||| || |
|
|
| T |
18766590 |
tgaattaccaaagttca---tatttgactcttgaaagtttctcataaaagcagaaattgaagactcatagagattattttatgaattgttaactagagga |
18766494 |
T |
|
| Q |
367 |
ggaccataaataggatgcacatgatgtcttgg |
398 |
Q |
| |
|
|||||| || || ||||||||||||||||| |
|
|
| T |
18766493 |
ggaccagtaacagactgcacatgatgtcttgg |
18766462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 135 - 271
Target Start/End: Complemental strand, 17632094 - 17631958
Alignment:
| Q |
135 |
accattcacaagttggctactatgattgataggataataatgttcttgagattgaaatattggatgattttgaacatttgtattgttcaaggcttgtaat |
234 |
Q |
| |
|
||||||||||| |||| ||||| ||| | ||||| |||| ||| |||||||||| |||||| |||| |||| ||||| | ||||| || ||||| | |
|
|
| T |
17632094 |
accattcacaacttggttactaccattcagaggatcgtaatattcatgagattgaattattggctgatattgagcatttatgttgttgaatacttgtggt |
17631995 |
T |
|
| Q |
235 |
tgaggagggtaaggttggaactggttacctcttgaat |
271 |
Q |
| |
|
|||| ||||||| |||| ||| ||||| ||||||||| |
|
|
| T |
17631994 |
tgagcagggtaaagttgaaacgggttaactcttgaat |
17631958 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 165 - 271
Target Start/End: Original strand, 16480719 - 16480825
Alignment:
| Q |
165 |
aggataataatgttcttgagattgaaatattggatgattttgaacatttgtattgttcaaggcttgtaattgaggagggtaaggttggaactggttacct |
264 |
Q |
| |
|
||||||||||| ||| |||||||| | |||||| |||| ||| ||||| ||||||| || ||||| |||||||||| || ||| || ||||||||| |
|
|
| T |
16480719 |
aggataataatattcctgagattggattattggctgatattgcgcatttatattgttgaatacttgtggttgaggagggcaaacttgaaattggttacct |
16480818 |
T |
|
| Q |
265 |
cttgaat |
271 |
Q |
| |
|
||||||| |
|
|
| T |
16480819 |
cttgaat |
16480825 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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