View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2247_low_7 (Length: 425)

Name: NF2247_low_7
Description: NF2247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2247_low_7
NF2247_low_7
[»] chr4 (17 HSPs)
chr4 (208-415)||(20449110-20449317)
chr4 (272-415)||(20438143-20438286)
chr4 (19-143)||(20449382-20449506)
chr4 (73-143)||(20438748-20438818)
chr4 (23-134)||(20442597-20442708)
chr4 (19-143)||(20430164-20430286)
chr4 (277-341)||(20277426-20277490)
chr4 (25-143)||(20475190-20475304)
chr4 (73-143)||(20277665-20277734)
chr4 (277-341)||(20460483-20460547)
chr4 (365-415)||(20460430-20460480)
chr4 (364-410)||(20474709-20474755)
chr4 (21-61)||(20461055-20461095)
chr4 (19-54)||(20277737-20277772)
chr4 (19-52)||(20438823-20438856)
chr4 (102-143)||(20460944-20460985)
chr4 (208-264)||(20277544-20277600)
[»] chr3 (1 HSPs)
chr3 (287-341)||(283511-283565)


Alignment Details
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 208 - 415
Target Start/End: Complemental strand, 20449317 - 20449110
Alignment:
Q  208 caatattggtcacaggatattaattcagctgaagatcagttagatgccttcaaggatattaaagatctattttctgagctgttcttgcacaataaataaa 307  Q
    |||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  20449317 caatattggtcacaggatattaattcagttgaagatcagttggatgccttcaaggatattaaagatctcttttctgagctgttcttgcacaataaataaa 20449218  T
Q  308 ttgaagtcatcaaagcttagtgagtgagttttaacttataatgtgcatatccatagtgaaggagtgttatattgcaatgtgaagttgattggaattgatg 407  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20449217 tttaagtcatcaaagcttagtgagtgagttttaacttataatgtgcatatccatagtgaaggagtgttatattgcaatgtgaagttgattggaattgatg 20449118  T
Q  408 cccctatg 415  Q
    ||||||||    
T  20449117 cccctatg 20449110  T

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Target: chr4; HSP #2
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 272 - 415
Target Start/End: Complemental strand, 20438286 - 20438143
Alignment:
Q  272 atctattttctgagctgttcttgcacaataaataaattgaagtcatcaaagcttagtgagtgagttttaacttataatgtgcatatccatagtgaaggag 371  Q
    |||| |||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20438286 atctcttttctaagctgttcttgcacaataaataaatttaagtcatcaaagcttagtgagtgagttttaacttataatgtgcatatccatagtgaaggag 20438187  T
Q  372 tgttatattgcaatgtgaagttgattggaattgatgcccctatg 415  Q
    ||||||||||||||||||||||||||||||| ||||||||||||    
T  20438186 tgttatattgcaatgtgaagttgattggaatggatgcccctatg 20438143  T

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Target: chr4; HSP #3
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 19 - 143
Target Start/End: Complemental strand, 20449506 - 20449382
Alignment:
Q  19 cgaccatcaacacaactttatatctcttgaatttatatgtatactattacatctgtggttgagaataagactgtttttcttaaaataagtaaattatatc 118  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||    
T  20449506 cgaccatcaacacaactttatatctcttgaatttatatatatactattacatttgtggttgagaataagattgtttttcttaaaataagtaaattatatc 20449407  T
Q  119 ctcttaaaatttttaaatatattaa 143  Q
    |||||||||||||||||||||||||    
T  20449406 ctcttaaaatttttaaatatattaa 20449382  T

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Target: chr4; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 73 - 143
Target Start/End: Complemental strand, 20438818 - 20438748
Alignment:
Q  73 gtggttgagaataagactgtttttcttaaaataagtaaattatatcctcttaaaatttttaaatatattaa 143  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||    
T  20438818 gtggttgagaataagactgtttttcttaaaataagtaaattatatcctcttaaattttttgaatatattaa 20438748  T

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Target: chr4; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 23 - 134
Target Start/End: Complemental strand, 20442708 - 20442597
Alignment:
Q  23 catcaacacaactttatatctcttgaatttatatgtatactattacatctgtggttgagaataagactgtttttcttaaaataagtaaattatatcctct 122  Q
    |||||||||| |||||||| |||||||||||||| ||||| |||||||  |||||||||||||||| ||||||| ||||||||| || |||||||||| |    
T  20442708 catcaacacagctttatatgtcttgaatttatatatatacaattacattcgtggttgagaataagagtgtttttgttaaaataaatagattatatccttt 20442609  T
Q  123 taaaatttttaa 134  Q
     ||| |||||||    
T  20442608 caaattttttaa 20442597  T

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Target: chr4; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 19 - 143
Target Start/End: Complemental strand, 20430286 - 20430164
Alignment:
Q  19 cgaccatcaacacaactttatatctcttgaatttatatgtatactattacatctgtggttgagaataagactgtttttcttaaaataagtaaattatatc 118  Q
    |||||||||||| | |||||| |||  ||||||||||| | ||| |||||||  |||||||||||||||||||||||| ||||||||| |||||||||||    
T  20430286 cgaccatcaacaaagctttatgtct--tgaatttatatatgtacaattacattcgtggttgagaataagactgtttttgttaaaataaataaattatatc 20430189  T
Q  119 ctcttaaaatttttaaatatattaa 143  Q
    |||| ||| ||||||| || |||||    
T  20430188 ctctcaaattttttaattacattaa 20430164  T

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Target: chr4; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 277 - 341
Target Start/End: Complemental strand, 20277490 - 20277426
Alignment:
Q  277 ttttctgagctgttcttgcacaataaataaattgaagtcatcaaagcttagtgagtgagttttaa 341  Q
    |||| |||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||    
T  20277490 ttttttgagctgttcttgcccaataaataaatttaagtcatcaaagcttagtgagtgagttttaa 20277426  T

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Target: chr4; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 25 - 143
Target Start/End: Complemental strand, 20475304 - 20475190
Alignment:
Q  25 tcaacacaactttatatctcttgaatttatatgtatactattacatctgtggttgagaataagactgtttttcttaaaataagtaaattatatcctctta 124  Q
    |||||||||||||||||||||||| ||| |||  ||||||||||||  |||||||||||||||||  ||||||||||||||  |||||| | | ||||||    
T  20475304 tcaacacaactttatatctcttgactttgtat--atactattacattcgtggttgagaataagac--tttttcttaaaatatataaattttttgctctta 20475209  T
Q  125 aaatttttaaatatattaa 143  Q
    || ||||||| ||||||||    
T  20475208 aattttttaattatattaa 20475190  T

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Target: chr4; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 73 - 143
Target Start/End: Complemental strand, 20277734 - 20277665
Alignment:
Q  73 gtggttgagaataagactgtttttcttaaaataagtaaattatatcctcttaaaatttttaaatatattaa 143  Q
    |||||||||||||||||| ||||| |||||||||||||||||||||||||| || ||||||||||||||||    
T  20277734 gtggttgagaataagactcttttttttaaaataagtaaattatatcctctt-aagtttttaaatatattaa 20277665  T

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Target: chr4; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 277 - 341
Target Start/End: Complemental strand, 20460547 - 20460483
Alignment:
Q  277 ttttctgagctgttcttgcacaataaataaattgaagtcatcaaagcttagtgagtgagttttaa 341  Q
    |||| |||||||||||||| ||||||| | ||| |||||||||||||||||||||||||||||||    
T  20460547 ttttttgagctgttcttgcccaataaaaatatttaagtcatcaaagcttagtgagtgagttttaa 20460483  T

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Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 365 - 415
Target Start/End: Complemental strand, 20460480 - 20460430
Alignment:
Q  365 gaaggagtgttatattgcaatgtgaagttgattggaattgatgcccctatg 415  Q
    ||||| |||||||||| ||||||||||||||||||||||||||||||||||    
T  20460480 gaaggcgtgttatattccaatgtgaagttgattggaattgatgcccctatg 20460430  T

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Target: chr4; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 364 - 410
Target Start/End: Complemental strand, 20474755 - 20474709
Alignment:
Q  364 tgaaggagtgttatattgcaatgtgaagttgattggaattgatgccc 410  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||    
T  20474755 tgaaggagtgttatattgcaatgtgaagttgatttgaattgatgccc 20474709  T

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Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 21 - 61
Target Start/End: Complemental strand, 20461095 - 20461055
Alignment:
Q  21 accatcaacacaactttatatctcttgaatttatatgtata 61  Q
    |||||||||||||||||||||||||||||||||||| ||||    
T  20461095 accatcaacacaactttatatctcttgaatttatatatata 20461055  T

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Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 19 - 54
Target Start/End: Complemental strand, 20277772 - 20277737
Alignment:
Q  19 cgaccatcaacacaactttatatctcttgaatttat 54  Q
    ||||||||||||||||||||||||||||||||||||    
T  20277772 cgaccatcaacacaactttatatctcttgaatttat 20277737  T

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Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 52
Target Start/End: Complemental strand, 20438856 - 20438823
Alignment:
Q  19 cgaccatcaacacaactttatatctcttgaattt 52  Q
    |||||||||||||||||||||||||| |||||||    
T  20438856 cgaccatcaacacaactttatatctcctgaattt 20438823  T

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Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 143
Target Start/End: Complemental strand, 20460985 - 20460944
Alignment:
Q  102 aataagtaaattatatcctcttaaaatttttaaatatattaa 143  Q
    ||||| ||||||||||||||||||| ||||||| ||||||||    
T  20460985 aataaataaattatatcctcttaaattttttaattatattaa 20460944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 208 - 264
Target Start/End: Complemental strand, 20277600 - 20277544
Alignment:
Q  208 caatattggtcacaggatattaattcagctgaagatcagttagatgccttcaaggat 264  Q
    ||||||| || ||||||||||||||||  |||||||||  | |||||||||||||||    
T  20277600 caatatttgttacaggatattaattcaattgaagatcatatggatgccttcaaggat 20277544  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 287 - 341
Target Start/End: Complemental strand, 283565 - 283511
Alignment:
Q  287 tgttcttgcacaataaataaattgaagtcatcaaagcttagtgagtgagttttaa 341  Q
    ||||||| | ||||| ||||||| ||||||||||||||| |||||||||||||||    
T  283565 tgttcttacccaatagataaatttaagtcatcaaagctttgtgagtgagttttaa 283511  T

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