View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2248_high_1 (Length: 571)
Name: NF2248_high_1
Description: NF2248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2248_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 518; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 518; E-Value: 0
Query Start/End: Original strand, 17 - 558
Target Start/End: Original strand, 14927672 - 14928212
Alignment:
| Q |
17 |
cagatccatatcttcatattgcatcctcaattcatcaaccatctgaattttggaaggtcttgagtaaattgcaggcttttgatgttggaaattttcattt |
116 |
Q |
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| T |
14927672 |
cagatccatatcttcatattgcatcctcaattcatcaaccatctgaattttggaaggtcttgagtaaattgcaggcttttgatgttggaaattttcattt |
14927771 |
T |
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| Q |
117 |
ggcattatggaactgacactcttatatttcagttagacgactcagttctcaaaacaattgaatgttcttccaatcatgaactggaggaatccagaaagtt |
216 |
Q |
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| T |
14927772 |
ggcattatggaactgacactcttatatttcagttagacgactcagttctcaaaacaattgaatgttcttccaatcatgaactggaggaatccagaaagtt |
14927871 |
T |
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| Q |
217 |
ggttctacgcattcgcagaagggatctataccaggtcagccatacagtgaagtacctgataaatttttgacctattcttattttggtgacactatttctg |
316 |
Q |
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| T |
14927872 |
ggttctacgcattcgcagaagggatctataccaggtcagccatacagtgaagtaactgataaatttttgacctattcttattttggtgacactatttctg |
14927971 |
T |
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| Q |
317 |
ataggtagagagaatttaatatttgtgcagacagtaatgataatacataaataccatgtgctgacaaattgacacaaacatttactccattttgtagtta |
416 |
Q |
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| T |
14927972 |
ataggtagagagaatttaatatttgtgcaaacagtaatgat-atacataaataccatgtgctgacaaattgacacaaacatttactccattttgtagtta |
14928070 |
T |
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| Q |
417 |
tgcaatgaattttctgttccaaaggaaaaactagacaacttcaaaagcatcacaccccaagacattgtttgttcccaggttgaaaaaactatagtaataa |
516 |
Q |
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| T |
14928071 |
tgcaatgaattttctgttccaaaggaaaaactagacaacttcaaaagcatcacaccccaagacattgtctgttcccaggttgaaaaaactatagtaataa |
14928170 |
T |
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| Q |
517 |
gtgtccttttcattcagtatatgtacatgcctgcctatcttc |
558 |
Q |
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| T |
14928171 |
gtgtccttttcattcagcatatgtacatgcctgcctatcttc |
14928212 |
T |
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