View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2248_high_3 (Length: 239)
Name: NF2248_high_3
Description: NF2248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2248_high_3 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 20 - 239
Target Start/End: Original strand, 45128754 - 45128973
Alignment:
| Q |
20 |
ttgtcgtgttagtgcttcaaattccagtagtgaagtgatggaaaagcatgagaagagagagggtacaagagaagacactcacttgaggttgaggagaaat |
119 |
Q |
| |
|
|||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45128754 |
ttgtcgtgttagcgcttcaaattccagaagtgaagtgatggaaaagcatgagaagagagagggtacaagagaagacactcacttgaggttgaggagaaat |
45128853 |
T |
|
| Q |
120 |
aaccttggattgtgacagcacagaggaaatgcaaacatcaagagtgacatcatatttgtccacaaatctactagtttctttactcaccaatcccataacc |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45128854 |
aaccttggattgtgacagcacagaggaaatgcaaacatcaagagtgacatcatatttgtccacaaatctactagtttctttactcaccaatcccataacc |
45128953 |
T |
|
| Q |
220 |
tttgaacaaagaggtgaaac |
239 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
45128954 |
tttgaacaaagaggtgaaac |
45128973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 108 - 185
Target Start/End: Original strand, 40280697 - 40280774
Alignment:
| Q |
108 |
ttgaggagaaataaccttggattgtgacagcacagaggaaatgcaaacatcaagagtgacatcatatttgtccacaaa |
185 |
Q |
| |
|
||||||| ||||||| ||||||||||| ||||| ||||||||||| |||||||| || |||||||||||||||||||| |
|
|
| T |
40280697 |
ttgaggacaaataactttggattgtgaaagcactgaggaaatgcatacatcaagggtaacatcatatttgtccacaaa |
40280774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 138 - 203
Target Start/End: Original strand, 6632101 - 6632166
Alignment:
| Q |
138 |
cacagaggaaatgcaaacatcaagagtgacatcatatttgtccacaaatctactagtttctttact |
203 |
Q |
| |
|
|||||| || || ||||||||||||||||||||||| ||||| |||||||| || |||||| |||| |
|
|
| T |
6632101 |
cacagaagatatacaaacatcaagagtgacatcatacttgtcaacaaatctgcttgtttctgtact |
6632166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University