View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2248_high_4 (Length: 237)
Name: NF2248_high_4
Description: NF2248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2248_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 16 - 227
Target Start/End: Original strand, 13885963 - 13886174
Alignment:
| Q |
16 |
agtactacttatttctaatcataccagggaaggtaagaagatcaggatctccaatgtaaaagtcaaacttgtctttatctttgtcaaagataagtctctc |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13885963 |
agtactacttatttctaatcataccagggaaggtaagaagatcaggatctccaatgtaaaagtcaaacttgtctttatctttgtcaaagataagtctctc |
13886062 |
T |
|
| Q |
116 |
atcttcattgctcctcaatatgatgaagtaagggactcttatatatggaggatcattgataggatcaacaaaaattggaacacctaatgaatttacacca |
215 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13886063 |
atcttcattgctcctcagtatgatgaagtaagggactcttatatatggaggatcattgataggatcaacaaaaattggaacacctaatgaatttacacca |
13886162 |
T |
|
| Q |
216 |
ttcttattcttc |
227 |
Q |
| |
|
|||||||||||| |
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|
| T |
13886163 |
ttcttattcttc |
13886174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 16 - 227
Target Start/End: Original strand, 14026088 - 14026299
Alignment:
| Q |
16 |
agtactacttatttctaatcataccagggaaggtaagaagatcaggatctccaatgtaaaagtcaaacttgtctttatctttgtcaaagataagtctctc |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14026088 |
agtactacttatttctaatcataccagggaaggtaagaagatcaggatctccaatgtaaaagtcaaacttgtctttatctttgtcaaagataagtctctc |
14026187 |
T |
|
| Q |
116 |
atcttcattgctcctcaatatgatgaagtaagggactcttatatatggaggatcattgataggatcaacaaaaattggaacacctaatgaatttacacca |
215 |
Q |
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|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14026188 |
atcttcattgctcctcagtatgatgaagtaagggactcttatatatggaggatcattgataggatcaacaaaaattggaacacctaatgaatttacacca |
14026287 |
T |
|
| Q |
216 |
ttcttattcttc |
227 |
Q |
| |
|
|||||||||||| |
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| T |
14026288 |
ttcttattcttc |
14026299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 26 - 226
Target Start/End: Original strand, 7685962 - 7686162
Alignment:
| Q |
26 |
atttctaatcataccagggaaggtaagaagatcaggatctccaatgtaaaagtcaaacttgtctttatctttgtcaaagataagtctctcatcttcattg |
125 |
Q |
| |
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|||| ||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || || |
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| T |
7685962 |
atttgtaatcgtaccagggaaggtaagaagatcaggatctccaacgtaaaagtcaaacttgtctttatctttgtcaaagataagtctctcatcctcgtta |
7686061 |
T |
|
| Q |
126 |
ctcctcaatatgatgaagtaagggactcttatatatggaggatcattgataggatcaacaaaaattggaacacctaatgaatttacaccattcttattct |
225 |
Q |
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||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||| |
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| T |
7686062 |
ctcctcaatatgatgaagtaagggattcttatatatggaagatcattgataggatcaacgaaaattggaacgcccaatgaatttacaccattcttattct |
7686161 |
T |
|
| Q |
226 |
t |
226 |
Q |
| |
|
| |
|
|
| T |
7686162 |
t |
7686162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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