View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2248_low_3 (Length: 331)

Name: NF2248_low_3
Description: NF2248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2248_low_3
NF2248_low_3
[»] chr4 (10 HSPs)
chr4 (106-315)||(27923777-27923986)
chr4 (1-60)||(27924031-27924090)
chr4 (1-63)||(779743-779805)
chr4 (1-63)||(16467894-16467955)
chr4 (3-63)||(52708540-52708600)
chr4 (1-63)||(38179842-38179904)
chr4 (3-60)||(35803553-35803610)
chr4 (1-63)||(32004420-32004482)
chr4 (109-141)||(11086378-11086410)
chr4 (5-57)||(46737258-46737310)
[»] chr6 (3 HSPs)
chr6 (2-62)||(9062900-9062960)
chr6 (1-63)||(8307914-8307976)
chr6 (1-63)||(23898803-23898865)
[»] chr5 (2 HSPs)
chr5 (1-61)||(40197666-40197726)
chr5 (1-63)||(39075006-39075068)
[»] chr8 (4 HSPs)
chr8 (2-63)||(11517613-11517674)
chr8 (1-61)||(45120971-45121031)
chr8 (107-155)||(45121066-45121114)
chr8 (1-54)||(21575451-21575504)
[»] chr7 (3 HSPs)
chr7 (1-63)||(10701649-10701711)
chr7 (1-63)||(10980660-10980722)
chr7 (1-63)||(28749924-28749986)
[»] chr3 (5 HSPs)
chr3 (2-63)||(11083223-11083284)
chr3 (1-63)||(45745514-45745576)
chr3 (1-63)||(51672516-51672578)
chr3 (107-155)||(11083322-11083370)
chr3 (109-141)||(32375196-32375228)
[»] chr1 (5 HSPs)
chr1 (1-63)||(24084152-24084214)
chr1 (1-63)||(27858741-27858803)
chr1 (109-141)||(1905714-1905746)
chr1 (109-141)||(8772363-8772395)
chr1 (109-141)||(44603734-44603766)
[»] scaffold0024 (1 HSPs)
scaffold0024 (7-63)||(36255-36311)


Alignment Details
Target: chr4 (Bit Score: 166; Significance: 8e-89; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 106 - 315
Target Start/End: Complemental strand, 27923986 - 27923777
Alignment:
Q  106 gacatccttaaccattgcccttagggcaccggttagttaaaccctaaaaactaacatttaagaagataaagttgcttatatgatatgccgatttctcaaa 205  Q
    ||||||||||||||||| ||||||| ||| | |||| |||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27923986 gacatccttaaccattgtccttaggacactgattagctaaactaaaaaaactaacatttaagaagataaagttgcttatatgatatgccgatttctcaaa 27923887  T
Q  206 tccctaggattataacatgcaccaaaaagtgattacttccatgcagaagaagttttgctcttcctcaaagtagatagacatcatgcacgaacaaggaagg 305  Q
    |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  27923886 tccctaggattataacatgcaccaaaaagtgagtacttccatgctgaagaagttttgctcttcctcaaagtagatagacatcatgcacaaacaaggaagg 27923787  T
Q  306 tcgaccatgc 315  Q
    ||||||||||    
T  27923786 tcgaccatgc 27923777  T

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Target: chr4; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 27924090 - 27924031
Alignment:
Q  1 gattaatatagaaattatgcattggaaattagtagaaagttgaatgtttaactttataaa 60  Q
    |||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||    
T  27924090 gattaatatagaaattatgcattggaaattggtggaaagttgaatgtttaactttataaa 27924031  T

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Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 779743 - 779805
Alignment:
Q  1 gattaatatagaaattatgcattggaaattagtagaaagttgaatgtttaactttataaaagt 63  Q
    ||||||||||||||||||||||| |||||| ||  |||||||||||||||||||||| |||||    
T  779743 gattaatatagaaattatgcatttgaaattggtgaaaagttgaatgtttaactttatgaaagt 779805  T

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Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 16467955 - 16467894
Alignment:
Q  1 gattaatatagaaattatgcattggaaattagtagaaagttgaatgtttaactttataaaagt 63  Q
    |||||||||||||||||||||||||||||| |  ||||||||||||||||||||||| |||||    
T  16467955 gattaatatagaaattatgcattggaaatt-gatgaaagttgaatgtttaactttatgaaagt 16467894  T

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Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 3 - 63
Target Start/End: Complemental strand, 52708600 - 52708540
Alignment:
Q  3 ttaatatagaaattatgcattggaaattagtagaaagttgaatgtttaactttataaaagt 63  Q
    |||||||||||||| | ||||| ||||||||  |||||||||||||||||||||| |||||    
T  52708600 ttaatatagaaattgtacattgaaaattagtgaaaagttgaatgtttaactttatgaaagt 52708540  T

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Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 38179842 - 38179904
Alignment:
Q  1 gattaatatagaaattatgcattggaaattagtagaaagttgaatgtttaactttataaaagt 63  Q
    ||||||||||||||||||| ||| ||||||  |  |||||||||||||||||||||| |||||    
T  38179842 gattaatatagaaattatgtattagaaatttatgaaaagttgaatgtttaactttatgaaagt 38179904  T

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Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 3 - 60
Target Start/End: Complemental strand, 35803610 - 35803553
Alignment:
Q  3 ttaatatagaaattatgcattggaaattagtagaaagttgaatgtttaactttataaa 60  Q
    |||||||||||||||||||||| ||||| ||| |||||  ||| ||||||||||||||    
T  35803610 ttaatatagaaattatgcattgaaaattggtaaaaagtgaaatatttaactttataaa 35803553  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 32004420 - 32004482
Alignment:
Q  1 gattaatatagaaattatgcattggaaattagtagaaagttgaatgtttaactttataaaagt 63  Q
    |||||||||||||||||||||||  ||||| |   ||||| |||||||||||||||| |||||    
T  32004420 gattaatatagaaattatgcatttaaaattggggaaaagtggaatgtttaactttatgaaagt 32004482  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 109 - 141
Target Start/End: Original strand, 11086378 - 11086410
Alignment:
Q  109 atccttaaccattgcccttagggcaccggttag 141  Q
    |||||||||||||||||||||||||| ||||||    
T  11086378 atccttaaccattgcccttagggcactggttag 11086410  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 57
Target Start/End: Original strand, 46737258 - 46737310
Alignment:
Q  5 aatatagaaattatgcattggaaattagtagaaagttgaatgtttaactttat 57  Q
    |||||||||||| |||||||||||||  |  ||||| ||||||||||||||||    
T  46737258 aatatagaaattctgcattggaaattgatgaaaagtggaatgtttaactttat 46737310  T

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Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 2 - 62
Target Start/End: Complemental strand, 9062960 - 9062900
Alignment:
Q  2 attaatatagaaattatgcattggaaattagtagaaagttgaatgtttaactttataaaag 62  Q
    ||||||||||||||||||||||||||||| ||  |||||||||||||||||||||| ||||    
T  9062960 attaatatagaaattatgcattggaaattggtgaaaagttgaatgtttaactttatgaaag 9062900  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 8307914 - 8307976
Alignment:
Q  1 gattaatatagaaattatgcattggaaattagtagaaagttgaatgtttaactttataaaagt 63  Q
    ||||||||||||||||||||||||||||||  |  ||||| |||||||| | |||||||||||    
T  8307914 gattaatatagaaattatgcattggaaattgatgaaaagtggaatgtttgattttataaaagt 8307976  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 23898865 - 23898803
Alignment:
Q  1 gattaatatagaaattatgcattggaaattagtagaaagttgaatgtttaactttataaaagt 63  Q
    |||||| |||||||||||| ||||||||||  | |||||| |||||||||||||||| |||||    
T  23898865 gattaacatagaaattatgtattggaaattgatggaaagtggaatgtttaactttatgaaagt 23898803  T

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Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 40197726 - 40197666
Alignment:
Q  1 gattaatatagaaattatgcattggaaattagtagaaagttgaatgtttaactttataaaa 61  Q
    |||||||||||||||||||||||||||||||||  ||||| |||||||||| |||||||||    
T  40197726 gattaatatagaaattatgcattggaaattagtgaaaagtggaatgtttaattttataaaa 40197666  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 39075006 - 39075068
Alignment:
Q  1 gattaatatagaaattatgcattggaaattagtagaaagttgaatgtttaactttataaaagt 63  Q
    |||||||||||||||||||||||| |||||  || || || ||||||||||||||||||||||    
T  39075006 gattaatatagaaattatgcattgaaaattgataaaaggtggaatgtttaactttataaaagt 39075068  T

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Target: chr8 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 2 - 63
Target Start/End: Complemental strand, 11517674 - 11517613
Alignment:
Q  2 attaatatagaaattatgcattggaaattagtagaaagttgaatgtttaactttataaaagt 63  Q
    ||||||||| ||||||||||||||||||| ||| ||||| |||||||||||||||| |||||    
T  11517674 attaatataaaaattatgcattggaaattggtaaaaagtagaatgtttaactttatgaaagt 11517613  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 45120971 - 45121031
Alignment:
Q  1 gattaatatagaaattatgcattggaaattagtagaaagttgaatgtttaactttataaaa 61  Q
    |||||||||||||||||||||| |||| || ||  ||||| |||| |||||||||||||||    
T  45120971 gattaatatagaaattatgcatcggaagttggtgaaaagtggaatatttaactttataaaa 45121031  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 107 - 155
Target Start/End: Original strand, 45121066 - 45121114
Alignment:
Q  107 acatccttaaccattgcccttagggcaccggttagttaaaccctaaaaa 155  Q
    |||||||||||||||||||||||||||  ||||||  ||||||||||||    
T  45121066 acatccttaaccattgcccttagggcattggttagcaaaaccctaaaaa 45121114  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 21575451 - 21575504
Alignment:
Q  1 gattaatatagaaattatgcattggaaattagtagaaagttgaatgtttaactt 54  Q
    |||||||||||||||||| ||||||||||| ||  ||| | |||||||||||||    
T  21575451 gattaatatagaaattatacattggaaattggttaaaaatagaatgtttaactt 21575504  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 10701649 - 10701711
Alignment:
Q  1 gattaatatagaaattatgcattggaaattagtagaaagttgaatgtttaactttataaaagt 63  Q
    ||||||||||||||||||  ||| |||||||||  |||||||||||||||| |||||||||||    
T  10701649 gattaatatagaaattatatattagaaattagtgaaaagttgaatgtttaagtttataaaagt 10701711  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 10980660 - 10980722
Alignment:
Q  1 gattaatatagaaattatgcattggaaattagtagaaagttgaatgtttaactttataaaagt 63  Q
    |||||||||| |||||||| |||| ||||||||  ||||| ||||||||||||||||||||||    
T  10980660 gattaatatataaattatgtattgaaaattagtgaaaagtagaatgtttaactttataaaagt 10980722  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 28749924 - 28749986
Alignment:
Q  1 gattaatatagaaattatgcattggaaattagtagaaagttgaatgtttaactttataaaagt 63  Q
    ||||||||||||||||||||||||||||||  |  ||||| |||||||||||||||| |||||    
T  28749924 gattaatatagaaattatgcattggaaattgatgaaaagtagaatgtttaactttatgaaagt 28749986  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 63
Target Start/End: Original strand, 11083223 - 11083284
Alignment:
Q  2 attaatatagaaattatgcattggaaattagtagaaagttgaatgtttaactttataaaagt 63  Q
    |||||||||||||||||||| ||||||| |||  ||| | ||||||||||||||||||||||    
T  11083223 attaatatagaaattatgcaatggaaatgagtgaaaaatggaatgtttaactttataaaagt 11083284  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 45745514 - 45745576
Alignment:
Q  1 gattaatatagaaattatgcattggaaattagtagaaagttgaatgtttaactttataaaagt 63  Q
    |||||||||||||||||||||||| |||||  || ||| | |||||||||||||||| |||||    
T  45745514 gattaatatagaaattatgcattgaaaattgataaaaaatggaatgtttaactttatgaaagt 45745576  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 51672516 - 51672578
Alignment:
Q  1 gattaatatagaaattatgcattggaaattagtagaaagttgaatgtttaactttataaaagt 63  Q
    ||||||||||||||||||||||| |||||| ||  ||| |  ||||||||||||||| |||||    
T  51672516 gattaatatagaaattatgcattagaaattggtgaaaaatgaaatgtttaactttattaaagt 51672578  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 107 - 155
Target Start/End: Original strand, 11083322 - 11083370
Alignment:
Q  107 acatccttaaccattgcccttagggcaccggttagttaaaccctaaaaa 155  Q
    ||||| |||||||||||||||||||||| ||||||  |||||| |||||    
T  11083322 acatctttaaccattgcccttagggcactggttagaaaaacccaaaaaa 11083370  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 109 - 141
Target Start/End: Complemental strand, 32375228 - 32375196
Alignment:
Q  109 atccttaaccattgcccttagggcaccggttag 141  Q
    |||||||||||||||||||||||||| ||||||    
T  32375228 atccttaaccattgcccttagggcactggttag 32375196  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 24084152 - 24084214
Alignment:
Q  1 gattaatatagaaattatgcattggaaattagtagaaagttgaatgtttaactttataaaagt 63  Q
    |||||||||| |||||||| |||| |||||  || ||||| |||||||||||||||| |||||    
T  24084152 gattaatataaaaattatgtattgaaaattgataaaaagtggaatgtttaactttatgaaagt 24084214  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 27858803 - 27858741
Alignment:
Q  1 gattaatatagaaattatgcattggaaattagtagaaagttgaatgtttaactttataaaagt 63  Q
    |||||||||| ||||||||| ||| ||||| ||  |||||||||||||||| ||||| |||||    
T  27858803 gattaatataaaaattatgcgttgaaaattggtgaaaagttgaatgtttaagtttatgaaagt 27858741  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 109 - 141
Target Start/End: Complemental strand, 1905746 - 1905714
Alignment:
Q  109 atccttaaccattgcccttagggcaccggttag 141  Q
    |||||||||||||||||||||||||| ||||||    
T  1905746 atccttaaccattgcccttagggcactggttag 1905714  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 109 - 141
Target Start/End: Complemental strand, 8772395 - 8772363
Alignment:
Q  109 atccttaaccattgcccttagggcaccggttag 141  Q
    |||||||||||||||||||||||||| ||||||    
T  8772395 atccttaaccattgcccttagggcactggttag 8772363  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 109 - 141
Target Start/End: Original strand, 44603734 - 44603766
Alignment:
Q  109 atccttaaccattgcccttagggcaccggttag 141  Q
    |||||||||||||||||||||||||| ||||||    
T  44603734 atccttaaccattgcccttagggcactggttag 44603766  T

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Target: scaffold0024 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 7 - 63
Target Start/End: Original strand, 36255 - 36311
Alignment:
Q  7 tatagaaattatgcattggaaattagtagaaagttgaatgtttaactttataaaagt 63  Q
    |||||||||||||||||||||||  ||  ||| | |||||||||||||||| |||||    
T  36255 tatagaaattatgcattggaaatcggtgaaaaatggaatgtttaactttatgaaagt 36311  T

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