View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2249_high_3 (Length: 490)
Name: NF2249_high_3
Description: NF2249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2249_high_3 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 438; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 14 - 490
Target Start/End: Original strand, 43765130 - 43765607
Alignment:
| Q |
14 |
aggcaacaacttagcaagcaattaggacttgctcctaggcaagtcaaattttggttccaaaatcgtcgtacccaaatcaaggtattatttaaatcaacta |
113 |
Q |
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| T |
43765130 |
aggcaacaacttagcaagcaattaggacttgctcctaggcaagtcaaattttggttccaaaatcgtcgtacccaaatcaaggtattatttaaatcaacta |
43765229 |
T |
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| Q |
114 |
aataaaaattgtgctattttttgcattttaattattaggtgaacttaacaataatattaagcactacttgtgttgcattttttcaggcaatacaagagcg |
213 |
Q |
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| T |
43765230 |
aataaaaattgtgctattttttgcattttaattattaggtgaatttaacaataatattaagcactacttgtgttgcattttttcaggcaatacaagagcg |
43765329 |
T |
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| Q |
214 |
acatgaaaattccttgttgaaatcagaaatagagaaactaagggagaaaaataagaccctacgagagaccataaataaggcttgttgccccaattgtggg |
313 |
Q |
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| T |
43765330 |
acatgaaaattcattgttgaaatcagaaatagagaaactaagggagaaaaataagaccctacgagagaccataaataaggcttgttgccccaattgtggg |
43765429 |
T |
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| Q |
314 |
gtccccaccacaaatagagatggtaccatggcaactgaagaacaacaactacgtattgaaaatgccaaactcaaagctgaggttatgattagaattaact |
413 |
Q |
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| T |
43765430 |
gtccccaccacaaatagagatggtaccatggcaactgaagaacaacaactacgtattgaaaatgccaaactcaaagctgaggttatgattagaattaact |
43765529 |
T |
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| Q |
414 |
caaactatacaacatcactttttaattacactattgg-nnnnnnnnttatactagttagacaaattgtaaaccgaact |
490 |
Q |
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| T |
43765530 |
caaactatacaacatcactttttaattacactattggaaaaaaaaattatactagttagacaaattgtaaaccgaact |
43765607 |
T |
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