View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2249_high_4 (Length: 423)
Name: NF2249_high_4
Description: NF2249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2249_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 151 - 416
Target Start/End: Complemental strand, 37849759 - 37849494
Alignment:
| Q |
151 |
aaaaaatgttttcaattccaagtcacgtgaaataaatgaaatgcaacatgtttttccattcatatgcactattatgataaagatggtgacggtgtattgt |
250 |
Q |
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| T |
37849759 |
aaaaaatgttttcaattccaagtcacgtgaaataaatgaaatgcaacatgtttttccattcatatgcactattatgataaagatggtgacggtgtattgt |
37849660 |
T |
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| Q |
251 |
attaactatgttggtttttcagaacttttgttgcaccacttgagagacttaagctggaatacatagttcgtggtgaacagaagaatctttttgagctcat |
350 |
Q |
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| T |
37849659 |
attaacgatgttggtttttcagaacttttgttgcaccacttgagagacttaagctggaatacatagttcgtggtgaacagaagaatctttttgagctcat |
37849560 |
T |
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| Q |
351 |
tcagacaattgcaacatctcaaggtttgaaaggattttggaaaggaaattttgtgaatattcttcg |
416 |
Q |
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| T |
37849559 |
tcagacaattgcaacatctcaaggtttgaaaggattttggaaaggaaattttgtgaatattcttcg |
37849494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 37849909 - 37849830
Alignment:
| Q |
1 |
ctttgattcagaacatttatgtcctagattactcattattttgtttataatactcagccagtttactttaaggccatata |
80 |
Q |
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| T |
37849909 |
ctttgattcagaacatttatgtcctagattactcattattttgtttataatactcagccagtttactttaaggccatata |
37849830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 269 - 392
Target Start/End: Original strand, 33675286 - 33675409
Alignment:
| Q |
269 |
tcagaacttttgttgcaccacttgagagacttaagctggaatacatagttcgtggtgaacagaagaatctttttgagctcattcagacaattgcaacatc |
368 |
Q |
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| T |
33675286 |
tcagaacttgtgttgcaccacttgaaagacttaagctggaatatattgttcgtggtgagaagaggaatatctttgagcttataaagtcaattgctacaac |
33675385 |
T |
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| Q |
369 |
tcaaggtttgaaaggattttggaa |
392 |
Q |
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| T |
33675386 |
tcaagggttgagaggtttttggaa |
33675409 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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