View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2249_high_6 (Length: 331)
Name: NF2249_high_6
Description: NF2249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2249_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 15 - 319
Target Start/End: Complemental strand, 31949384 - 31949077
Alignment:
| Q |
15 |
gtggaggattgaagcaaggatacaccaattaaacaacatgcagatttctcaccaccatcagaaaaagatgtcgatttgcaaaaataattgtgatccaagc |
114 |
Q |
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| T |
31949384 |
gtggaggattgaagcaaggatacaccaattaaactccatgcagatttcttaccaccatcagaaaaagatgtcgatttgcaaaaataattgtgatccaagc |
31949285 |
T |
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| Q |
115 |
accacccaaaatcccattaaagctctttaaaaatgtccaaccgtcagtaaaataaaccctcccgttcttcnnnnnnncaatagctaccttagcctcattc |
214 |
Q |
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| T |
31949284 |
accacccaaaatcccattaaagctctttaaaaatgtccaaccatcagtaaaataaaccctcccgttcttc--tttttcaatagctaccttaacctcattc |
31949187 |
T |
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| Q |
215 |
tggttcggatcacgtaacaacacaaacgaagcaacttgtagaccaaaccctcttgcaaacgaagaaggaag-----ccttcccttacgctacacaaacac |
309 |
Q |
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| T |
31949186 |
tggttcggatcacgtaacaacacaaacgaagcaacttgtagaccaaaccctcttgcaaacgaagaaggaagccttcccttcccttacgctacacaaacac |
31949087 |
T |
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| Q |
310 |
tcatcagtga |
319 |
Q |
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| T |
31949086 |
tcatcagtga |
31949077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 273
Target Start/End: Original strand, 42091905 - 42091970
Alignment:
| Q |
208 |
ctcattctggttcggatcacgtaacaacacaaacgaagcaacttgtagaccaaaccctcttgcaaa |
273 |
Q |
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| T |
42091905 |
ctcattctggtttggatcacgcaatatcacaaaaggaccaacttgcaaaccaaaccctcttgcaaa |
42091970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 73 - 168
Target Start/End: Original strand, 27510657 - 27510752
Alignment:
| Q |
73 |
cagaaaaagatgtcgatttgcaaaaataattgtgatccaagcaccacccaaaatcccattaaagctctttaaaaatgtccaaccgtcagtaaaata |
168 |
Q |
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| T |
27510657 |
cagaaaaaggtgtcgattttcaaaaatgacagtgatccaagtaccagccaaaagcccattaaaattctttaaaaatgtccaaccgtcagtaaaata |
27510752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 73 - 168
Target Start/End: Complemental strand, 39210332 - 39210238
Alignment:
| Q |
73 |
cagaaaaagatgtcgatttgcaaaaataattgtgatccaagcaccacccaaaatcccattaaagctctttaaaaatgtccaaccgtcagtaaaata |
168 |
Q |
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| T |
39210332 |
cagaaaaaggtgtcgatttgcaaaaatgacagtgatccaagtaccagccaaaagcacataaaat-tctttaaaaatgtccaaccgtcagtaaaata |
39210238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 73 - 131
Target Start/End: Original strand, 7673926 - 7673984
Alignment:
| Q |
73 |
cagaaaaagatgtcgatttgcaaaaataattgtgatccaagcaccacccaaaatcccat |
131 |
Q |
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|||||||| |||||||||| |||||||||||||| ||||| |||| |||||||||||| |
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| T |
7673926 |
cagaaaaatgtgtcgatttgaaaaaataattgtgacccaagtaccagccaaaatcccat |
7673984 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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