View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2249_low_10 (Length: 316)
Name: NF2249_low_10
Description: NF2249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2249_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 142; Significance: 2e-74; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 16 - 161
Target Start/End: Complemental strand, 32699009 - 32698864
Alignment:
| Q |
16 |
aaattttaattcataaatctggatctacatttctaacacacacatccattttcctcaaaactacaccaatccaagcttcaacctttcttcttcaagctaa |
115 |
Q |
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| T |
32699009 |
aaattttaattcataaatctggatctacatttctaacacacacatccatcttcctcaaaactacaccaatccaagcttcaacctttcttcttcaagctaa |
32698910 |
T |
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| Q |
116 |
actcaatttaacacagcaaattcatcccaaacctacatgtttgttg |
161 |
Q |
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| T |
32698909 |
actcaatttaacacagcaaattcatcccaaacctacatgtttgttg |
32698864 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 266 - 300
Target Start/End: Complemental strand, 32698759 - 32698725
Alignment:
| Q |
266 |
aatcgaatttctagaaaacaaaattatgggaaaac |
300 |
Q |
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| T |
32698759 |
aatcgaatttctagaaaacaaaattatgggaaaac |
32698725 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 115; Significance: 2e-58; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 15 - 161
Target Start/End: Complemental strand, 5611185 - 5611040
Alignment:
| Q |
15 |
caaattttaattcataaatctggatctacatttctaacacacacatccattttcctcaaaactacaccaatccaagcttcaacctttcttcttcaagcta |
114 |
Q |
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| T |
5611185 |
caaattttaattcacaaatttggatctacatttctaacacacacatc-atcttcctcaaaaccacaccaatctaagcttcaacctttcttcttcaagcta |
5611087 |
T |
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| Q |
115 |
aactcaatttaacacagcaaattcatcccaaacctacatgtttgttg |
161 |
Q |
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| T |
5611086 |
aactcaatttaacacagcaaattcatcccaaaccttcatgtttgttg |
5611040 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 266 - 300
Target Start/End: Complemental strand, 5610937 - 5610903
Alignment:
| Q |
266 |
aatcgaatttctagaaaacaaaattatgggaaaac |
300 |
Q |
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| T |
5610937 |
aatcgaatttctagaaaacaaaattatggaaaaac |
5610903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 78 - 143
Target Start/End: Complemental strand, 1171185 - 1171120
Alignment:
| Q |
78 |
acaccaatccaagcttcaacctttcttcttcaagctaaactcaatttaacacagcaaattcatccc |
143 |
Q |
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| T |
1171185 |
acaccaatccaaccttctacctttcttcttcaagctaaactcaaatcaacacaacaaattcatccc |
1171120 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 80 - 148
Target Start/End: Complemental strand, 20391965 - 20391897
Alignment:
| Q |
80 |
accaatccaagcttcaacctttcttcttcaagctaaactcaatttaacacagcaaattcatcccaaacc |
148 |
Q |
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|||||||||| ||||| ||||||||| |||| |||||||||| | |||||| ||||||||||||||||| |
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| T |
20391965 |
accaatccaaccttcagcctttcttcatcaacctaaactcaaatcaacacaacaaattcatcccaaacc |
20391897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 59
Target Start/End: Complemental strand, 1171380 - 1171335
Alignment:
| Q |
15 |
caaattttaattcataaatctggatctaca-tttctaacacacaca |
59 |
Q |
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||||||||||||||||||| |||||||||| | ||||||||||||| |
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| T |
1171380 |
caaattttaattcataaatttggatctacagtctctaacacacaca |
1171335 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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