View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2249_low_12 (Length: 252)
Name: NF2249_low_12
Description: NF2249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2249_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 221; Significance: 1e-122; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 7135195 - 7134959
Alignment:
| Q |
1 |
tattgccgattgttttccaatgcacaaagaactcaaccttggtcaccttttggtgcacaaccaagtgtacacaacaacagaagttatagatgctgagcat |
100 |
Q |
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| T |
7135195 |
tattgccgattgttttccaatgcacaaagaactcaaccttggtcaccttttggtgcacaaccaagtgtacaccacaacagaagttatagatgccgggcat |
7135096 |
T |
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| Q |
101 |
tgcagaaaaagaagggtggaggatatactatctagaagattttgaggtgttgtagttttcccaagagatcagattaagcatggatgcactataataacaa |
200 |
Q |
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| T |
7135095 |
tgcagaaaaagaagggtggaggatatactatctagaagattttgaggtgttgtagttttcccaagagatcagattaagcatggatgcactataataacaa |
7134996 |
T |
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| Q |
201 |
aattttgtcaagagaaatattttcctagctagatagt |
237 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
7134995 |
cattttgtcaagagaaatattttcctagctagatagt |
7134959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 7138118 - 7137882
Alignment:
| Q |
1 |
tattgccgattgttttccaatgcacaaagaactcaaccttggtcaccttttggtgcacaaccaagtgtacacaacaacagaagttatagatgctgagcat |
100 |
Q |
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| T |
7138118 |
tattgccgattgttttccaatgcttaaagaactcaaccttggtcaccttttggtgcacaaccaagtgtacaccacaacagaagttatagatgccgggcat |
7138019 |
T |
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| Q |
101 |
tgcagaaaaagaagggtggaggatatactatctagaagattttgaggtgttgtagttttcccaagagatcagattaagcatggatgcactataataacaa |
200 |
Q |
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| T |
7138018 |
tgcagaaaaagaagggtggaggatatactatctagaagattttgaggtgttgtagttttcccaagagatcagattaagcatggatgcactataataacaa |
7137919 |
T |
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| Q |
201 |
aattttgtcaagagaaatattttcctagctagatagt |
237 |
Q |
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| T |
7137918 |
cattttgtcaagagaaatattttcctagctagatagt |
7137882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 150 - 237
Target Start/End: Complemental strand, 7116864 - 7116775
Alignment:
| Q |
150 |
ttgtagttttcccaagagatcagattaagcatggatgcactat-aataacaaaattttgt-caagagaaatattttcctagctagatagt |
237 |
Q |
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| T |
7116864 |
ttgtagttttcccaagagaacagattaagcatggatgcactataaataacaacattttttccaagagaaatcttttcctagctagatagt |
7116775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 150 - 237
Target Start/End: Complemental strand, 7121936 - 7121847
Alignment:
| Q |
150 |
ttgtagttttcccaagagatcagattaagcatggatgcactat-aataacaaaattttgt-caagagaaatattttcctagctagatagt |
237 |
Q |
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| T |
7121936 |
ttgtagttttcccaagagaacagattaagcatggatgcactataaataacaacattttttccaagagaaatcttttcctagctagatagt |
7121847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 150 - 237
Target Start/End: Complemental strand, 7129241 - 7129152
Alignment:
| Q |
150 |
ttgtagttttcccaagagatcagattaagcatggatgcactat-aataacaaaattttgt-caagagaaatattttcctagctagatagt |
237 |
Q |
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| T |
7129241 |
ttgtagttttcccaagagaacagattaagcatggatgcactataaataacaacattttttccaagagaaatcttttcctagctagatagt |
7129152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 125 - 236
Target Start/End: Complemental strand, 7174204 - 7174099
Alignment:
| Q |
125 |
atactatctagaagattttgaggtgttgtagttttcccaagagatcagattaagcatggatgcactataataacaaaattttgtcaagagaaatattttc |
224 |
Q |
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| T |
7174204 |
atactatctagagaattttgtggtgctgtagttttcccaagag----gattgagcatggatgcactataataac--aattttgccaagagaaatatttcc |
7174111 |
T |
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| Q |
225 |
ctagctagatag |
236 |
Q |
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|||||| ||||| |
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| T |
7174110 |
ctagcttgatag |
7174099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 7132272 - 7132213
Alignment:
| Q |
1 |
tattgccgattgttttccaatgcacaaagaactcaaccttggtcaccttttggtgcacaa |
60 |
Q |
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| T |
7132272 |
tattgccgattgttttccaatgcttaaagaactcaaccttggtcaccctttggtgaacaa |
7132213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 236
Target Start/End: Complemental strand, 7114290 - 7114214
Alignment:
| Q |
161 |
ccaagagatcagattaagcatggatgcactataataacaa-aattttgtcaagagaaatattttcctagctagatag |
236 |
Q |
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||||||||| | |||||||||||||||||| ||||||||| ||||| |||||||||| || |||||||||||| |
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| T |
7114290 |
ccaagagattaaattaagcatggatgcactctaataacaatgatttttccaagagaaatcttgaactagctagatag |
7114214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 236
Target Start/End: Complemental strand, 7122765 - 7122689
Alignment:
| Q |
161 |
ccaagagatcagattaagcatggatgcactataataacaa-aattttgtcaagagaaatattttcctagctagatag |
236 |
Q |
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||||||||| | |||||||||||||||||| ||||||||| ||||| |||||||||| || |||||||||||| |
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| T |
7122765 |
ccaagagattaaattaagcatggatgcactctaataacaatgatttttccaagagaaatcttgaactagctagatag |
7122689 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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