View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2249_low_2 (Length: 582)
Name: NF2249_low_2
Description: NF2249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2249_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 504; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 504; E-Value: 0
Query Start/End: Original strand, 22 - 568
Target Start/End: Complemental strand, 4996614 - 4996055
Alignment:
| Q |
22 |
gggattattatggagaaaagtgtgcaatcaatgatgaacggttggaaaaaggtttgaaagtggagggggaaacgtgattaagatttggattcttttgaaa |
121 |
Q |
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| T |
4996614 |
gggattattatggagaaaagtgtgcaatcaatgatgaacggttggaaaaaggtttgaaagtggagggggaaacgtgattaagatttggattcttttgaaa |
4996515 |
T |
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| Q |
122 |
agttgaaaaagtgaatacttgaaagcaataagaattttgcatgagaaaccataagtgaagaacaagacacagccaaaggtagagtgtaaggggtaaagca |
221 |
Q |
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| T |
4996514 |
agttgaaaaagtgattacttgaaatcaataagaattttgcatgagaaaccataagtgaagaacaagacacagccaaaggtagagtgtaaggggtaaagca |
4996415 |
T |
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| Q |
222 |
ttattacttccagaagaagaatcattcttggggataggataaggttaagaaatttggacaacctatgaaatttgtatagtactagagagagatgtgaaac |
321 |
Q |
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| T |
4996414 |
ttattacttccagaagaagaatcattcttggggataggataaggttaagaaatttggacaacctatgaaatttgtatagtactagagagagatgtgaaac |
4996315 |
T |
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| Q |
322 |
attttggagatgatttgatgaacatgttgactatgttattgtctctttgtttgtgatttttgta-------------ataggtggctacagtaagaatat |
408 |
Q |
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| T |
4996314 |
attttggagatgatttgatgaacatgttgactatgttattgtctctttgtttgtgatttttgtaatagagctatagtataggtggctacagtaagaatat |
4996215 |
T |
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| Q |
409 |
tttgcttaggagaataaggaatggtgcattctaaagaaaggaaaatgacatttaatttatgtactctaatctatttcaatttccaaccactaatgcagca |
508 |
Q |
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| T |
4996214 |
tttgcttaggagaataaggaatggtgcattctaaagaaaggaaaatgacatttaatttatgtactctaatctatttcaatttccaaccactaatgcagca |
4996115 |
T |
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| Q |
509 |
tggtagattttgaaagaaaagaaacaaaagttaatggttggaaagattctgttccctttg |
568 |
Q |
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| T |
4996114 |
tggtagattttgaaagaaaagaaacaaaagttaatggttggaaagaatctgttccctttg |
4996055 |
T |
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