View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2249_low_3 (Length: 503)
Name: NF2249_low_3
Description: NF2249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2249_low_3 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 396; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 5 - 487
Target Start/End: Original strand, 11619422 - 11619902
Alignment:
| Q |
5 |
tagattatactatattttttaataaggaatcaaactcggtacttcaaaatttacaacattcacacactcgatgtgtcaacaacttgagctagactcaagt |
104 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11619422 |
tagattataatatattttttaataaggaatcaaactcgatacttcaaaatttacaacattcacacactcgatgtgtcaacaacttgagctagactcaagt |
11619521 |
T |
|
| Q |
105 |
ggtaaaacgaattgcagttacatattagaaagtttgttattgaaagnnnnnnn-aatataaaatcaccaccattcatgtttagtctttatacaaatttta |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11619522 |
ggtaaaacgaattgcagttacatattagaaagtttgttattgaaagttttttttaatataaa-tcaccaccattcatgtttagtctttatacaaatttta |
11619620 |
T |
|
| Q |
204 |
tttactgttagtannnnnnnnnnctttcagattcctagagaaacaaaataaatagggacagactaataattgctgagtaaacattgtttaggaaacaaat |
303 |
Q |
| |
|
||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11619621 |
tttactgttggtatttttttt--ctttcagattcctagagaaacaaaataaatagggacagactaataattgctgagtaaacattgtttaggaaacaaat |
11619718 |
T |
|
| Q |
304 |
aaaaatcattagtatcaacatcaattgcttgttttgtgcaactaaaatttccaaaataacaaatactagtcctagtccaagcactatttatagtaagaaa |
403 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11619719 |
aaaaatcattagtatcaacatcaattgcttgttttgtgcaactaaaatttccaaaataacaaatactagtcctagtccaagcactatttatagtaagaaa |
11619818 |
T |
|
| Q |
404 |
taggagtagctggttatatgatgctcaaataatcatgacttatgattttgtcatatttatagacagtaacatgctgatgcaatg |
487 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11619819 |
taggagtagctggttatatgatgctcaaatgatcatgacttatgattttgtcatatttatagacagtaacatgctgatgcaatg |
11619902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 439 - 482
Target Start/End: Original strand, 11643539 - 11643582
Alignment:
| Q |
439 |
tgacttatgattttgtcatatttatagacagtaacatgctgatg |
482 |
Q |
| |
|
|||||| |||||||||| |||||||||||||||| ||||||||| |
|
|
| T |
11643539 |
tgacttttgattttgtcgtatttatagacagtaatatgctgatg |
11643582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University