View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2249_low_6 (Length: 360)
Name: NF2249_low_6
Description: NF2249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2249_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 19 - 338
Target Start/End: Original strand, 27527612 - 27527931
Alignment:
| Q |
19 |
cctacctcttcccatgttaagtgatgtttgttttaggaaattgttttttctttaattatattattatacctaaattacttcttctagctatatcnnnnnn |
118 |
Q |
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| T |
27527612 |
cctaccccttcccatgttaagtgatgtttgttttaggaaattgttttttctttaattatattattatacctaaattacttcttctagctatatctttttt |
27527711 |
T |
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| Q |
119 |
ncccaagaaaaacccaaacaagtaaaagggaacaaaccccagaaatatgcttaaaagcctttctattatagcttagagaatgttaatttatgggtctttc |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27527712 |
tcccaagaaaaacccaaacaagtaaaagggaacaaaccccagaaatatgcttaaaagcctttctattatagcttagagaatgttaatttatgggtctttc |
27527811 |
T |
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| Q |
219 |
ttcttctggacaagttttttgaagagagaccacatctgtgagtgtgagtgttctactactatcattcattttattatattataaaaatttgaagattggg |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27527812 |
ttcttctggacaagttttttgaagagagaccacatctgtgagtgtgagtgttctactactatcattcattttattatattataaaaatttgaagattggg |
27527911 |
T |
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| Q |
319 |
gtttgggaacaagtggtttc |
338 |
Q |
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||||||| |||||||||||| |
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| T |
27527912 |
gtttggggacaagtggtttc |
27527931 |
T |
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