View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2251_high_3 (Length: 364)
Name: NF2251_high_3
Description: NF2251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2251_high_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 16 - 346
Target Start/End: Complemental strand, 53674480 - 53674150
Alignment:
| Q |
16 |
atgaatcaacagaacagttcacctagaacagtacttctagatggactactagagggacaatccaacagcacagaagatgacacatttagcactagagcat |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53674480 |
atgaatcaacagaacagttcacctagaacagtacttctagatggactactagagggacaatccaacagcacagaagatgacacatttagcactagagcat |
53674381 |
T |
|
| Q |
116 |
caagcatgacatatacaccttcatctggtcctaagattaagagaaaatcacaattatcattcaggttcataatttcgtttcttggttcaccattcagaat |
215 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
53674380 |
caagcttgacatatacaccttcatctggtcctaagattaagagaaaatcacaattatcattcaggttcataatatcgtttcttggttcaccattcagaat |
53674281 |
T |
|
| Q |
216 |
aaaaaccttcaacatgtccaaaattgaaaaacatcaacccttgttgaagtgcttcagctatgaaaatatatcaaatgctactaatgactttcaccaaggt |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53674280 |
aaaaaccttcaacatgtccaaaattgaaaaacatcaacccttgttgaattgcttcagctatgaaaatatatcaaatgctactaatgactttcaccaaggt |
53674181 |
T |
|
| Q |
316 |
atataattaatcttatttttaatgtcatatg |
346 |
Q |
| |
|
|||| |||||| ||||||||||||||||||| |
|
|
| T |
53674180 |
atattattaatgttatttttaatgtcatatg |
53674150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University