View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2251_high_8 (Length: 252)
Name: NF2251_high_8
Description: NF2251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2251_high_8 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 55083 - 54845
Alignment:
| Q |
1 |
tataccgtgcatatatatgtatattaattaattagtctttttattataattataaagctctagctggttataaaaagaaaaattaatgtatgtaaggtct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55083 |
tataccgtgcatatatatgtatattaattaattagtctttttattataattataaagctctagctggttataaaaagaaaaattaatgtatgtaaggtct |
54984 |
T |
|
| Q |
101 |
cttttgtgggcagacatattctacaaagaaagaattgtaataagaaaatgtcataattaggggtatcttacttttgaagcttagtgccttaatcnnnnnn |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54983 |
cttttgtgggcagacatattctacaaagaaagaattgtaataagaaaatgtcataattaggggtatcttacttttgaagcttagtgccttaatc----ta |
54888 |
T |
|
| Q |
201 |
nnnnnnnnctttgatgtttgatcgtatcctaattaagtataat |
243 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
54887 |
tatatatactttgatgtttgatcgtatcctaattaagtataat |
54845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University