View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2251_low_10 (Length: 280)
Name: NF2251_low_10
Description: NF2251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2251_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 40599289 - 40599038
Alignment:
| Q |
1 |
ctaccactcaccctccaaccatttatttgttgactatccttctactttgaagctaagagttgaagctaagagacattcatttattcaaaattcattgata |
100 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40599289 |
ctaccactcaccctccaaccatttatttgttgactaaccttctactttgaagctaagagttgaagctaagagacattcatttattcaaaattcattgata |
40599190 |
T |
|
| Q |
101 |
catcctttctccatgctgcaacatgtgtgagttccaattcctttcatttaaatttttgtttcagttactctctccattttaaagtgcatacagtcgttca |
200 |
Q |
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|||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| |||||||| |
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| T |
40599189 |
catcctttatgcatgctgcaacatgtgtgagttccaattcctttcatttaaatttttgtttcagttactctctccgttttaaattgcatac-gtcgttca |
40599091 |
T |
|
| Q |
201 |
aagtctatacacacagattaagaaatgcaataaaattgtatgtaaaacaacat |
253 |
Q |
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|||||| |||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
40599090 |
aagtctgtacacacagagtaagaaatgcaataaaattgtatgtaaaacaacat |
40599038 |
T |
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