View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2251_low_18 (Length: 220)
Name: NF2251_low_18
Description: NF2251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2251_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 7 - 203
Target Start/End: Original strand, 32165121 - 32165317
Alignment:
| Q |
7 |
atgtcgaagaatattgaaaagtctctaattaaaaacaagtgtgtgtgattttatgaacataaattgtacctcaacaacaggagtaaaccatctaagacca |
106 |
Q |
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| T |
32165121 |
atgtctaagaatattgaaaagtctctgattaaaaacaagtgtgtgtgattttatgaacataaattgtacctcaacaacaggagtaaaccatctaagacca |
32165220 |
T |
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| Q |
107 |
aaacgaggaatagaggttccatgaatagaagtcagataacatgtttcagagatgttgaattcagcagctactgattgcaaccattcatcatctttat |
203 |
Q |
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| T |
32165221 |
aaacgaggaatagaggttccatgaatagaagtcagataacatgtttccgagatgttgaattcagcagctactgattgcaaccattcatcatctttat |
32165317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 72 - 203
Target Start/End: Original strand, 32168977 - 32169108
Alignment:
| Q |
72 |
gtacctcaacaacaggagtaaaccatctaagaccaaaacgaggaatagaggttccatgaatagaagtcagataacatgtttcagagatgttgaattcagc |
171 |
Q |
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| T |
32168977 |
gtacctcagcaacaggagtaaaccatctaagaccaaaacgaggaatagaggttccatgaataggagtcaaataacatgtttcagagatgttgaattcagc |
32169076 |
T |
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| Q |
172 |
agctactgattgcaaccattcatcatctttat |
203 |
Q |
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| T |
32169077 |
agctactaattgcaaccattcatcatctttat |
32169108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 74 - 203
Target Start/End: Original strand, 27350134 - 27350263
Alignment:
| Q |
74 |
acctcaacaacaggagtaaaccatctaagaccaaaacgaggaatagaggttccatgaatagaagtcagataacatgtttcagagatgttgaattcagcag |
173 |
Q |
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| T |
27350134 |
acctcaacaataggagtaaaccatttcagaccaaaacgaggaatagaggttccatgaataggagtcaaataacatgtttgagagacattgaattcagcag |
27350233 |
T |
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| Q |
174 |
ctactgattgcaaccattcatcatctttat |
203 |
Q |
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| T |
27350234 |
ctaatgattgcaaccattcatcatctttat |
27350263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 74 - 203
Target Start/End: Original strand, 27325104 - 27325233
Alignment:
| Q |
74 |
acctcaacaacaggagtaaaccatctaagaccaaaacgaggaatagaggttccatgaatagaagtcagataacatgtttcagagatgttgaattcagcag |
173 |
Q |
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| T |
27325104 |
acctcaacagtaggagtaaaccatctgagaccaaaacgaggaatagaggttccatgaataggagtcaaataacatgtttgagagacattgaattcagcag |
27325203 |
T |
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| Q |
174 |
ctactgattgcaaccattcatcatctttat |
203 |
Q |
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| T |
27325204 |
ctaatgcttgcaaccattcatcatctttat |
27325233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 73 - 187
Target Start/End: Complemental strand, 29697731 - 29697614
Alignment:
| Q |
73 |
tacctcaacaacaggagtaaaccatctaagaccaaaacgaggaatagaggttccatgaatag---aagtcagataacatgtttcagagatgttgaattca |
169 |
Q |
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||||||| |||| ||||||||||||| ||||||||||| ||| || ||| || |||||||| |||| | |||||| |||||||| || ||||||||| |
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| T |
29697731 |
tacctcagtaacatgagtaaaccatctgagaccaaaacggggattaaaggctctatgaataggataagttaaataacaggtttcagatatattgaattca |
29697632 |
T |
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| Q |
170 |
gcagctactgattgcaac |
187 |
Q |
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| T |
29697631 |
gcacttaatgattgcaac |
29697614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 82 - 111
Target Start/End: Complemental strand, 29689556 - 29689527
Alignment:
| Q |
82 |
aacaggagtaaaccatctaagaccaaaacg |
111 |
Q |
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| T |
29689556 |
aacaggagtaaaccatctaagaccaaaacg |
29689527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 64 - 117
Target Start/End: Complemental strand, 44288414 - 44288361
Alignment:
| Q |
64 |
cataaattgtacctcaacaacaggagtaaaccatctaagaccaaaacgaggaat |
117 |
Q |
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|||||||||||||||||| | |||| |||||||||||||| |||||| ||||| |
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| T |
44288414 |
cataaattgtacctcaactataggactaaaccatctaagatgaaaacggggaat |
44288361 |
T |
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