View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2251_low_8 (Length: 297)

Name: NF2251_low_8
Description: NF2251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2251_low_8
NF2251_low_8
[»] chr5 (12 HSPs)
chr5 (11-279)||(41283128-41283406)
chr5 (88-159)||(28813031-28813102)
chr5 (88-154)||(18015757-18015823)
chr5 (88-154)||(9741840-9741906)
chr5 (88-154)||(19995390-19995456)
chr5 (88-154)||(23204491-23204557)
chr5 (88-154)||(38758599-38758665)
chr5 (177-266)||(13424865-13424954)
chr5 (116-154)||(16994129-16994167)
chr5 (88-154)||(17689317-17689383)
chr5 (98-135)||(23129594-23129631)
chr5 (88-132)||(16490718-16490762)
[»] chr2 (16 HSPs)
chr2 (177-278)||(5428457-5428560)
chr2 (88-154)||(9548183-9548249)
chr2 (88-153)||(10862629-10862694)
chr2 (177-240)||(20929784-20929847)
chr2 (88-154)||(18924512-18924578)
chr2 (88-154)||(34450368-34450434)
chr2 (88-153)||(27097086-27097151)
chr2 (88-154)||(21950754-21950820)
chr2 (88-154)||(29471607-29471673)
chr2 (88-154)||(24314329-24314396)
chr2 (88-154)||(10664664-10664730)
chr2 (88-154)||(12895443-12895508)
chr2 (177-251)||(17989255-17989329)
chr2 (104-150)||(39830673-39830719)
chr2 (88-150)||(12725694-12725756)
chr2 (224-270)||(19263636-19263682)
[»] chr3 (26 HSPs)
chr3 (177-271)||(7298926-7299019)
chr3 (88-154)||(54253774-54253840)
chr3 (88-153)||(46969878-46969943)
chr3 (19-90)||(31430689-31430759)
chr3 (88-154)||(41355528-41355594)
chr3 (88-153)||(34673324-34673389)
chr3 (96-154)||(11238789-11238847)
chr3 (88-154)||(35280523-35280589)
chr3 (88-154)||(54411771-54411837)
chr3 (97-154)||(3283251-3283308)
chr3 (88-149)||(13700234-13700295)
chr3 (88-153)||(27026617-27026682)
chr3 (88-154)||(4126088-4126154)
chr3 (88-154)||(19228678-19228744)
chr3 (88-150)||(50090813-50090875)
chr3 (88-154)||(52945684-52945750)
chr3 (88-153)||(5232594-5232659)
chr3 (88-153)||(9665424-9665489)
chr3 (88-153)||(27037963-27038028)
chr3 (88-154)||(38101168-38101234)
chr3 (88-154)||(39328527-39328593)
chr3 (88-153)||(8674651-8674716)
chr3 (88-137)||(20513027-20513076)
chr3 (88-129)||(39866794-39866835)
chr3 (110-154)||(21482015-21482059)
chr3 (88-132)||(45408361-45408405)
[»] chr7 (24 HSPs)
chr7 (180-278)||(47363933-47364030)
chr7 (88-154)||(36343104-36343170)
chr7 (88-154)||(41378346-41378412)
chr7 (88-153)||(41585855-41585920)
chr7 (88-159)||(48227201-48227272)
chr7 (97-159)||(3961300-3961362)
chr7 (88-154)||(26927940-26928006)
chr7 (88-154)||(9522441-9522507)
chr7 (88-154)||(41037239-41037305)
chr7 (88-153)||(21993584-21993649)
chr7 (106-154)||(32392212-32392260)
chr7 (88-159)||(3203257-3203328)
chr7 (88-154)||(5995027-5995093)
chr7 (88-154)||(24611530-24611596)
chr7 (88-154)||(28333738-28333804)
chr7 (88-154)||(31953273-31953339)
chr7 (98-154)||(27131121-27131177)
chr7 (106-154)||(35221640-35221688)
chr7 (88-151)||(35983221-35983284)
chr7 (88-151)||(36004633-36004696)
chr7 (88-154)||(45100085-45100152)
chr7 (88-154)||(14656568-14656634)
chr7 (88-154)||(28059225-28059291)
chr7 (88-153)||(3349990-3350055)
[»] chr1 (23 HSPs)
chr1 (88-154)||(1469671-1469737)
chr1 (177-251)||(32617856-32617930)
chr1 (178-251)||(12990144-12990217)
chr1 (88-153)||(24992842-24992907)
chr1 (88-151)||(1627654-1627717)
chr1 (88-154)||(25825274-25825340)
chr1 (18-90)||(32848905-32848977)
chr1 (88-154)||(1838636-1838702)
chr1 (178-278)||(14081955-14082056)
chr1 (97-154)||(15660852-15660909)
chr1 (94-153)||(30414079-30414138)
chr1 (88-154)||(8549538-8549604)
chr1 (177-251)||(9457446-9457520)
chr1 (177-251)||(9461543-9461617)
chr1 (94-153)||(26842869-26842928)
chr1 (96-159)||(48875077-48875140)
chr1 (88-139)||(49660402-49660453)
chr1 (88-154)||(10769745-10769811)
chr1 (88-150)||(43939432-43939494)
chr1 (88-153)||(26897368-26897432)
chr1 (96-132)||(9338847-9338883)
chr1 (246-278)||(24700026-24700058)
chr1 (88-140)||(42470615-42470667)
[»] chr6 (12 HSPs)
chr6 (88-153)||(18102559-18102624)
chr6 (188-272)||(32296194-32296277)
chr6 (88-154)||(15081235-15081301)
chr6 (88-143)||(12159435-12159490)
chr6 (88-150)||(10075107-10075169)
chr6 (112-154)||(14975382-14975424)
chr6 (96-154)||(19102060-19102118)
chr6 (88-154)||(29427210-29427276)
chr6 (88-132)||(18096439-18096483)
chr6 (88-154)||(6322604-6322670)
chr6 (88-154)||(7190710-7190776)
chr6 (177-251)||(8169237-8169310)
[»] chr8 (28 HSPs)
chr8 (88-154)||(16930780-16930846)
chr8 (88-154)||(19922625-19922691)
chr8 (88-154)||(3210843-3210909)
chr8 (88-154)||(10078416-10078482)
chr8 (88-154)||(40067458-40067524)
chr8 (112-153)||(12295136-12295177)
chr8 (179-251)||(23490237-23490309)
chr8 (88-143)||(22812309-22812364)
chr8 (88-154)||(253926-253992)
chr8 (88-154)||(661866-661932)
chr8 (88-154)||(847664-847730)
chr8 (177-235)||(14867560-14867618)
chr8 (88-154)||(30774240-30774306)
chr8 (97-151)||(33568047-33568101)
chr8 (88-153)||(9478826-9478891)
chr8 (88-149)||(40067534-40067594)
chr8 (97-154)||(41624627-41624684)
chr8 (88-140)||(42806326-42806378)
chr8 (88-139)||(16645471-16645522)
chr8 (94-153)||(16784444-16784502)
chr8 (88-154)||(44508881-44508947)
chr8 (98-143)||(12176193-12176238)
chr8 (98-143)||(12420621-12420666)
chr8 (97-154)||(26912299-26912355)
chr8 (113-154)||(28539303-28539344)
chr8 (112-153)||(44874052-44874093)
chr8 (246-278)||(10473879-10473911)
chr8 (88-132)||(28969098-28969142)
[»] chr4 (22 HSPs)
chr4 (88-154)||(32626041-32626107)
chr4 (88-154)||(34728199-34728265)
chr4 (177-278)||(55606497-55606598)
chr4 (177-250)||(25967801-25967874)
chr4 (177-251)||(28146787-28146861)
chr4 (88-154)||(51682538-51682604)
chr4 (88-153)||(40479961-40480026)
chr4 (94-153)||(20835827-20835886)
chr4 (88-154)||(27907104-27907170)
chr4 (88-154)||(34041171-34041237)
chr4 (98-154)||(43837669-43837725)
chr4 (88-152)||(51702571-51702635)
chr4 (88-154)||(7645861-7645927)
chr4 (88-154)||(20503547-20503613)
chr4 (177-270)||(38412128-38412227)
chr4 (88-154)||(42434208-42434274)
chr4 (88-153)||(6137374-6137439)
chr4 (88-154)||(32089942-32090008)
chr4 (243-272)||(28146863-28146892)
chr4 (88-132)||(11020349-11020393)
chr4 (88-156)||(32868099-32868167)
chr4 (106-154)||(47960274-47960322)
[»] scaffold0002 (1 HSPs)
scaffold0002 (88-154)||(94785-94851)
[»] scaffold0246 (1 HSPs)
scaffold0246 (88-153)||(17900-17965)
[»] scaffold0086 (1 HSPs)
scaffold0086 (88-154)||(8504-8570)
[»] scaffold0057 (1 HSPs)
scaffold0057 (88-154)||(75037-75103)
[»] scaffold0001 (1 HSPs)
scaffold0001 (88-154)||(392520-392586)
[»] scaffold0989 (1 HSPs)
scaffold0989 (179-251)||(2093-2165)
[»] scaffold0093 (1 HSPs)
scaffold0093 (88-154)||(9265-9331)


Alignment Details
Target: chr5 (Bit Score: 157; Significance: 2e-83; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 11 - 279
Target Start/End: Original strand, 41283128 - 41283406
Alignment:
Q  11 cacagagtacactagccacatttaaatagaaaacaaactatatttaattttcataatataaccagatgaacaattccaaaatgtggaaatcacatcttga 110  Q
    |||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  41283128 cacagagtacactagccacacttaaatagaaaaccaactatatttaattttcataatataaccagatgaacaattccaaaaagtggaaatcacatcttga 41283227  T
Q  111 tgtgtgggttgctaaaagacacattcatgggtgacttctagcaatactcnnnnnnnnnnnnnnnnnaggttttaaaaaacggtccgttactaagaaaaag 210  Q
    |||||| ||||||||||||||||||||||| ||||||||||||| || |                 ||||||||||||||||||||||||||||||||||    
T  41283228 tgtgtgagttgctaaaagacacattcatggatgacttctagcaaaacccatatatatagatatataaggttttaaaaaacggtccgttactaagaaaaag 41283327  T
Q  211 gttgcgacaaaaaagtataggtagcggacgtt----------accgtttttacagagtgaacaaaaatcacgtcgaaaa 279  Q
    || | |||||||||||||||||||||||||||          |||||||||||||||||||||||||||||||||||||    
T  41283328 gtcgtgacaaaaaagtataggtagcggacgttaccgtttttcaccgtttttacagagtgaacaaaaatcacgtcgaaaa 41283406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 88 - 159
Target Start/End: Complemental strand, 28813102 - 28813031
Alignment:
Q  88 aaaatgtggaaatcacatcttgatgtgtgggttgctaaaagacacattcatgggtgacttctagcaatactc 159  Q
    |||| |||||||||||| ||||| ||||||||||||||||||||| |||||| ||| |||||||||| ||||    
T  28813102 aaaaagtggaaatcacaccttgaggtgtgggttgctaaaagacaccttcatgagtggcttctagcaaaactc 28813031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 88 - 154
Target Start/End: Original strand, 18015757 - 18015823
Alignment:
Q  88 aaaatgtggaaatcacatcttgatgtgtgggttgctaaaagacacattcatgggtgacttctagcaa 154  Q
    |||| |||||||||||| ||||| ||||||||||||||||||||  |||||||||| ||||||||||    
T  18015757 aaaaagtggaaatcacaccttgaggtgtgggttgctaaaagacatcttcatgggtggcttctagcaa 18015823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 88 - 154
Target Start/End: Original strand, 9741840 - 9741906
Alignment:
Q  88 aaaatgtggaaatcacatcttgatgtgtgggttgctaaaagacacattcatgggtgacttctagcaa 154  Q
    |||| |||||||||||| |||||  |||||||||||||||||||| |||||| ||| ||||||||||    
T  9741840 aaaaagtggaaatcacaccttgagatgtgggttgctaaaagacaccttcatgagtggcttctagcaa 9741906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 88 - 154
Target Start/End: Original strand, 19995390 - 19995456
Alignment:
Q  88 aaaatgtggaaatcacatcttgatgtgtgggttgctaaaagacacattcatgggtgacttctagcaa 154  Q
    |||| |||||||||||| ||||| |||||| |||||||||||| | |||||||||| ||||||||||    
T  19995390 aaaaagtggaaatcacaccttgaggtgtggattgctaaaagaccccttcatgggtggcttctagcaa 19995456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 88 - 154
Target Start/End: Original strand, 23204491 - 23204557
Alignment:
Q  88 aaaatgtggaaatcacatcttgatgtgtgggttgctaaaagacacattcatgggtgacttctagcaa 154  Q
    |||| |||||||||||| ||||| |||||  |||||||||||||| |||||||||| ||||||||||    
T  23204491 aaaaagtggaaatcacaccttgaggtgtgacttgctaaaagacaccttcatgggtggcttctagcaa 23204557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 88 - 154
Target Start/End: Complemental strand, 38758665 - 38758599
Alignment:
Q  88 aaaatgtggaaatcacatcttgatgtgtgggttgctaaaagacacattcatgggtgacttctagcaa 154  Q
    |||| ||| |||||||| |||||  |||||||||||||||||||| |||||| ||| ||||||||||    
T  38758665 aaaaagtgaaaatcacaccttgagatgtgggttgctaaaagacaccttcatgagtggcttctagcaa 38758599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 177 - 266
Target Start/End: Complemental strand, 13424954 - 13424865
Alignment:
Q  177 aggttttaaaaaacggtccgttactaagaaaaaggttgcgacaaaaaagtataggtagcggacgttaccgtttttacagagtgaacaaaa 266  Q
    ||||||||||| | ||||| ||||  ||||||||   |||| ||||| ||||||||||| || ||||| |||||||| ||||||||||||    
T  13424954 aggttttaaaatatggtccattaccgagaaaaagaccgcgaaaaaaaggtataggtagccgatgttactgtttttacggagtgaacaaaa 13424865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 116 - 154
Target Start/End: Complemental strand, 16994167 - 16994129
Alignment:
Q  116 gggttgctaaaagacacattcatgggtgacttctagcaa 154  Q
    ||||||||||||||||| ||||| |||||||||||||||    
T  16994167 gggttgctaaaagacactttcataggtgacttctagcaa 16994129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 88 - 154
Target Start/End: Complemental strand, 17689383 - 17689317
Alignment:
Q  88 aaaatgtggaaatcacatcttgatgtgtgggttgctaaaagacacattcatgggtgacttctagcaa 154  Q
    |||| ||| |||||||| ||| | |||||| |||||||||||||| || ||||||| ||||||||||    
T  17689383 aaaaagtgaaaatcacaccttaaggtgtggattgctaaaagacaccttaatgggtggcttctagcaa 17689317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 135
Target Start/End: Complemental strand, 23129631 - 23129594
Alignment:
Q  98 aatcacatcttgatgtgtgggttgctaaaagacacatt 135  Q
    ||||||||||||| |||||| |||||||||||||||||    
T  23129631 aatcacatcttgaggtgtggattgctaaaagacacatt 23129594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 88 - 132
Target Start/End: Complemental strand, 16490762 - 16490718
Alignment:
Q  88 aaaatgtggaaatcacatcttgatgtgtgggttgctaaaagacac 132  Q
    |||| |||||||||||| ||| | |||||||||||||||||||||    
T  16490762 aaaaagtggaaatcacaccttaaggtgtgggttgctaaaagacac 16490718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 3e-23; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 177 - 278
Target Start/End: Original strand, 5428457 - 5428560
Alignment:
Q  177 aggttttaaaaaacggtc-cgttactaagaaaaaggttgcgacaaaaaag-tataggtagcggacgttaccgtttttacagagtgaacaaaaatcacgtc 274  Q
    |||||||||||||||||| | ||||  |||||| ||| |||| ||||||| |||||||||| |||||||||||||||||||||||||||||||||||| |    
T  5428457 aggttttaaaaaacggtctctttacagagaaaatggtcgcgataaaaaagatataggtagccgacgttaccgtttttacagagtgaacaaaaatcacgac 5428556  T
Q  275 gaaa 278  Q
    ||||    
T  5428557 gaaa 5428560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 88 - 154
Target Start/End: Complemental strand, 9548249 - 9548183
Alignment:
Q  88 aaaatgtggaaatcacatcttgatgtgtgggttgctaaaagacacattcatgggtgacttctagcaa 154  Q
    |||| |||||||||||||||||| ||||||||||||||||||||| |||||||||| ||||||||||    
T  9548249 aaaaagtggaaatcacatcttgaggtgtgggttgctaaaagacaccttcatgggtggcttctagcaa 9548183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 88 - 153
Target Start/End: Original strand, 10862629 - 10862694
Alignment:
Q  88 aaaatgtggaaatcacatcttgatgtgtgggttgctaaaagacacattcatgggtgacttctagca 153  Q
    |||| |||||||||||| ||||| ||||||||||||||||||||| |||||||||| |||||||||    
T  10862629 aaaaagtggaaatcacaccttgaggtgtgggttgctaaaagacaccttcatgggtggcttctagca 10862694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 177 - 240
Target Start/End: Original strand, 20929784 - 20929847
Alignment:
Q  177 aggttttaaaaaacggtccgttactaagaaaaaggttgcgacaaaaaagtataggtagcggacg 240  Q
    |||||||||||||| ||||||||| ||||||||||| ||| |||||| ||||||||||||||||    
T  20929784 aggttttaaaaaacagtccgttaccaagaaaaaggtcgcgccaaaaaggtataggtagcggacg 20929847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 88 - 154
Target Start/End: Complemental strand, 18924578 - 18924512
Alignment:
Q  88 aaaatgtggaaatcacatcttgatgtgtgggttgctaaaagacacattcatgggtgacttctagcaa 154  Q
    |||| |||||||||||| ||||| || |||||||||||||||||| |||||||||| ||||||||||    
T  18924578 aaaaagtggaaatcacaccttgaggtatgggttgctaaaagacaccttcatgggtggcttctagcaa 18924512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 88 - 154
Target Start/End: Original strand, 34450368 - 34450434
Alignment:
Q  88 aaaatgtggaaatcacatcttgatgtgtgggttgctaaaagacacattcatgggtgacttctagcaa 154  Q
    |||| |||||||||||| ||||| ||||||||||||||||||||| ||||||| || ||||||||||    
T  34450368 aaaaagtggaaatcacaccttgaggtgtgggttgctaaaagacaccttcatggatggcttctagcaa 34450434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 88 - 153
Target Start/End: Original strand, 27097086 - 27097151
Alignment:
Q  88 aaaatgtggaaatcacatcttgatgtgtgggttgctaaaagacacattcatgggtgacttctagca 153  Q
    |||| |||||||||||| ||||| ||||||||||| ||||||||| |||||||||| |||||||||    
T  27097086 aaaaagtggaaatcacaccttgaggtgtgggttgccaaaagacaccttcatgggtggcttctagca 27097151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 88 - 154
Target Start/End: Original strand, 21950754 - 21950820
Alignment:
Q  88 aaaatgtggaaatcacatcttgatgtgtgggttgctaaaagacacattcatgggtgacttctagcaa 154  Q
    |||| ||| |||||| | ||||| ||||||||||||||||||||| ||||||| |||||||||||||    
T  21950754 aaaaagtgaaaatcataccttgaggtgtgggttgctaaaagacactttcatggatgacttctagcaa 21950820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 88 - 154
Target Start/End: Complemental strand, 29471673 - 29471607
Alignment:
Q  88 aaaatgtggaaatcacatcttgatgtgtgggttgctaaaagacacattcatgggtgacttctagcaa 154  Q
    |||| |||||||||||  ||||| |||||| |||||||||||||| |||||||||| ||||||||||    
T  29471673 aaaaagtggaaatcactccttgaggtgtggattgctaaaagacaccttcatgggtggcttctagcaa 29471607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 88 - 154
Target Start/End: Original strand, 24314329 - 24314396
Alignment:
Q  88 aaaatgtggaaatcacatcttgatgtgtgggttgctaaaagacacattcatggg-tgacttctagcaa 154  Q
    ||||||||||||||||| ||||| |||||  |||||||||||||| |||||||| || ||||||||||    
T  24314329 aaaatgtggaaatcacaccttgaggtgtgaattgctaaaagacaccttcatgggatggcttctagcaa 24314396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 88 - 154
Target Start/End: Complemental strand, 10664730 - 10664664
Alignment:
Q  88 aaaatgtggaaatcacatcttgatgtgtgggttgctaaaagacacattcatgggtgacttctagcaa 154  Q
    |||| |||||||||||| ||||| ||||||||| ||||||||||| ||||| |||| ||| ||||||    
T  10664730 aaaaagtggaaatcacaccttgaggtgtgggttactaaaagacaccttcatcggtggcttatagcaa 10664664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 88 - 154
Target Start/End: Original strand, 12895443 - 12895508
Alignment:
Q  88 aaaatgtggaaatcacatcttgatgtgtgggttgctaaaagacacattcatgggtgacttctagcaa 154  Q
    |||| ||| |||||||||||||| |||||| |||||||||||||| ||||| |||| ||||||||||    
T  12895443 aaaaagtgaaaatcacatcttgaggtgtggattgctaaaagacaccttcat-ggtggcttctagcaa 12895508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 177 - 251
Target Start/End: Complemental strand, 17989329 - 17989255
Alignment:
Q  177 aggttttaaaaaacggtccgttactaagaaaaaggttgcgacaaaaaagtataggtagcggacgttaccgttttt 251  Q
    ||||||||||||| |||||||||| ||| ||||||   | ||||||| |||||||||||| || |||||||||||    
T  17989329 aggttttaaaaaatggtccgttaccaaggaaaaggccacaacaaaaaggtataggtagcgaacattaccgttttt 17989255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 104 - 150
Target Start/End: Original strand, 39830673 - 39830719
Alignment:
Q  104 atcttgatgtgtgggttgctaaaagacacattcatgggtgacttcta 150  Q
    ||||||| ||||||||||||||||||||| |||||||||| ||||||    
T  39830673 atcttgaggtgtgggttgctaaaagacaccttcatgggtggcttcta 39830719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 88 - 150
Target Start/End: Complemental strand, 12725756 - 12725694
Alignment:
Q  88 aaaatgtggaaatcacatcttgatgtgtgggttgctaaaagacacattcatgggtgacttcta 150  Q
    |||| ||||||||||||  |||| ||||||  ||||||||||||| |||||||||| ||||||    
T  12725756 aaaaagtggaaatcacactttgaggtgtggcctgctaaaagacaccttcatgggtggcttcta 12725694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 224 - 270
Target Start/End: Original strand, 19263636 - 19263682
Alignment:
Q  224 agtataggtagcggacgttaccgtttttacagagtgaacaaaaatca 270  Q
    |||||||||||| ||||||||| ||||||||  ||||||||||||||    
T  19263636 agtataggtagccgacgttaccatttttacaatgtgaacaaaaatca 19263682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 177 - 271
Target Start/End: Original strand, 7298926 - 7299019
Alignment:
Q  177 aggttttaaaaaacggtccgttactaagaaaaaggttgcgacaaaaaagtataggtagcggacgttaccgtttttacagagtgaacaaaaatcac 271  Q
    ||||||||||||||||||||||||  |||||||||  |||||||||| |||| |||||| |||||||||| ||||||| ||||||||||||||||    
T  7298926 aggttttaaaaaacggtccgttaccgagaaaaaggccgcgacaaaaa-gtatcggtagccgacgttaccgcttttacaaagtgaacaaaaatcac 7299019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 88 - 154
Target Start/End: Complemental strand, 54253840 - 54253774
Alignment:
Q  88 aaaatgtggaaatcacatcttgatgtgtgggttgctaaaagacacattcatgggtgacttctagcaa 154  Q
    |||| |||||||||||| ||||| ||||||||||||||||||||| |||||||||| ||||||||||    
T  54253840 aaaaagtggaaatcacaccttgaggtgtgggttgctaaaagacaccttcatgggtggcttctagcaa 54253774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 88 - 153
Target Start/End: Complemental strand, 46969943 - 46969878
Alignment:
Q  88 aaaatgtggaaatcacatcttgatgtgtgggttgctaaaagacacattcatgggtgacttctagca 153  Q
    |||| |||||||||| | ||||||||||||||||||||||||||| |||||||||| |||||||||    
T  46969943 aaaaagtggaaatcataccttgatgtgtgggttgctaaaagacaccttcatgggtggcttctagca 46969878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 19 - 90
Target Start/End: Complemental strand, 31430759 - 31430689
Alignment:
Q  19 acactagccacatttaaatagaaaacaaactatatttaattttcataatataaccagatgaacaattccaaa 90  Q
    |||||||||||| ||||| ||||||| || | ||||||||||||||||||||||| ||||||||||||||||    
T  31430759 acactagccacacttaaa-agaaaaccaaatttatttaattttcataatataaccggatgaacaattccaaa 31430689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 88 - 154
Target Start/End: Original strand, 41355528 - 41355594
Alignment:
Q  88 aaaatgtggaaatcacatcttgatgtgtgggttgctaaaagacacattcatgggtgacttctagcaa 154  Q
    |||| |||||||||||| |||||  |||||||||||||||||||| |||||||||| ||||||||||    
T  41355528 aaaaagtggaaatcacaccttgagttgtgggttgctaaaagacaccttcatgggtggcttctagcaa 41355594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 88 - 153
Target Start/End: Complemental strand, 34673389 - 34673324
Alignment:
Q  88 aaaatgtggaaatcacatcttgatgtgtgggttgctaaaagacacattcatgggtgacttctagca 153  Q
    |||| |||||||||||| ||||| ||||||||||||||||||||| ||||||| || |||||||||    
T  34673389 aaaaagtggaaatcacaccttgaggtgtgggttgctaaaagacaccttcatggatggcttctagca 34673324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 96 - 154
Target Start/End: Original strand, 11238789 - 11238847
Alignment:
Q  96 gaaatcacatcttgatgtgtgggttgctaaaagacacattcatgggtgacttctagcaa 154  Q
    ||||||||| ||||| ||||||||||||||||||||||||||||| ||  |||||||||    
T  11238789 gaaatcacaccttgaggtgtgggttgctaaaagacacattcatggatgcgttctagcaa 11238847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 88 - 154
Target Start/End: Original strand, 35280523 - 35280589
Alignment:
Q  88 aaaatgtggaaatcacatcttgatgtgtgggttgctaaaagacacattcatgggtgacttctagcaa 154  Q
    |||| |||||||||||| |||||  ||||||||||||||| |||| |||||||||| ||||||||||    
T  35280523 aaaaagtggaaatcacaccttgagttgtgggttgctaaaacacaccttcatgggtggcttctagcaa 35280589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 88 - 154
Target Start/End: Complemental strand, 54411837 - 54411771
Alignment:
Q  88 aaaatgtggaaatcacatcttgatgtgtgggttgctaaaagacacattcatgggtgacttctagcaa 154  Q
    |||| |||||||||||| ||||| |||| |||||||||||||||| |||||| ||| ||||||||||    
T  54411837 aaaaagtggaaatcacaccttgaggtgtaggttgctaaaagacactttcatgagtggcttctagcaa 54411771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 97 - 154
Target Start/End: Complemental strand, 3283308 - 3283251
Alignment:
Q  97 aaatcacatcttgatgtgtgggttgctaaaagacacattcatgggtgacttctagcaa 154  Q
    |||||||| ||||| ||||||||||||||||||||| ||||||| || ||||||||||    
T  3283308 aaatcacaccttgaggtgtgggttgctaaaagacaccttcatggatggcttctagcaa 3283251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 88 - 149
Target Start/End: Complemental strand, 13700295 - 13700234
Alignment:
Q  88 aaaatgtggaaatcacatcttgatgtgtgggttgctaaaagacacattcatgggtgacttct 149  Q
    |||| ||||||||||||  |||| ||||||||||||||||||||| |||||||||| |||||    
T  13700295 aaaaagtggaaatcacacattgaggtgtgggttgctaaaagacaccttcatgggtggcttct 13700234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 88 - 153
Target Start/End: Complemental strand, 27026682 - 27026617
Alignment:
Q  88 aaaatgtggaaatcacatcttgatgtgtgggttgctaaaagacacattcatgggtgacttctagca 153  Q
    |||| |||||||| ||| ||||| ||| ||||| |||||||||||||||||||||| |||||||||    
T  27026682 aaaaagtggaaattacaccttgaggtgggggtttctaaaagacacattcatgggtggcttctagca 27026617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 88 - 154
Target Start/End: Original strand, 4126088 - 4126154
Alignment:
Q  88 aaaatgtggaaatcacatcttgatgtgtgggttgctaaaagacacattcatgggtgacttctagcaa 154  Q
    |||| |||||||||||| ||||| |||||| || ||||||||||| ||||||| || ||||||||||    
T  4126088 aaaaagtggaaatcacaccttgaggtgtggattactaaaagacaccttcatggatggcttctagcaa 4126154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 88 - 154
Target Start/End: Original strand, 19228678 - 19228744
Alignment:
Q  88 aaaatgtggaaatcacatcttgatgtgtgggttgctaaaagacacattcatgggtgacttctagcaa 154  Q
    |||| ||| |||||||| ||||| ||||| ||| ||||||||||||||||| ||| |||||||||||    
T  19228678 aaaaagtgaaaatcacaccttgaagtgtgagtttctaaaagacacattcataggtcacttctagcaa 19228744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 88 - 150
Target Start/End: Complemental strand, 50090875 - 50090813
Alignment:
Q  88 aaaatgtggaaatcacatcttgatgtgtgggttgctaaaagacacattcatgggtgacttcta 150  Q
    |||| |||||||||||| ||| | |||||| |||||||||||||| ||||||| |||||||||    
T  50090875 aaaaagtggaaatcacaccttaaggtgtggattgctaaaagacaccttcatggatgacttcta 50090813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 88 - 154
Target Start/End: Original strand, 52945684 - 52945750
Alignment:
Q  88 aaaatgtggaaatcacatcttgatgtgtgggttgctaaaagacacattcatgggtgacttctagcaa 154  Q
    |||| ||||||||||||  |||| ||||| ||||||||||||||| ||||||| || ||||||||||    
T  52945684 aaaaagtggaaatcacactttgaggtgtgagttgctaaaagacaccttcatggatggcttctagcaa 52945750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 88 - 153
Target Start/End: Complemental strand, 5232659 - 5232594
Alignment:
Q  88 aaaatgtggaaatcacatcttgatgtgtgggttgctaaaagacacattcatgggtgacttctagca 153  Q
    |||| |||| ||||||| ||| | |||||||||||||||||||||||| || | ||||||||||||    
T  5232659 aaaaagtgggaatcacaccttaaggtgtgggttgctaaaagacacatttatagatgacttctagca 5232594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 88 - 153
Target Start/End: Original strand, 9665424 - 9665489
Alignment:
Q  88 aaaatgtggaaatcacatcttgatgtgtgggttgctaaaagacacattcatgggtgacttctagca 153  Q
    |||| ||| ||||||||  |||| || |||||||||||||||||||||||| |||| |||||||||    
T  9665424 aaaaagtgaaaatcacacattgaggtatgggttgctaaaagacacattcataggtggcttctagca 9665489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 88 - 153
Target Start/End: Complemental strand, 27038028 - 27037963
Alignment:
Q  88 aaaatgtggaaatcacatcttgatgtgtgggttgctaaaagacacattcatgggtgacttctagca 153  Q
    |||| |||||||||||  ||||| ||| ||||| ||||||||||| |||||||||| |||||||||    
T  27038028 aaaaagtggaaatcacgccttgaggtgggggtttctaaaagacaccttcatgggtggcttctagca 27037963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 88 - 154
Target Start/End: Complemental strand, 38101234 - 38101168
Alignment:
Q  88 aaaatgtggaaatcacatcttgatgtgtgggttgctaaaagacacattcatgggtgacttctagcaa 154  Q
    |||| |||||||||||| ||||| |||| ||||||||||| |||| |||||| ||| ||| ||||||    
T  38101234 aaaaagtggaaatcacaccttgaggtgtaggttgctaaaaaacactttcatgagtggcttatagcaa 38101168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 88 - 154
Target Start/End: Original strand, 39328527 - 39328593
Alignment:
Q  88 aaaatgtggaaatcacatcttgatgtgtgggttgctaaaagacacattcatgggtgacttctagcaa 154  Q
    |||| |||||||||||| ||||| |||||| ||| |||||||||| ||||| | || ||||||||||    
T  39328527 aaaaagtggaaatcacaccttgaggtgtggattgttaaaagacaccttcattgatggcttctagcaa 39328593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 153
Target Start/End: Original strand, 8674651 - 8674716
Alignment:
Q  88 aaaatgtggaaatcacatcttgatgtgtgggttgctaaaagacacattcatgggtgacttctagca 153  Q
    |||| |||||||||||| ||||| || ||  |||||||||||||| ||||||| || |||||||||    
T  8674651 aaaaagtggaaatcacaccttgaggtatgaattgctaaaagacaccttcatggatggcttctagca 8674716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 137
Target Start/End: Complemental strand, 20513076 - 20513027
Alignment:
Q  88 aaaatgtggaaatcacatcttgatgtgtgggttgctaaaagacacattca 137  Q
    |||| |||||||||||| ||||  |||||||||||||||||||| |||||    
T  20513076 aaaaagtggaaatcacaccttggagtgtgggttgctaaaagacatattca 20513027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 129
Target Start/End: Complemental strand, 39866835 - 39866794
Alignment:
Q  88 aaaatgtggaaatcacatcttgatgtgtgggttgctaaaaga 129  Q
    |||| |||||||||||| ||||| ||||||||||||||||||    
T  39866835 aaaaagtggaaatcacaccttgaggtgtgggttgctaaaaga 39866794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 110 - 154
Target Start/End: Original strand, 21482015 - 21482059
Alignment:
Q  110 atgtgtgggttgctaaaagacacattcatgggtgacttctagcaa 154  Q
    |||||||| |||||||||||||| |||||| ||| ||||||||||    
T  21482015 atgtgtggattgctaaaagacaccttcatgagtggcttctagcaa 21482059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 88 - 132
Target Start/End: Original strand, 45408361 - 45408405
Alignment:
Q  88 aaaatgtggaaatcacatcttgatgtgtgggttgctaaaagacac 132  Q
    |||| |||||||||||| ||||| ||||| |||||||||||||||    
T  45408361 aaaaagtggaaatcacaccttgaggtgtgcgttgctaaaagacac 45408405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 180 - 278
Target Start/End: Complemental strand, 47364030 - 47363933
Alignment:
Q  180 ttttaaaaaacggtccgttactaagaaaaaggttgcgacaaaaaagtataggtagcggacgttaccgtttttacagagtgaacaaaaatcacgtcgaaa 278  Q
    |||||||||||||||||||||  |||||||||   | || ||||||||||||||||||||||||||||||||| | |||| |||||||||||| |||||    
T  47364030 ttttaaaaaacggtccgttaccgagaaaaaggccaccac-aaaaagtataggtagcggacgttaccgtttttataaagtggacaaaaatcacgacgaaa 47363933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 88 - 154
Target Start/End: Original strand, 36343104 - 36343170
Alignment:
Q  88 aaaatgtggaaatcacatcttgatgtgtgggttgctaaaagacacattcatgggtgacttctagcaa 154  Q
    |||| |||||||||||||||||| |||||||||||||||| |||| ||||||| |||||||||||||    
T  36343104 aaaaagtggaaatcacatcttgaggtgtgggttgctaaaaaacaccttcatggatgacttctagcaa 36343170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 88 - 154
Target Start/End: Complemental strand, 41378412 - 41378346
Alignment:
Q  88 aaaatgtggaaatcacatcttgatgtgtgggttgctaaaagacacattcatgggtgacttctagcaa 154  Q
    |||| |||||||||||| ||||| ||||||||||||||||||||| |||||||||| ||||||||||    
T  41378412 aaaaagtggaaatcacaccttgaggtgtgggttgctaaaagacaccttcatgggtggcttctagcaa 41378346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 88 - 153
Target Start/End: Complemental strand, 41585920 - 41585855
Alignment:
Q  88 aaaatgtggaaatcacatcttgatgtgtgggttgctaaaagacacattcatgggtgacttctagca 153  Q
    |||| |||||||||||| ||||| ||||||||||||||||||||| |||||||||| |||||||||    
T  41585920 aaaaagtggaaatcacaccttgaggtgtgggttgctaaaagacaccttcatgggtggcttctagca 41585855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 88 - 159
Target Start/End: Complemental strand, 48227272 - 48227201
Alignment:
Q  88 aaaatgtggaaatcacatcttgatgtgtgggttgctaaaagacacattcatgggtgacttctagcaatactc 159  Q
    |||| |||||||||||| ||||| ||||||||||||||||||||| |||||| ||| |||||||||| ||||    
T  48227272 aaaaagtggaaatcacaccttgaagtgtgggttgctaaaagacaccttcatgagtggcttctagcaaaactc 48227201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 97 - 159
Target Start/End: Original strand, 3961300 - 3961362
Alignment:
Q  97 aaatcacatcttgatgtgtgggttgctaaaagacacattcatgggtgacttctagcaatactc 159  Q
    |||| ||||||||| ||||||||||||||||||||| ||||||||||||||||| ||| ||||    
T  3961300 aaatgacatcttgaggtgtgggttgctaaaagacaccttcatgggtgacttctatcaaaactc 3961362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 88 - 154
Target Start/End: Complemental strand, 26928006 - 26927940
Alignment:
Q  88 aaaatgtggaaatcacatcttgatgtgtgggttgctaaaagacacattcatgggtgacttctagcaa 154  Q
    |||| |||||||||||| ||||| ||||| ||||||||||||||| |||||||||| ||||||||||    
T  26928006 aaaaagtggaaatcacaccttgaggtgtgagttgctaaaagacaccttcatgggtggcttctagcaa 26927940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 88 - 154
Target Start/End: Complemental strand, 9522507 - 9522441
Alignment:
Q  88 aaaatgtggaaatcacatcttgatgtgtgggttgctaaaagacacattcatgggtgacttctagcaa 154  Q
    |||| |||||||||||| ||||| |||||| ||||||| |||||| |||||||||| ||||||||||    
T  9522507 aaaaagtggaaatcacaccttgaggtgtggattgctaagagacaccttcatgggtggcttctagcaa 9522441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 88 - 154
Target Start/End: Original strand, 41037239 - 41037305
Alignment:
Q  88 aaaatgtggaaatcacatcttgatgtgtgggttgctaaaagacacattcatgggtgacttctagcaa 154  Q
    |||| |||||||||||| |||||  ||||||||| |||||||||| ||||||| |||||||||||||    
T  41037239 aaaaagtggaaatcacaccttgagatgtgggttgttaaaagacaccttcatggatgacttctagcaa 41037305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 88 - 153
Target Start/End: Original strand, 21993584 - 21993649
Alignment:
Q  88 aaaatgtggaaatcacatcttgatgtgtgggttgctaaaagacacattcatgggtgacttctagca 153  Q
    |||| ||| |||||||| ||||| ||||||||||||||||||||  |||||||||| |||||||||    
T  21993584 aaaaagtgaaaatcacaccttgaggtgtgggttgctaaaagacaacttcatgggtggcttctagca 21993649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 106 - 154
Target Start/End: Complemental strand, 32392260 - 32392212
Alignment:
Q  106 cttgatgtgtgggttgctaaaagacacattcatgggtgacttctagcaa 154  Q
    ||||| ||||||||||||||||||||| |||||||||| ||||||||||    
T  32392260 cttgaggtgtgggttgctaaaagacaccttcatgggtggcttctagcaa 32392212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 88 - 159
Target Start/End: Complemental strand, 3203328 - 3203257
Alignment:
Q  88 aaaatgtggaaatcacatcttgatgtgtgggttgctaaaagacacattcatgggtgacttctagcaatactc 159  Q
    |||| ||| |||||||| ||||| ||||||||||||||||||||| ||||||| ||  ||||||||| ||||    
T  3203328 aaaaagtgaaaatcacaccttgaggtgtgggttgctaaaagacaccttcatggatggtttctagcaaaactc 3203257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 88 - 154
Target Start/End: Complemental strand, 5995093 - 5995027
Alignment:
Q  88 aaaatgtggaaatcacatcttgatgtgtgggttgctaaaagacacattcatgggtgacttctagcaa 154  Q
    |||| ||| |||||||| ||||| |||| | |||||||||||||| ||||||| |||||||||||||    
T  5995093 aaaaagtgtaaatcacaccttgaggtgtagattgctaaaagacaccttcatggatgacttctagcaa 5995027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 88 - 154
Target Start/End: Original strand, 24611530 - 24611596
Alignment:
Q  88 aaaatgtggaaatcacatcttgatgtgtgggttgctaaaagacacattcatgggtgacttctagcaa 154  Q
    |||| ||| ||||||||  |||| ||||||||||||||||||||| ||||| |||| ||||||||||    
T  24611530 aaaaagtgaaaatcacacattgaggtgtgggttgctaaaagacaccttcataggtggcttctagcaa 24611596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 88 - 154
Target Start/End: Complemental strand, 28333804 - 28333738
Alignment:
Q  88 aaaatgtggaaatcacatcttgatgtgtgggttgctaaaagacacattcatgggtgacttctagcaa 154  Q
    |||| ||| |||||||| ||||| |||| |||||||||||||||| |||||| ||| ||||||||||    
T  28333804 aaaaagtgaaaatcacaccttgacgtgttggttgctaaaagacaccttcatgagtggcttctagcaa 28333738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 88 - 154
Target Start/End: Original strand, 31953273 - 31953339
Alignment:
Q  88 aaaatgtggaaatcacatcttgatgtgtgggttgctaaaagacacattcatgggtgacttctagcaa 154  Q
    |||| |||||||||||| ||||| ||||| |||||||||||| ||||||||| |||  |||||||||    
T  31953273 aaaaagtggaaatcacaccttgaggtgtgtgttgctaaaagatacattcatgagtggtttctagcaa 31953339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 98 - 154
Target Start/End: Original strand, 27131121 - 27131177
Alignment:
Q  98 aatcacatcttgatgtgtgggttgctaaaagacacattcatgggtgacttctagcaa 154  Q
    ||||||| ||||| |||||| |||||||||||||| |||||| ||| ||||||||||    
T  27131121 aatcacaccttgaggtgtggattgctaaaagacaccttcatgtgtgtcttctagcaa 27131177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 106 - 154
Target Start/End: Complemental strand, 35221688 - 35221640
Alignment:
Q  106 cttgatgtgtgggttgctaaaagacacattcatgggtgacttctagcaa 154  Q
    ||||| ||||||||||||||||||||| ||||| |||| ||||||||||    
T  35221688 cttgaggtgtgggttgctaaaagacaccttcattggtggcttctagcaa 35221640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 88 - 151
Target Start/End: Original strand, 35983221 - 35983284
Alignment:
Q  88 aaaatgtggaaatcacatcttgatgtgtgggttgctaaaagacacattcatgggtgacttctag 151  Q
    |||| ||| |||||||| ||| | ||||||||||||||||||||| ||||| |||| |||||||    
T  35983221 aaaaagtgaaaatcacaccttaaggtgtgggttgctaaaagacaccttcataggtggcttctag 35983284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 88 - 151
Target Start/End: Original strand, 36004633 - 36004696
Alignment:
Q  88 aaaatgtggaaatcacatcttgatgtgtgggttgctaaaagacacattcatgggtgacttctag 151  Q
    |||| ||| |||||||| ||| | ||||||||||||||||||||| ||||| |||| |||||||    
T  36004633 aaaaagtgaaaatcacaccttaaggtgtgggttgctaaaagacaccttcataggtggcttctag 36004696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 88 - 154
Target Start/End: Original strand, 45100085 - 45100152
Alignment:
Q  88 aaaatgtggaaatcacatcttgatgtgtgggttgctaaaagacacattca-tgggtgacttctagcaa 154  Q
    |||| ||| |||||||||||||| | ||||||||||||||||||| |||| | |||| ||||||||||    
T  45100085 aaaaagtgtaaatcacatcttgaggcgtgggttgctaaaagacaccttcatttggtggcttctagcaa 45100152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 88 - 154
Target Start/End: Original strand, 14656568 - 14656634
Alignment:
Q  88 aaaatgtggaaatcacatcttgatgtgtgggttgctaaaagacacattcatgggtgacttctagcaa 154  Q
    |||| ||| ||||||||  |||| ||||||||| ||||||||||| |||||| ||| ||||||||||    
T  14656568 aaaaggtgaaaatcacacattgaggtgtgggtttctaaaagacaccttcatgagtggcttctagcaa 14656634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 88 - 154
Target Start/End: Complemental strand, 28059291 - 28059225
Alignment:
Q  88 aaaatgtggaaatcacatcttgatgtgtgggttgctaaaagacacattcatgggtgacttctagcaa 154  Q
    |||| ||||||||||||  || | ||||| ||||||||||||||| |||||  ||||||||||||||    
T  28059291 aaaaagtggaaatcacacattaaggtgtgagttgctaaaagacaccttcatatgtgacttctagcaa 28059225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 153
Target Start/End: Complemental strand, 3350055 - 3349990
Alignment:
Q  88 aaaatgtggaaatcacatcttgatgtgtgggttgctaaaagacacattcatgggtgacttctagca 153  Q
    |||| |||||||||||| |||||  ||||||||||||||| |||| || || |||| |||||||||    
T  3350055 aaaaagtggaaatcacaccttgagatgtgggttgctaaaaaacacttttataggtggcttctagca 3349990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 88 - 154
Target Start/End: Complemental strand, 1469737 - 1469671
Alignment:
Q  88 aaaatgtggaaatcacatcttgatgtgtgggttgctaaaagacacattcatgggtgacttctagcaa 154  Q
    |||| |||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||    
T  1469737 aaaaagtggaaatcacaccttgaggtgtgggttgctaaaagacacattcatgggtggcttctagcaa 1469671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 177 - 251
Target Start/End: Complemental strand, 32617930 - 32617856
Alignment:
Q  177 aggttttaaaaaacggtccgttactaagaaaaaggttgcgacaaaaaagtataggtagcggacgttaccgttttt 251  Q
    |||||||||||||||||| |||||  |||||||||  || ||||||| |||||||||||||||||||||||||||    
T  32617930 aggttttaaaaaacggtcggttaccgagaaaaaggccgccacaaaaaggtataggtagcggacgttaccgttttt 32617856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 178 - 251
Target Start/End: Original strand, 12990144 - 12990217
Alignment:
Q  178 ggttttaaaaaacggtccgttactaagaaaaaggttgcgacaaaaaagtataggtagcggacgttaccgttttt 251  Q
    |||||||||||||||| ||||||  ||||||||| ||||| ||||| |||||||||| ||||||||||||||||    
T  12990144 ggttttaaaaaacggttcgttaccgagaaaaaggctgcgataaaaaggtataggtagtggacgttaccgttttt 12990217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 88 - 153
Target Start/End: Complemental strand, 24992907 - 24992842
Alignment:
Q  88 aaaatgtggaaatcacatcttgatgtgtgggttgctaaaagacacattcatgggtgacttctagca 153  Q
    |||| |||||||||||| ||||| ||||||||||||||||||||| |||||||||| |||||||||    
T  24992907 aaaaagtggaaatcacaccttgaggtgtgggttgctaaaagacaccttcatgggtggcttctagca 24992842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 88 - 151
Target Start/End: Complemental strand, 1627717 - 1627654
Alignment:
Q  88 aaaatgtggaaatcacatcttgatgtgtgggttgctaaaagacacattcatgggtgacttctag 151  Q
    |||| |||||||||||| ||||| ||||||||| ||||||||||| ||||||||||||||||||    
T  1627717 aaaaagtggaaatcacaccttgaggtgtgggttactaaaagacaccttcatgggtgacttctag 1627654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 88 - 154
Target Start/End: Complemental strand, 25825340 - 25825274
Alignment:
Q  88 aaaatgtggaaatcacatcttgatgtgtgggttgctaaaagacacattcatgggtgacttctagcaa 154  Q
    |||| |||||||||||| ||||| ||||||||||||||||||||| ||||||| || ||||||||||    
T  25825340 aaaaagtggaaatcacaccttgaggtgtgggttgctaaaagacaccttcatggatggcttctagcaa 25825274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 18 - 90
Target Start/End: Original strand, 32848905 - 32848977
Alignment:
Q  18 tacactagccacatttaaatagaaaacaaactatatttaattttcataatataaccagatgaacaattccaaa 90  Q
    ||||||| ||||| | ||||||||||| |||  ||||||||||||||||||||||| | ||||||||||||||    
T  32848905 tacactaaccacactaaaatagaaaaccaacgttatttaattttcataatataaccggttgaacaattccaaa 32848977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 88 - 154
Target Start/End: Complemental strand, 1838702 - 1838636
Alignment:
Q  88 aaaatgtggaaatcacatcttgatgtgtgggttgctaaaagacacattcatgggtgacttctagcaa 154  Q
    |||| ||||||||||||  |||| ||||||||||||||||||||| |||||| ||| ||||||||||    
T  1838702 aaaaagtggaaatcacacattgaggtgtgggttgctaaaagacaccttcatgagtggcttctagcaa 1838636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 178 - 278
Target Start/End: Complemental strand, 14082056 - 14081955
Alignment:
Q  178 ggttttaaaaaacggtccgttactaagaaaaaggttgcgacaaaaaagtataggtagcggacgtta-ccgtttttacagagtgaacaaaaatcacgtcga 276  Q
    ||||||||||||||||| ||||| ||||||| ||   ||||||||||||||||||||   |||| | |||||| || |||||||| |||||||||| |||    
T  14082056 ggttttaaaaaacggtcagttaccaagaaaatggcctcgacaaaaaagtataggtagtcaacgtcacccgtttctatagagtgaataaaaatcacgacga 14081957  T
Q  277 aa 278  Q
    ||    
T  14081956 aa 14081955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 97 - 154
Target Start/End: Complemental strand, 15660909 - 15660852
Alignment:
Q  97 aaatcacatcttgatgtgtgggttgctaaaagacacattcatgggtgacttctagcaa 154  Q
    ||||||||  |||| ||||||||||||||||||||| |||||||||| ||||||||||    
T  15660909 aaatcacactttgaggtgtgggttgctaaaagacaccttcatgggtggcttctagcaa 15660852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 94 - 153
Target Start/End: Complemental strand, 30414138 - 30414079
Alignment:
Q  94 tggaaatcacatcttgatgtgtgggttgctaaaagacacattcatgggtgacttctagca 153  Q
    ||||||| ||| |||||  |||||||||||||||||||| |||||||||| |||||||||    
T  30414138 tggaaataacaccttgagatgtgggttgctaaaagacaccttcatgggtggcttctagca 30414079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 88 - 154
Target Start/End: Complemental strand, 8549604 - 8549538
Alignment:
Q  88 aaaatgtggaaatcacatcttgatgtgtgggttgctaaaagacacattcatgggtgacttctagcaa 154  Q
    |||| ||| |||||||| ||||| |||||| ||||||||| |||| ||||| |||||||||||||||    
T  8549604 aaaaagtgaaaatcacaccttgaggtgtggattgctaaaatacaccttcataggtgacttctagcaa 8549538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 177 - 251
Target Start/End: Original strand, 9457446 - 9457520
Alignment:
Q  177 aggttttaaaaaacggtccgttactaagaaaaaggttgcgacaaaaaagtataggtagcggacgttaccgttttt 251  Q
    ||||||||||||| ||| ||||||  || ||||||  |||||||||| ||||||| |||||||||| ||||||||    
T  9457446 aggttttaaaaaatggttcgttaccgagtaaaaggccgcgacaaaaaggtataggcagcggacgttgccgttttt 9457520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 177 - 251
Target Start/End: Original strand, 9461543 - 9461617
Alignment:
Q  177 aggttttaaaaaacggtccgttactaagaaaaaggttgcgacaaaaaagtataggtagcggacgttaccgttttt 251  Q
    ||||||||||||| ||| ||||||  || ||||||  |||||||||| ||||||| |||||||||| ||||||||    
T  9461543 aggttttaaaaaatggttcgttaccgagtaaaaggccgcgacaaaaaggtataggcagcggacgttgccgttttt 9461617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 94 - 153
Target Start/End: Original strand, 26842869 - 26842928
Alignment:
Q  94 tggaaatcacatcttgatgtgtgggttgctaaaagacacattcatgggtgacttctagca 153  Q
    |||||||||||  |||| ||||||||||||||||||| | || ||||||| |||||||||    
T  26842869 tggaaatcacacattgaggtgtgggttgctaaaagacgcctttatgggtggcttctagca 26842928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 96 - 159
Target Start/End: Complemental strand, 48875140 - 48875077
Alignment:
Q  96 gaaatcacatcttgatgtgtgggttgctaaaagacacattcatgggtgacttctagcaatactc 159  Q
    ||||||||| ||||| |||||||||||||||||| || || ||||||  |||||||||| ||||    
T  48875140 gaaatcacaacttgaggtgtgggttgctaaaagaaacctttatgggttgcttctagcaaaactc 48875077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 88 - 139
Target Start/End: Original strand, 49660402 - 49660453
Alignment:
Q  88 aaaatgtggaaatcacatcttgatgtgtgggttgctaaaagacacattcatg 139  Q
    |||| |||||||||||| ||||| ||||| ||||||||||||||| ||||||    
T  49660402 aaaaagtggaaatcacaacttgaggtgtgagttgctaaaagacaccttcatg 49660453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 88 - 154
Target Start/End: Complemental strand, 10769811 - 10769745
Alignment:
Q  88 aaaatgtggaaatcacatcttgatgtgtgggttgctaaaagacacattcatgggtgacttctagcaa 154  Q
    |||| |||||||||||| ||| | |||||| |||||| ||| ||| |||||||||| ||||||||||    
T  10769811 aaaaagtggaaatcacaccttcaggtgtggattgctataaggcaccttcatgggtggcttctagcaa 10769745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 88 - 150
Target Start/End: Complemental strand, 43939494 - 43939432
Alignment:
Q  88 aaaatgtggaaatcacatcttgatgtgtgggttgctaaaagacacattcatgggtgacttcta 150  Q
    |||| ||| |||||||| ||||| |||||| |||||||||||||| |||||| ||| ||||||    
T  43939494 aaaaagtgaaaatcacaccttgaggtgtggattgctaaaagacaccttcatgagtggcttcta 43939432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 153
Target Start/End: Original strand, 26897368 - 26897432
Alignment:
Q  88 aaaatgtggaaatcacatcttgatgtgtgggttgctaaaagacacattcatgggtgacttctagca 153  Q
    |||| |||||||||||| ||| | |||||| |||||||||| ||| |||||||||| |||||||||    
T  26897368 aaaaagtggaaatcacaccttaaggtgtgg-ttgctaaaagtcaccttcatgggtggcttctagca 26897432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 96 - 132
Target Start/End: Original strand, 9338847 - 9338883
Alignment:
Q  96 gaaatcacatcttgatgtgtgggttgctaaaagacac 132  Q
    ||||||||| ||||| |||||||||||||||||||||    
T  9338847 gaaatcacaccttgaagtgtgggttgctaaaagacac 9338883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 246 - 278
Target Start/End: Complemental strand, 24700058 - 24700026
Alignment:
Q  246 gtttttacagagtgaacaaaaatcacgtcgaaa 278  Q
    ||||||||||||||||||||||||||| |||||    
T  24700058 gtttttacagagtgaacaaaaatcacgacgaaa 24700026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 88 - 140
Target Start/End: Original strand, 42470615 - 42470667
Alignment:
Q  88 aaaatgtggaaatcacatcttgatgtgtgggttgctaaaagacacattcatgg 140  Q
    |||| |||||||||||| ||||| |||||  |||||||||||||| |||||||    
T  42470615 aaaaagtggaaatcacaccttgaggtgtgaattgctaaaagacaccttcatgg 42470667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 88 - 153
Target Start/End: Original strand, 18102559 - 18102624
Alignment:
Q  88 aaaatgtggaaatcacatcttgatgtgtgggttgctaaaagacacattcatgggtgacttctagca 153  Q
    |||| |||||||||||| ||||| ||||||||||||||||||||| ||||||||||||||||||||    
T  18102559 aaaaagtggaaatcacaccttgaggtgtgggttgctaaaagacaccttcatgggtgacttctagca 18102624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 188 - 272
Target Start/End: Original strand, 32296194 - 32296277
Alignment:
Q  188 aacggtccgttactaagaaaaaggttgcgacaaaaaagtataggtagcggacgttaccgtttttacagagtgaacaaaaatcacg 272  Q
    ||||||||||||| ||||||| | |||||||||||| |||||| || |  |||||||||||||||||||||||||||||||||||    
T  32296194 aacggtccgttaccaagaaaatgattgcgacaaaaaggtatagatacca-acgttaccgtttttacagagtgaacaaaaatcacg 32296277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 88 - 154
Target Start/End: Original strand, 15081235 - 15081301
Alignment:
Q  88 aaaatgtggaaatcacatcttgatgtgtgggttgctaaaagacacattcatgggtgacttctagcaa 154  Q
    |||| |||||||||||| ||||| ||||||||||||||||||||| |||||||||| ||||||||||    
T  15081235 aaaaagtggaaatcacaccttgaggtgtgggttgctaaaagacaccttcatgggtggcttctagcaa 15081301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 88 - 143
Target Start/End: Complemental strand, 12159490 - 12159435
Alignment:
Q  88 aaaatgtggaaatcacatcttgatgtgtgggttgctaaaagacacattcatgggtg 143  Q
    |||| ||| |||||||| ||||| ||||||||||||||||||||| ||||||||||    
T  12159490 aaaaagtgaaaatcacaccttgaggtgtgggttgctaaaagacaccttcatgggtg 12159435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 88 - 150
Target Start/End: Original strand, 10075107 - 10075169
Alignment:
Q  88 aaaatgtggaaatcacatcttgatgtgtgggttgctaaaagacacattcatgggtgacttcta 150  Q
    |||| |||||||||||| ||||| ||||| ||||||||||||||| || ||||||| ||||||    
T  10075107 aaaaagtggaaatcacaccttgaggtgtgagttgctaaaagacacctttatgggtggcttcta 10075169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 112 - 154
Target Start/End: Complemental strand, 14975424 - 14975382
Alignment:
Q  112 gtgtgggttgctaaaagacacattcatgggtgacttctagcaa 154  Q
    ||||||||||||||||||||| |||||||||| ||||||||||    
T  14975424 gtgtgggttgctaaaagacaccttcatgggtggcttctagcaa 14975382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 96 - 154
Target Start/End: Complemental strand, 19102118 - 19102060
Alignment:
Q  96 gaaatcacatcttgatgtgtgggttgctaaaagacacattcatgggtgacttctagcaa 154  Q
    ||||||||| ||||| |||||| |||||||||||||| ||||||  |||||||||||||    
T  19102118 gaaatcacaccttgaggtgtggattgctaaaagacaccttcatgtatgacttctagcaa 19102060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 88 - 154
Target Start/End: Complemental strand, 29427276 - 29427210
Alignment:
Q  88 aaaatgtggaaatcacatcttgatgtgtgggttgctaaaagacacattcatgggtgacttctagcaa 154  Q
    |||| |||||||||||| ||||| |||||| ||||||||| ||||||| |||| || ||||||||||    
T  29427276 aaaaagtggaaatcacaccttgaggtgtggattgctaaaaaacacatttatggctggcttctagcaa 29427210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 88 - 132
Target Start/End: Original strand, 18096439 - 18096483
Alignment:
Q  88 aaaatgtggaaatcacatcttgatgtgtgggttgctaaaagacac 132  Q
    |||| |||||||||||| ||||| |||||||||||||||||||||    
T  18096439 aaaaagtggaaatcacaccttgaggtgtgggttgctaaaagacac 18096483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 88 - 154
Target Start/End: Original strand, 6322604 - 6322670
Alignment:
Q  88 aaaatgtggaaatcacatcttgatgtgtgggttgctaaaagacacattcatgggtgacttctagcaa 154  Q
    |||| ||||||| |||| ||| | |||||| |||||||||||||| ||||||| || ||||||||||    
T  6322604 aaaaagtggaaaccacaccttaaggtgtggattgctaaaagacaccttcatggatggcttctagcaa 6322670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 88 - 154
Target Start/End: Original strand, 7190710 - 7190776
Alignment:
Q  88 aaaatgtggaaatcacatcttgatgtgtgggttgctaaaagacacattcatgggtgacttctagcaa 154  Q
    |||| ||| |||||||| ||| | |||||| |||||||||||||| |||||| ||| ||||||||||    
T  7190710 aaaaggtgaaaatcacaccttaaggtgtggtttgctaaaagacaccttcatgagtggcttctagcaa 7190776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 177 - 251
Target Start/End: Complemental strand, 8169310 - 8169237
Alignment:
Q  177 aggttttaaaaaacggtccgttactaagaaaaaggttgcgacaaaaaagtataggtagcggacgttaccgttttt 251  Q
    |||||||||||||| | |||||||  ||||||||||  |||| |||| ||||||||||  |||||||||||||||    
T  8169310 aggttttaaaaaactgcccgttaccgagaaaaaggtcacgac-aaaaggtataggtagtcgacgttaccgttttt 8169237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 7e-18; HSPs: 28)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 88 - 154
Target Start/End: Complemental strand, 16930846 - 16930780
Alignment:
Q  88 aaaatgtggaaatcacatcttgatgtgtgggttgctaaaagacacattcatgggtgacttctagcaa 154  Q
    |||| |||||||||||| ||||| |||||| |||||||||||||| |||||||||||||||||||||    
T  16930846 aaaaagtggaaatcacaccttgaggtgtggattgctaaaagacaccttcatgggtgacttctagcaa 16930780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 88 - 154
Target Start/End: Original strand, 19922625 - 19922691
Alignment:
Q  88 aaaatgtggaaatcacatcttgatgtgtgggttgctaaaagacacattcatgggtgacttctagcaa 154  Q
    |||| |||||||||||| ||||| ||||||||||||||||||||| |||||||||| ||||||||||    
T  19922625 aaaaggtggaaatcacaccttgaggtgtgggttgctaaaagacaccttcatgggtggcttctagcaa 19922691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 88 - 154
Target Start/End: Complemental strand, 3210909 - 3210843
Alignment:
Q  88 aaaatgtggaaatcacatcttgatgtgtgggttgctaaaagacacattcatgggtgacttctagcaa 154  Q
    |||| |||||||| ||| ||||| ||||||||||||||||||||| |||||||||| ||||||||||    
T  3210909 aaaaagtggaaataacaccttgaggtgtgggttgctaaaagacaccttcatgggtggcttctagcaa 3210843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 88 - 154
Target Start/End: Original strand, 10078416 - 10078482
Alignment:
Q  88 aaaatgtggaaatcacatcttgatgtgtgggttgctaaaagacacattcatgggtgacttctagcaa 154  Q
    |||| |||||||||||| ||||| ||||||||||||||||||||| ||| |||||| ||||||||||    
T  10078416 aaaaagtggaaatcacaccttgaggtgtgggttgctaaaagacaccttcttgggtggcttctagcaa 10078482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 88 - 154
Target Start/End: Complemental strand, 40067524 - 40067458
Alignment:
Q  88 aaaatgtggaaatcacatcttgatgtgtgggttgctaaaagacacattcatgggtgacttctagcaa 154  Q
    |||| |||||||||||| |||||  |||||||| ||||||||||  |||||||||||||||||||||    
T  40067524 aaaaagtggaaatcacaccttgagatgtgggttactaaaagacatcttcatgggtgacttctagcaa 40067458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 112 - 153
Target Start/End: Complemental strand, 12295177 - 12295136
Alignment:
Q  112 gtgtgggttgctaaaagacacattcatgggtgacttctagca 153  Q
    ||||||||||||||||||||| ||||||||||||||||||||    
T  12295177 gtgtgggttgctaaaagacaccttcatgggtgacttctagca 12295136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 179 - 251
Target Start/End: Complemental strand, 23490309 - 23490237
Alignment:
Q  179 gttttaaaaaacggtccgttactaagaaaaaggttgcgacaaaaaagtataggtagcggacgttaccgttttt 251  Q
    |||||||| ||| |||||||||| |||||||||  |||||||||| ||||||||||| || |||||| |||||    
T  23490309 gttttaaagaaccgtccgttactgagaaaaaggccgcgacaaaaaggtataggtagccgaagttaccattttt 23490237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 88 - 143
Target Start/End: Complemental strand, 22812364 - 22812309
Alignment:
Q  88 aaaatgtggaaatcacatcttgatgtgtgggttgctaaaagacacattcatgggtg 143  Q
    |||| ||| |||||||||||||| ||||||||||||||||| ||| ||||||||||    
T  22812364 aaaaagtgaaaatcacatcttgaggtgtgggttgctaaaaggcaccttcatgggtg 22812309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 88 - 154
Target Start/End: Complemental strand, 253992 - 253926
Alignment:
Q  88 aaaatgtggaaatcacatcttgatgtgtgggttgctaaaagacacattcatgggtgacttctagcaa 154  Q
    |||| ||| |||||||| ||||| |||| |||||||||||||||| ||||| ||||| |||||||||    
T  253992 aaaaagtgaaaatcacaccttgaggtgtaggttgctaaaagacaccttcataggtgaattctagcaa 253926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 88 - 154
Target Start/End: Original strand, 661866 - 661932
Alignment:
Q  88 aaaatgtggaaatcacatcttgatgtgtgggttgctaaaagacacattcatgggtgacttctagcaa 154  Q
    |||| ||| |||||||| ||||| |||| |||||||||||||||| ||||| ||||| |||||||||    
T  661866 aaaaagtgaaaatcacaccttgaggtgtaggttgctaaaagacaccttcataggtgaattctagcaa 661932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 88 - 154
Target Start/End: Original strand, 847664 - 847730
Alignment:
Q  88 aaaatgtggaaatcacatcttgatgtgtgggttgctaaaagacacattcatgggtgacttctagcaa 154  Q
    |||| ||| |||||||| ||||| |||| |||||||||||||||| ||||| ||||| |||||||||    
T  847664 aaaaagtgaaaatcacaccttgaggtgtaggttgctaaaagacaccttcataggtgaattctagcaa 847730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 177 - 235
Target Start/End: Complemental strand, 14867618 - 14867560
Alignment:
Q  177 aggttttaaaaaacggtccgttactaagaaaaaggttgcgacaaaaaagtataggtagc 235  Q
    ||||||||||||||||||||||||| |||||||||  |||||| |||  ||||||||||    
T  14867618 aggttttaaaaaacggtccgttactgagaaaaaggccgcgacagaaagatataggtagc 14867560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 88 - 154
Target Start/End: Original strand, 30774240 - 30774306
Alignment:
Q  88 aaaatgtggaaatcacatcttgatgtgtgggttgctaaaagacacattcatgggtgacttctagcaa 154  Q
    |||| |||||||||||| ||| | ||||||||||||||||||||| ||| || ||| ||||||||||    
T  30774240 aaaaagtggaaatcacaccttaaggtgtgggttgctaaaagacaccttcgtgagtggcttctagcaa 30774306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 97 - 151
Target Start/End: Complemental strand, 33568101 - 33568047
Alignment:
Q  97 aaatcacatcttgatgtgtgggttgctaaaagacacattcatgggtgacttctag 151  Q
    |||||||| ||||| |||||| ||||||||| |||| ||||||||||||||||||    
T  33568101 aaatcacaccttgaggtgtggattgctaaaaaacaccttcatgggtgacttctag 33568047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 88 - 153
Target Start/End: Original strand, 9478826 - 9478891
Alignment:
Q  88 aaaatgtggaaatcacatcttgatgtgtgggttgctaaaagacacattcatgggtgacttctagca 153  Q
    |||| ||||||||||||  |||| |||||||||||||||||| |  |||||||||| |||||||||    
T  9478826 aaaaagtggaaatcacactttgaggtgtgggttgctaaaagatatcttcatgggtggcttctagca 9478891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 88 - 149
Target Start/End: Complemental strand, 40067594 - 40067534
Alignment:
Q  88 aaaatgtggaaatcacatcttgatgtgtgggttgctaaaagacacattcatgggtgacttct 149  Q
    |||| |||||||||||||||||| ||||| |||||||||| |||||||| || |||||||||    
T  40067594 aaaaagtggaaatcacatcttgaggtgtgagttgctaaaaaacacattc-tgagtgacttct 40067534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 97 - 154
Target Start/End: Complemental strand, 41624684 - 41624627
Alignment:
Q  97 aaatcacatcttgatgtgtgggttgctaaaagacacattcatgggtgacttctagcaa 154  Q
    |||||||| ||||| ||||| ||||||||||||||| |||||||||| ||| ||||||    
T  41624684 aaatcacaccttgaggtgtgagttgctaaaagacactttcatgggtggcttatagcaa 41624627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 88 - 140
Target Start/End: Original strand, 42806326 - 42806378
Alignment:
Q  88 aaaatgtggaaatcacatcttgatgtgtgggttgctaaaagacacattcatgg 140  Q
    |||| |||||||||||| ||||| |||||| |||||||||||||| |||||||    
T  42806326 aaaaagtggaaatcacaccttgaggtgtggattgctaaaagacactttcatgg 42806378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 88 - 139
Target Start/End: Complemental strand, 16645522 - 16645471
Alignment:
Q  88 aaaatgtggaaatcacatcttgatgtgtgggttgctaaaagacacattcatg 139  Q
    |||| |||||||||||| ||||| || |||||||||||||||||| ||||||    
T  16645522 aaaaagtggaaatcacaccttgaggtatgggttgctaaaagacaccttcatg 16645471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 94 - 153
Target Start/End: Original strand, 16784444 - 16784502
Alignment:
Q  94 tggaaatcacatcttgatgtgtgggttgctaaaagacacattcatgggtgacttctagca 153  Q
    ||||||||||| ||||| |||||||||||||||| |||| ||||||| || |||||||||    
T  16784444 tggaaatcacaccttgaggtgtgggttgctaaaa-acaccttcatggatggcttctagca 16784502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 88 - 154
Target Start/End: Complemental strand, 44508947 - 44508881
Alignment:
Q  88 aaaatgtggaaatcacatcttgatgtgtgggttgctaaaagacacattcatgggtgacttctagcaa 154  Q
    |||| ||| |||||||| ||||| || || ||||||||||||||| |||||||||| |||| |||||    
T  44508947 aaaaggtgaaaatcacaccttgaggtatgagttgctaaaagacaccttcatgggtggcttccagcaa 44508881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 143
Target Start/End: Complemental strand, 12176238 - 12176193
Alignment:
Q  98 aatcacatcttgatgtgtgggttgctaaaagacacattcatgggtg 143  Q
    ||||||| ||||| |||||| |||||||||||||| ||||||||||    
T  12176238 aatcacaccttgaggtgtggattgctaaaagacaccttcatgggtg 12176193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 143
Target Start/End: Complemental strand, 12420666 - 12420621
Alignment:
Q  98 aatcacatcttgatgtgtgggttgctaaaagacacattcatgggtg 143  Q
    ||||||| ||||| |||||| |||||||||||||| ||||||||||    
T  12420666 aatcacaccttgaggtgtggattgctaaaagacaccttcatgggtg 12420621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 154
Target Start/End: Complemental strand, 26912355 - 26912299
Alignment:
Q  97 aaatcacatcttgatgtgtgggttgctaaaagacacattcatgggtgacttctagcaa 154  Q
    |||||||| ||||| |||||||||||||||| |||| |||||||||| ||| ||||||    
T  26912355 aaatcacaccttgaggtgtgggttgctaaaa-acaccttcatgggtggcttttagcaa 26912299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 113 - 154
Target Start/End: Original strand, 28539303 - 28539344
Alignment:
Q  113 tgtgggttgctaaaagacacattcatgggtgacttctagcaa 154  Q
    |||||||||||||||||||| ||||| |||| ||||||||||    
T  28539303 tgtgggttgctaaaagacaccttcataggtggcttctagcaa 28539344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 153
Target Start/End: Original strand, 44874052 - 44874093
Alignment:
Q  112 gtgtgggttgctaaaagacacattcatgggtgacttctagca 153  Q
    |||||| |||||||||||||| |||||||||| |||||||||    
T  44874052 gtgtggattgctaaaagacaccttcatgggtggcttctagca 44874093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 246 - 278
Target Start/End: Complemental strand, 10473911 - 10473879
Alignment:
Q  246 gtttttacagagtgaacaaaaatcacgtcgaaa 278  Q
    ||||||||||||||||||||||||||| |||||    
T  10473911 gtttttacagagtgaacaaaaatcacgacgaaa 10473879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 88 - 132
Target Start/End: Complemental strand, 28969142 - 28969098
Alignment:
Q  88 aaaatgtggaaatcacatcttgatgtgtgggttgctaaaagacac 132  Q
    |||| |||||||||||| ||||| |||||||||||||||| ||||    
T  28969142 aaaaagtggaaatcacaccttgaagtgtgggttgctaaaatacac 28969098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 7e-18; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 88 - 154
Target Start/End: Complemental strand, 32626107 - 32626041
Alignment:
Q  88 aaaatgtggaaatcacatcttgatgtgtgggttgctaaaagacacattcatgggtgacttctagcaa 154  Q
    |||| |||||||||||| ||||| ||||||||||||||||||||| |||||||||| ||||||||||    
T  32626107 aaaaagtggaaatcacaccttgaggtgtgggttgctaaaagacaccttcatgggtggcttctagcaa 32626041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 88 - 154
Target Start/End: Complemental strand, 34728265 - 34728199
Alignment:
Q  88 aaaatgtggaaatcacatcttgatgtgtgggttgctaaaagacacattcatgggtgacttctagcaa 154  Q
    |||| |||||||||||| ||||| ||||||||||||||||||||| |||||||||| ||||||||||    
T  34728265 aaaaagtggaaatcacaccttgaggtgtgggttgctaaaagacaccttcatgggtggcttctagcaa 34728199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 177 - 278
Target Start/End: Complemental strand, 55606598 - 55606497
Alignment:
Q  177 aggttttaaaaaacggtccgttactaagaaaaaggttgcgacaaaaaagtataggtagcggacgttaccgttttt-acagagtgaacaaaaatcacgtcg 275  Q
    ||||| |||||||| |||||||||  |||||||||   ||||||||| |||||||||| |||||||||||||||| || |||||||||||||||||| ||    
T  55606598 aggttctaaaaaacagtccgttaccgagaaaaaggcc-cgacaaaaaggtataggtagtggacgttaccgtttttcactgagtgaacaaaaatcacgacg 55606500  T
Q  276 aaa 278  Q
    |||    
T  55606499 aaa 55606497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 177 - 250
Target Start/End: Original strand, 25967801 - 25967874
Alignment:
Q  177 aggttttaaaaaacggtccgttactaagaaaaaggttgcgacaaaaaagtataggtagcggacgttaccgtttt 250  Q
    ||||||||||| | ||||||||||  |||| |||| ||||||||||| ||||||||||||||||||||||||||    
T  25967801 aggttttaaaatatggtccgttaccgagaataaggctgcgacaaaaaggtataggtagcggacgttaccgtttt 25967874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 177 - 251
Target Start/End: Original strand, 28146787 - 28146861
Alignment:
Q  177 aggttttaaaaaacggtccgttactaagaaaaaggttgcgacaaaaaagtataggtagcggacgttaccgttttt 251  Q
    |||||||||||||||||| |||||  |||||||||  || ||||||| ||||||||||||||| |||||||||||    
T  28146787 aggttttaaaaaacggtctgttacggagaaaaaggccgcaacaaaaaggtataggtagcggacattaccgttttt 28146861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 88 - 154
Target Start/End: Complemental strand, 51682604 - 51682538
Alignment:
Q  88 aaaatgtggaaatcacatcttgatgtgtgggttgctaaaagacacattcatgggtgacttctagcaa 154  Q
    |||| |||||||||||| ||||| ||||||||||||||||||||| |||||| ||| ||||||||||    
T  51682604 aaaaagtggaaatcacaccttgaggtgtgggttgctaaaagacaccttcatgagtggcttctagcaa 51682538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 88 - 153
Target Start/End: Original strand, 40479961 - 40480026
Alignment:
Q  88 aaaatgtggaaatcacatcttgatgtgtgggttgctaaaagacacattcatgggtgacttctagca 153  Q
    |||| |||||||||||| ||||| | ||| ||||||||||||||| ||||||||||||||||||||    
T  40479961 aaaaagtggaaatcacaccttgaggcgtgagttgctaaaagacaccttcatgggtgacttctagca 40480026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 94 - 153
Target Start/End: Original strand, 20835827 - 20835886
Alignment:
Q  94 tggaaatcacatcttgatgtgtgggttgctaaaagacacattcatgggtgacttctagca 153  Q
    ||||||||||  ||||| ||||||||||||||||||||| |||||||||| |||||||||    
T  20835827 tggaaatcaccccttgaggtgtgggttgctaaaagacaccttcatgggtggcttctagca 20835886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 88 - 154
Target Start/End: Original strand, 27907104 - 27907170
Alignment:
Q  88 aaaatgtggaaatcacatcttgatgtgtgggttgctaaaagacacattcatgggtgacttctagcaa 154  Q
    |||| |||||||||||| ||||| ||||||| ||||||||||||| |||||||||| ||| ||||||    
T  27907104 aaaaagtggaaatcacaccttgaggtgtgggctgctaaaagacaccttcatgggtggcttatagcaa 27907170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 88 - 154
Target Start/End: Complemental strand, 34041237 - 34041171
Alignment:
Q  88 aaaatgtggaaatcacatcttgatgtgtgggttgctaaaagacacattcatgggtgacttctagcaa 154  Q
    |||| ||| |||||||| ||||| ||||||||||||||||||||| ||||||| || ||||||||||    
T  34041237 aaaaagtgaaaatcacaacttgaggtgtgggttgctaaaagacaccttcatggatggcttctagcaa 34041171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 98 - 154
Target Start/End: Complemental strand, 43837725 - 43837669
Alignment:
Q  98 aatcacatcttgatgtgtgggttgctaaaagacacattcatgggtgacttctagcaa 154  Q
    ||||||| ||||| |||||| |||||||||||||| |||||||||| ||||||||||    
T  43837725 aatcacaccttgaggtgtggattgctaaaagacaccttcatgggtggcttctagcaa 43837669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 88 - 152
Target Start/End: Original strand, 51702571 - 51702635
Alignment:
Q  88 aaaatgtggaaatcacatcttgatgtgtgggttgctaaaagacacattcatgggtgacttctagc 152  Q
    |||| |||||||||||| ||||| ||||||||||||||||||||| |||||  ||| ||||||||    
T  51702571 aaaaagtggaaatcacaccttgaggtgtgggttgctaaaagacaccttcataagtggcttctagc 51702635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 88 - 154
Target Start/End: Complemental strand, 7645927 - 7645861
Alignment:
Q  88 aaaatgtggaaatcacatcttgatgtgtgggttgctaaaagacacattcatgggtgacttctagcaa 154  Q
    |||| ||| |||||||| |||||   ||||||||||||||||||||||||| |||| ||||||||||    
T  7645927 aaaaagtgaaaatcacaccttgagccgtgggttgctaaaagacacattcattggtggcttctagcaa 7645861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 88 - 154
Target Start/End: Original strand, 20503547 - 20503613
Alignment:
Q  88 aaaatgtggaaatcacatcttgatgtgtgggttgctaaaagacacattcatgggtgacttctagcaa 154  Q
    |||| |||||||||||| ||||| | |||||||||||||| |||| |||||| ||| ||||||||||    
T  20503547 aaaaagtggaaatcacaccttgaggcgtgggttgctaaaaaacaccttcatgagtggcttctagcaa 20503613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 177 - 270
Target Start/End: Complemental strand, 38412227 - 38412128
Alignment:
Q  177 aggttttaaaaaacggtccgttactaagaaaaaggttgcgacaaaaaagtataggtagcggac-------gttaccgtttttacagagtgaacaaaaatc 269  Q
    ||||||||||||| ||||| ||||  |||||||||  |||||||||| ||||||||||| |||       ||||||||||| ||||||||||||||||||    
T  38412227 aggttttaaaaaatggtccattaccgagaaaaaggcggcgacaaaaa-gtataggtagccgacgttaccggttaccgttttcacagagtgaacaaaaatc 38412129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 88 - 154
Target Start/End: Complemental strand, 42434274 - 42434208
Alignment:
Q  88 aaaatgtggaaatcacatcttgatgtgtgggttgctaaaagacacattcatgggtgacttctagcaa 154  Q
    |||| ||| |||||||| ||||| ||||||  ||||||||||||| |||||||||| ||||||||||    
T  42434274 aaaaagtgaaaatcacaccttgaggtgtggaatgctaaaagacactttcatgggtggcttctagcaa 42434208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 88 - 153
Target Start/End: Original strand, 6137374 - 6137439
Alignment:
Q  88 aaaatgtggaaatcacatcttgatgtgtgggttgctaaaagacacattcatgggtgacttctagca 153  Q
    |||| ||||||||||||  |||| ||||| ||||||||||||||| |||||| ||| |||||||||    
T  6137374 aaaaagtggaaatcacacattgaggtgtgagttgctaaaagacaccttcatgagtggcttctagca 6137439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 88 - 154
Target Start/End: Complemental strand, 32090008 - 32089942
Alignment:
Q  88 aaaatgtggaaatcacatcttgatgtgtgggttgctaaaagacacattcatgggtgacttctagcaa 154  Q
    |||| ||| |||||||| || || ||||||||||||||||||||  ||||||| || ||||||||||    
T  32090008 aaaaagtgaaaatcacacctcgaggtgtgggttgctaaaagacatcttcatggatggcttctagcaa 32089942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 272
Target Start/End: Original strand, 28146863 - 28146892
Alignment:
Q  243 accgtttttacagagtgaacaaaaatcacg 272  Q
    ||||||||||||||||||||||||||||||    
T  28146863 accgtttttacagagtgaacaaaaatcacg 28146892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 88 - 132
Target Start/End: Complemental strand, 11020393 - 11020349
Alignment:
Q  88 aaaatgtggaaatcacatcttgatgtgtgggttgctaaaagacac 132  Q
    |||| |||||||||||| |||||  ||||||||||||||||||||    
T  11020393 aaaaagtggaaatcacaccttgagatgtgggttgctaaaagacac 11020349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 88 - 156
Target Start/End: Original strand, 32868099 - 32868167
Alignment:
Q  88 aaaatgtggaaatcacatcttgatgtgtgggttgctaaaagacacattcatgggtgacttctagcaata 156  Q
    |||| ||| |||||||| ||||| |||||| || |||||||| || ||||||| || ||||||||||||    
T  32868099 aaaaagtgaaaatcacaccttgaggtgtggattactaaaagataccttcatggatggcttctagcaata 32868167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 106 - 154
Target Start/End: Complemental strand, 47960322 - 47960274
Alignment:
Q  106 cttgatgtgtgggttgctaaaagacacattcatgggtgacttctagcaa 154  Q
    ||||| |||||  |||||||||||||| ||||||| |||||||||||||    
T  47960322 cttgaggtgtgaattgctaaaagacactttcatggatgacttctagcaa 47960274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 88 - 154
Target Start/End: Complemental strand, 94851 - 94785
Alignment:
Q  88 aaaatgtggaaatcacatcttgatgtgtgggttgctaaaagacacattcatgggtgacttctagcaa 154  Q
    |||| |||||||||||| ||||| ||||||||||||||||||||| ||||||| || ||||||||||    
T  94851 aaaaagtggaaatcacaccttgaggtgtgggttgctaaaagacaccttcatggatggcttctagcaa 94785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0246 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold0246
Description:

Target: scaffold0246; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 88 - 153
Target Start/End: Original strand, 17900 - 17965
Alignment:
Q  88 aaaatgtggaaatcacatcttgatgtgtgggttgctaaaagacacattcatgggtgacttctagca 153  Q
    |||| |||||||||||| ||||| | ||| ||||||||||||||| ||||||||||||||||||||    
T  17900 aaaaagtggaaatcacaccttgaggcgtgagttgctaaaagacaccttcatgggtgacttctagca 17965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 88 - 154
Target Start/End: Complemental strand, 8570 - 8504
Alignment:
Q  88 aaaatgtggaaatcacatcttgatgtgtgggttgctaaaagacacattcatgggtgacttctagcaa 154  Q
    |||| |||||||||||| ||| | |||||| |||||||||||||| |||||||||| ||||||||||    
T  8570 aaaaagtggaaatcacaccttcaggtgtggattgctaaaagacaccttcatgggtggcttctagcaa 8504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 88 - 154
Target Start/End: Original strand, 75037 - 75103
Alignment:
Q  88 aaaatgtggaaatcacatcttgatgtgtgggttgctaaaagacacattcatgggtgacttctagcaa 154  Q
    |||| |||||||||||| ||||  || ||||||||||||| |||| |||||||||| ||||||||||    
T  75037 aaaaagtggaaatcacaccttggggtatgggttgctaaaatacaccttcatgggtggcttctagcaa 75103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 88 - 154
Target Start/End: Original strand, 392520 - 392586
Alignment:
Q  88 aaaatgtggaaatcacatcttgatgtgtgggttgctaaaagacacattcatgggtgacttctagcaa 154  Q
    |||| |||||||||||| ||| | ||||||||||||||||||||| ||| | |||| ||||||||||    
T  392520 aaaaagtggaaatcacaccttaaggtgtgggttgctaaaagacaccttcgtaggtggcttctagcaa 392586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0989 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0989
Description:

Target: scaffold0989; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 179 - 251
Target Start/End: Complemental strand, 2165 - 2093
Alignment:
Q  179 gttttaaaaaacggtccgttactaagaaaaaggttgcgacaaaaaagtataggtagcggacgttaccgttttt 251  Q
    |||||||||||||||| |||||  |||||||||  ||||||||||  ||  | ||||||||||||||||||||    
T  2165 gttttaaaaaacggtctgttaccgagaaaaaggccgcgacaaaaagttaatgatagcggacgttaccgttttt 2093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0093 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0093
Description:

Target: scaffold0093; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 88 - 154
Target Start/End: Original strand, 9265 - 9331
Alignment:
Q  88 aaaatgtggaaatcacatcttgatgtgtgggttgctaaaagacacattcatgggtgacttctagcaa 154  Q
    |||| |||||||||||| ||||| |||||| |||| ||||||||| ||||||| || ||| ||||||    
T  9265 aaaaagtggaaatcacaccttgaggtgtggattgcgaaaagacaccttcatggatggcttatagcaa 9331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University