View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2252_high_1 (Length: 688)

Name: NF2252_high_1
Description: NF2252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2252_high_1
NF2252_high_1
[»] chr5 (3 HSPs)
chr5 (311-611)||(17797341-17797641)
chr5 (313-611)||(17793045-17793343)
chr5 (1-306)||(14902731-14903046)
[»] chr1 (3 HSPs)
chr1 (311-611)||(26404852-26405152)
chr1 (313-623)||(28914199-28914509)
chr1 (313-611)||(26400556-26400854)
[»] chr6 (2 HSPs)
chr6 (311-611)||(7033623-7033923)
chr6 (311-611)||(7037923-7038223)
[»] chr4 (2 HSPs)
chr4 (311-611)||(1545219-1545519)
chr4 (311-611)||(1540921-1541221)
[»] chr7 (1 HSPs)
chr7 (311-675)||(30505766-30506128)


Alignment Details
Target: chr5 (Bit Score: 293; Significance: 1e-164; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 311 - 611
Target Start/End: Original strand, 17797341 - 17797641
Alignment:
Q  311 agtgttaactattgtgtttagaactgctgccacgtttgctgagttcattttaattatgttttgaatattttaaatatgttctcctaatttctagttcagt 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  17797341 agtgttaactattgtgtttagaactgctgccacgtttgctgagttcattttaattctgttttgaatattttaaatatgttctcctaatttctagttcagt 17797440  T
Q  411 tttatttcctccttgttttcagcaatcagtttaactctagtattctatcgtggcctaacttataggaacatgatattagtgggcagttattgtctattct 510  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17797441 tttatttcctccttgttttcagcaatcagtttaactctagtattctatcgtggcctaacttataggaacatgatattagtgggcagttattgtctattct 17797540  T
Q  511 gtacttttctatttgtacgtttgaattgaataagaaatttactcttcttccacttgttctagcaaccacctttaatcttttcctctgcaactttacaaaa 610  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17797541 gtacttttctatttgtacgtttgaattgaataacaaatttactcttcttccacttgttctagcaaccacctttaatcttttcctctgcaactttacaaaa 17797640  T
Q  611 t 611  Q
    |    
T  17797641 t 17797641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 313 - 611
Target Start/End: Original strand, 17793045 - 17793343
Alignment:
Q  313 tgttaactattgtgtttagaactgctgccacgtttgctgagttcattttaattatgttttgaatattttaaatatgttctcctaatttctagttcagttt 412  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  17793045 tgttaactattgtgtttagaactgctgccacgtttgctgagttcattttaattctgttttgaatattttaaatatgttctcctaatttctagttcagttt 17793144  T
Q  413 tatttcctccttgttttcagcaatcagtttaactctagtattctatcgtggcctaacttataggaacatgatattagtgggcagttattgtctattctgt 512  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17793145 tatttcctccttgttttcagcaatcagtttaactctagtattctatcgtggcctaacttataggaacatgatattagtgggcagttattgtctattctgt 17793244  T
Q  513 acttttctatttgtacgtttgaattgaataagaaatttactcttcttccacttgttctagcaaccacctttaatcttttcctctgcaactttacaaaat 611  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17793245 acttttctatttgtacgtttgaattgaataacaaatttactcttcttccacttgttctagcaaccacctttaatcttttcctctgcaactttacaaaat 17793343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 306
Target Start/End: Complemental strand, 14903046 - 14902731
Alignment:
Q  1 gattaacaagttatactgaaatgaattatagcctctaacccgatttttgttccagtcacaggcttaccaaacagcttaaatgaatatttttagagcatag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  14903046 gattaacaagttatactgaaatgaattatagcctctaacccgatttttgttccagtcacaggcttaccaaacagcttaaatgaatatttttagtgcatag 14902947  T
Q  101 aattgaaaaatatatacatgtttaagaacagttcgtagtgtacactatctaaattttatcatctgaagagcgcacatgtttataagacagtggcaaacaa 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  14902946 aattgaaaaatatatacatgtttaagaacagttcgtagtgtacactatctaaattttatcatctgaagagagcacatgtttataagacagtggcaaacaa 14902847  T
Q  201 acacagactactgtgaacctta--------tcatt--aaacgagtttgattatattatttcaaaaaatgtaaccaatattttataaacggacataatttt 290  Q
    ||||||||||||||||||||||         ||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14902846 acacagactactgtgaaccttagtttaagtccatttaaaacgagtttgattatattatttcaaaaaatgtaaccaatattttataaacggacataatttt 14902747  T
Q  291 acattaactcacattc 306  Q
    ||||||||||||||||    
T  14902746 acattaactcacattc 14902731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 289; Significance: 1e-162; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 311 - 611
Target Start/End: Original strand, 26404852 - 26405152
Alignment:
Q  311 agtgttaactattgtgtttagaactgctgccacgtttgctgagttcattttaattatgttttgaatattttaaatatgttctcctaatttctagttcagt 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  26404852 agtgttaactattgtgtttagaactgctgccacgtttgctgagttcattttaattctgttttgaatattttaaatatgttctcctaatttctagttcagt 26404951  T
Q  411 tttatttcctccttgttttcagcaatcagtttaactctagtattctatcgtggcctaacttataggaacatgatattagtgggcagttattgtctattct 510  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  26404952 tttatttcctccttgttttcagcaatcagtttaattctagtattctatcgtggcctaacttataggaacatgatattagtgggcagttattttctattct 26405051  T
Q  511 gtacttttctatttgtacgtttgaattgaataagaaatttactcttcttccacttgttctagcaaccacctttaatcttttcctctgcaactttacaaaa 610  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26405052 gtacttttctatttgtacgtttgaattgaataagaaatttactcttcttccacttgttctagcaaccacctttaatcttttcctctgcaactttacaaaa 26405151  T
Q  611 t 611  Q
    |    
T  26405152 t 26405152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 287; E-Value: 1e-160
Query Start/End: Original strand, 313 - 623
Target Start/End: Original strand, 28914199 - 28914509
Alignment:
Q  313 tgttaactattgtgtttagaactgctgccacgtttgctgagttcattttaattatgttttgaatattttaaatatgttctcctaatttctagttcagttt 412  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  28914199 tgttaactattgtgtttagaactgctgccacgtttgctgagttcattttaattctgttttgaatattttaaatatgttctcctaatttctagttcagttt 28914298  T
Q  413 tatttcctccttgttttcagcaatcagtttaactctagtattctatcgtggcctaacttataggaacatgatattagtgggcagttattgtctattctgt 512  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  28914299 tatttcctccttgttttcagcaatcagtttaattctagtattctatcgtggcctaacttataggaacatgatattagtgggcagttattttctattctgt 28914398  T
Q  513 acttttctatttgtacgtttgaattgaataagaaatttactcttcttccacttgttctagcaaccacctttaatcttttcctctgcaactttacaaaata 612  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  28914399 acttttctatttgtacgtttgaattgaataagaattttactcttcttccacttgttctagcaaccacctttaatcttttcctctgcaactttacaaaatc 28914498  T
Q  613 acaacagtttc 623  Q
    | |||||||||    
T  28914499 ataacagtttc 28914509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 313 - 611
Target Start/End: Original strand, 26400556 - 26400854
Alignment:
Q  313 tgttaactattgtgtttagaactgctgccacgtttgctgagttcattttaattatgttttgaatattttaaatatgttctcctaatttctagttcagttt 412  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||    
T  26400556 tgttaactattgtgtttagaactgctgccacgtttgctgagttcattttaattctattttgaatattttaaatatgttctcctaatttctagttcagttt 26400655  T
Q  413 tatttcctccttgttttcagcaatcagtttaactctagtattctatcgtggcctaacttataggaacatgatattagtgggcagttattgtctattctgt 512  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  26400656 tatttcctccttgttttcagcaatcagtttaattctagtattctatcgtggcctaacttataggaacatgatattagtgggcagttattttctattctgt 26400755  T
Q  513 acttttctatttgtacgtttgaattgaataagaaatttactcttcttccacttgttctagcaaccacctttaatcttttcctctgcaactttacaaaat 611  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26400756 acttttctatttgtacgtttgaattgaataagaaatttactcttcttccacttgttctagcaaccacctttaatcttttcctctgcaactttacaaaat 26400854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 285; Significance: 1e-159; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 311 - 611
Target Start/End: Original strand, 7033623 - 7033923
Alignment:
Q  311 agtgttaactattgtgtttagaactgctgccacgtttgctgagttcattttaattatgttttgaatattttaaatatgttctcctaatttctagttcagt 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  7033623 agtgttaactattgtgtttagaactgctgccacgtttgctgagttcattttaattctgttttgaatattttaaatatgttctcctaatttctagttcagt 7033722  T
Q  411 tttatttcctccttgttttcagcaatcagtttaactctagtattctatcgtggcctaacttataggaacatgatattagtgggcagttattgtctattct 510  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  7033723 tttatttcctccttgttttcagcaatcagtttaattctagtattctatcgtggcctaacttataggaacatgatattagtgggcagttattttctattct 7033822  T
Q  511 gtacttttctatttgtacgtttgaattgaataagaaatttactcttcttccacttgttctagcaaccacctttaatcttttcctctgcaactttacaaaa 610  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7033823 gtacttttctatttgtacgtttgaattgaataagaaatttacttttcttccacttgttctagcaaccacctttaatcttttcctctgcaactttacaaaa 7033922  T
Q  611 t 611  Q
    |    
T  7033923 t 7033923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 311 - 611
Target Start/End: Original strand, 7037923 - 7038223
Alignment:
Q  311 agtgttaactattgtgtttagaactgctgccacgtttgctgagttcattttaattatgttttgaatattttaaatatgttctcctaatttctagttcagt 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  7037923 agtgttaactattgtgtttagaactgctgccacgtttgctgagttcattttaattctgttttgaatattttaaatatgttctcctaatttctagttcagt 7038022  T
Q  411 tttatttcctccttgttttcagcaatcagtttaactctagtattctatcgtggcctaacttataggaacatgatattagtgggcagttattgtctattct 510  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  7038023 tttatttcctccttgttttcagcaatcagtttaattctagtattctattgtggcctaacttataggaacatgatattagtgggcagttattttctattct 7038122  T
Q  511 gtacttttctatttgtacgtttgaattgaataagaaatttactcttcttccacttgttctagcaaccacctttaatcttttcctctgcaactttacaaaa 610  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7038123 gtacttttctatttgtacgtttgaattgaataagaaatttactcttcttccacttgttctagcaaccacctttaatcttttcctctgcaactttacaaaa 7038222  T
Q  611 t 611  Q
    |    
T  7038223 t 7038223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 285; Significance: 1e-159; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 311 - 611
Target Start/End: Original strand, 1545219 - 1545519
Alignment:
Q  311 agtgttaactattgtgtttagaactgctgccacgtttgctgagttcattttaattatgttttgaatattttaaatatgttctcctaatttctagttcagt 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  1545219 agtgttaactattgtgtttagaactgctgccacgtttgctgagttcattttaattctgttttgaatattttaaatatgttctcctaatttctagttcagt 1545318  T
Q  411 tttatttcctccttgttttcagcaatcagtttaactctagtattctatcgtggcctaacttataggaacatgatattagtgggcagttattgtctattct 510  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  1545319 tttatttcctccttgttttcagcaatcagtttaattctagtattctatcgtggcctaacttataggaacatgatattagtgggcagttattttctattct 1545418  T
Q  511 gtacttttctatttgtacgtttgaattgaataagaaatttactcttcttccacttgttctagcaaccacctttaatcttttcctctgcaactttacaaaa 610  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1545419 gtacttttctatttgtacgtttgaattgaataagaaatttacttttcttccacttgttctagcaaccacctttaatcttttcctctgcaactttacaaaa 1545518  T
Q  611 t 611  Q
    |    
T  1545519 t 1545519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 277; E-Value: 1e-154
Query Start/End: Original strand, 311 - 611
Target Start/End: Original strand, 1540921 - 1541221
Alignment:
Q  311 agtgttaactattgtgtttagaactgctgccacgtttgctgagttcattttaattatgttttgaatattttaaatatgttctcctaatttctagttcagt 410  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |||    
T  1540921 agtgttaactattgtgtttagaactgctgccacgtttgttgagttcattttaattctattttgaatattttaaatatgttctcctaatttctagtttagt 1541020  T
Q  411 tttatttcctccttgttttcagcaatcagtttaactctagtattctatcgtggcctaacttataggaacatgatattagtgggcagttattgtctattct 510  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  1541021 tttatttcctccttgttttcagcaatcagtttaattctagtattctatcgtggcctaacttataggaacatgatattagtgggcagttattttctattct 1541120  T
Q  511 gtacttttctatttgtacgtttgaattgaataagaaatttactcttcttccacttgttctagcaaccacctttaatcttttcctctgcaactttacaaaa 610  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1541121 gtacttttctatttgtacgtttgaattgaataagaaatttactcttcttccacttgttctagcaaccacctttaatcttttcctctgcaactttacaaaa 1541220  T
Q  611 t 611  Q
    |    
T  1541221 t 1541221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 311 - 675
Target Start/End: Complemental strand, 30506128 - 30505766
Alignment:
Q  311 agtgttaactattgtgtttagaactgctgccacgtttgctgagttcattttaattatgttttgaatattttaaatatgttctcctaatttctagttcagt 410  Q
    ||||||| ||||||||||||||||||||||||||| ||| ||||| |||||| || |||||||||| ||||||||||||| ||||| |||||||||||||    
T  30506128 agtgttagctattgtgtttagaactgctgccacgtctgcagagtttattttacttctgttttgaatcttttaaatatgtt-tcctagtttctagttcagt 30506030  T
Q  411 tttatttcctccttgttttcagcaatcagtttaactctagtattctatcgtggcctaacttataggaacatgatattagtgggcagttattgtctattct 510  Q
    ||  ||||||||| ||||||||||| || |||   | ||||||||| ||||||||||||||||||||||||||||| | |||||||||||| ||||||||    
T  30506029 ttcttttcctcctagttttcagcaagcatttttttt-tagtattctgtcgtggcctaacttataggaacatgatatcaatgggcagttattttctattct 30505931  T
Q  511 gtacttttctatttgtacgtttgaattgaataagaaatttactcttcttccacttgttctagcaaccacctttaatcttttcctctgcaactttacaaaa 610  Q
    ||||||||||||||||||||||||||||||| | |||  ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  30505930 gtacttttctatttgtacgtttgaattgaatgaaaaacatactcttcttccacttgttctagcaactacctttaatcttttcctctgcaactttacaaaa 30505831  T
Q  611 taacaacagtttctatgttgagcacgcagatggaaccgttgacccctccgtatcttcattccttt 675  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30505830 taacaacagtttctatgttgagcacgcagatggaaccgttgacccctccgtatcttcattccttt 30505766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University