View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2252_high_11 (Length: 388)
Name: NF2252_high_11
Description: NF2252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2252_high_11 |
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Alignment Details
Target: chr5 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 13 - 370
Target Start/End: Complemental strand, 20488556 - 20488202
Alignment:
| Q |
13 |
atgaaccacaataagaaatccttccacagaagaaatgattctggtgagcttgatgtgtttgaagcatcaagatacttctcaggatacaatgaagtaattg |
112 |
Q |
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| T |
20488556 |
atgaaccacaataagaaatccttccacagaagaaatgattctggtgagcttgatgtgttcgaagcatcaagatacttctcaggatacaatgaagttattg |
20488457 |
T |
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| Q |
113 |
gatacaataatagctcaactttcacacaaaagattatgagagaagaaaggaatggatacaaaggtagaataagcttagacatgccaatgagaagcttact |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20488456 |
gatacaataatagctcaactttcacacaaaagattatgagagaagaaaggaatggatacaaaggtagaataagcttagacatgccaatgagaagcttact |
20488357 |
T |
|
| Q |
213 |
tccacaacaatttcatggaggaattgatcagaaacaaatgaaagagaagaaacacaacaaacaacctagctcaccaggtggtagacttgcaagtttcttg |
312 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20488356 |
tccacaacaatttcatggtggaattgatcagaaacaaatgaaagagaagaaacacaacaaacaacctagctcaccaggtggtagacttgcaagtttcttg |
20488257 |
T |
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| Q |
313 |
aattctctcttcaatcaatcaacatcgaagaagaagaaatcaaaatcaagttcacaat |
370 |
Q |
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| T |
20488256 |
aattctctcttcaatcaatcaacatcgaaga---agaaatcaaaatcaagttcacaat |
20488202 |
T |
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