View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2252_high_12 (Length: 383)
Name: NF2252_high_12
Description: NF2252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2252_high_12 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 118; Significance: 4e-60; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 16 - 160
Target Start/End: Complemental strand, 33994803 - 33994658
Alignment:
| Q |
16 |
cattttgctccaataaattataccatagagccacaaattggtaaaattcagctcatgtaaaaactttacctaaactggagtagtaaataaaatgatatta |
115 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
33994803 |
cattttgctccaataaattatactatagagccacaaattggtaaaattcagctcatttaaaagctttaccaaaactggagtagtaaataaaatgatatta |
33994704 |
T |
|
| Q |
116 |
aaatgggcaatgtatattat-gctaattctgagttttgactgcctt |
160 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
33994703 |
aaatgggcaatgtatattatacctaattctgagttttgactgcctt |
33994658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 253 - 368
Target Start/End: Complemental strand, 33994652 - 33994537
Alignment:
| Q |
253 |
tccacgcgacaacgtttaaataataacattaataataggtctagtccaaagtagtaactaatatttcatttagttgttatctttacacttagagaaaatg |
352 |
Q |
| |
|
||||||||| || |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33994652 |
tccacgcgataatgtttaaataataacattaataataggtccagtccaaagtagtaactaatatttcatttagttgttatctttacacttagagaaaatg |
33994553 |
T |
|
| Q |
353 |
atatagtatgtgaccg |
368 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
33994552 |
atatagtatgtgaccg |
33994537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 321 - 370
Target Start/End: Complemental strand, 10592776 - 10592727
Alignment:
| Q |
321 |
tttagttgttatctttacacttagagaaaatgatatagtatgtgaccgga |
370 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10592776 |
tttagttgttatctttacacttagagaaaatgatatagtatgtgaccgga |
10592727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 222
Target Start/End: Complemental strand, 10592878 - 10592836
Alignment:
| Q |
180 |
ttagaacgtggaagctgatgcaggggtaatgttgtttaattga |
222 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||| |||||| |
|
|
| T |
10592878 |
ttagaatgtggaagctgatgcaggggtaatgttgttgaattga |
10592836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University