View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2252_high_14 (Length: 361)
Name: NF2252_high_14
Description: NF2252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2252_high_14 |
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Alignment Details
Target: chr3 (Bit Score: 323; Significance: 0; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 1 - 347
Target Start/End: Complemental strand, 35941004 - 35940659
Alignment:
| Q |
1 |
tgtatatctttatatttacattatgatccttgagattgtgaaaatttaggaggaatatagttaccatgtgattgcaaagacctgaatattgcaactacat |
100 |
Q |
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| T |
35941004 |
tgtatatctttatatttacattatgatccttgagattgtgaaaatttaggaggaatatagttaccatgtgattgcaaagacctgaatattgcaactacat |
35940905 |
T |
|
| Q |
101 |
ttacattagtaagtaaatttacaacaccacacaagataagaagaatttatagattatcagttaatatttgattgatgacataacttcattttcatagtag |
200 |
Q |
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| T |
35940904 |
ttgcattagtaagtaaatttacaacaccacacaagataagaagaatttatagattatcagttaatatttgattgatgacataacttcatattcatagtag |
35940805 |
T |
|
| Q |
201 |
tggtgaaaagtttacctaggctcgaaaagttttaacaaatttcactaacaagtttatgatttgagtctacagaagctcaaaaagtttacctagcctctca |
300 |
Q |
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| T |
35940804 |
tggtgaaaagtttacctaggctcaaaaag-tttaacaaatttcactaacaagtttatgatttgagtctacagaagctcaaaaagtttacctagcctctca |
35940706 |
T |
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| Q |
301 |
agtttaacaaatttgattacgacaacataatgtttgaaccacacagg |
347 |
Q |
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| T |
35940705 |
agtttaacaaattcgattacgacaacataatgtttgaaccacacagg |
35940659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 110 - 202
Target Start/End: Complemental strand, 35915785 - 35915690
Alignment:
| Q |
110 |
taagtaaatttacaacaccacacaagataagaagaatttata----gattatcagttaatatttgattgatgacataacttcattttcatagtagtg |
202 |
Q |
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| T |
35915785 |
taagaaaatttgcatcaccacacacgataaaaagaatttatatatagattattagtta-tatttgattgatgacataactacattttcatagtagtg |
35915690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 107 - 202
Target Start/End: Complemental strand, 35935318 - 35935223
Alignment:
| Q |
107 |
tagtaagtaaatttacaacaccacacaagataagaagaatttatagattatcagttaatatttgattgatgacataacttcattttcatagtagtg |
202 |
Q |
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||||||| ||| |||||||||| ||| ||||||||| ||| || ||||| | ||||| |||||| ||| ||||||||||||||||||||||||| |
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| T |
35935318 |
tagtaagccaatatacaacaccagacatgataagaagtattgatcgattactacttaatgtttgatcgataacataacttcattttcatagtagtg |
35935223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 153 - 201
Target Start/End: Complemental strand, 35928716 - 35928667
Alignment:
| Q |
153 |
attatcagttaatattt-gattgatgacataacttcattttcatagtagt |
201 |
Q |
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| T |
35928716 |
attattagttaatattttgattgatgacataacttgattttcatagtagt |
35928667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 347
Target Start/End: Complemental strand, 35935198 - 35935090
Alignment:
| Q |
239 |
atttcactaacaagtttatgatttgagtctacagaagctcaaaaagtttacctagcctctcaagtttaacaaatttgattacgacaacataatgtttgaa |
338 |
Q |
| |
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|||| |||||||||| ||||| | ||||||||||||||| | | |||||||||| |||| ||||| | ||||||||| || |||||||| |||||| |
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| T |
35935198 |
attttactaacaagtatatgagtcgagtctacagaagctacacatgtttacctagactctagagtttgaaaaatttgatgctgataacataatatttgaa |
35935099 |
T |
|
| Q |
339 |
ccacacagg |
347 |
Q |
| |
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|||||||| |
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| T |
35935098 |
acacacagg |
35935090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 263 - 305
Target Start/End: Complemental strand, 35921764 - 35921722
Alignment:
| Q |
263 |
gagtctacagaagctcaaaaagtttacctagcctctcaagttt |
305 |
Q |
| |
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|||||||||||||||||| |||||||| ||| ||||||||||| |
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| T |
35921764 |
gagtctacagaagctcaacaagtttacttagactctcaagttt |
35921722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 202
Target Start/End: Complemental strand, 35922085 - 35922051
Alignment:
| Q |
168 |
ttgattgatgacataacttcattttcatagtagtg |
202 |
Q |
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|||||||||||||||| |||||||||||||||||| |
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| T |
35922085 |
ttgattgatgacataagttcattttcatagtagtg |
35922051 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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