View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2252_high_15 (Length: 324)

Name: NF2252_high_15
Description: NF2252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2252_high_15
NF2252_high_15
[»] chr4 (1 HSPs)
chr4 (13-308)||(37613333-37613628)


Alignment Details
Target: chr4 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 13 - 308
Target Start/End: Complemental strand, 37613628 - 37613333
Alignment:
Q  13 taggtgtgatagaccaagttgtaaatcatgaggatgagtagaaaattggtatagatttgttgtggttataggatctgacttgcctcagtagtagtagaaa 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37613628 taggtgtgatagaccaagttgtaaatcatgaggatgagtagaaaattggtatagatttgttgtggttataggatctgacttgcctcagtagtagtagaaa 37613529  T
Q  113 actggcacagttgatattgattttttatttgaataagaatagaaacagagaaatttgttacaattactgaatcacctctaaaacttattcctggtctccc 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||    
T  37613528 actggcacagttgatattgattttttatttgaataagaatagaaacagagaaatttgttacaattactgaatcacctctaaaaattattcctggcctccc 37613429  T
Q  213 ttttttattgcaagttatggttcccttaaattttttaaggaaaccaataaggttaaaaataagactcagtgcagatgattgctttaaatcatcacg 308  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37613428 ttttttaatgcaagttatggttcccttaaattttttaaggaaaccaataaggttaaaaataagactcagtgcagatgattgctttaaatcatcacg 37613333  T

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