View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2252_high_26 (Length: 219)
Name: NF2252_high_26
Description: NF2252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2252_high_26 |
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Alignment Details
Target: chr3 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 827672 - 827468
Alignment:
| Q |
1 |
acctgatgcaatcaattacaatgctctaaattctaatccatggctatttcacctgaagtattaaaatttttattatcatagtaaggtaaagcatttaact |
100 |
Q |
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| T |
827672 |
acctggtgcaatcaattacaatgctctaaattctaatccatggctatttcacctgaagtattaaaatttttattatcatagtaaggtaaagcatttaact |
827573 |
T |
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| Q |
101 |
ccttttttcaactgaaacaggttcatgcgtccagaaactgcacagggcatatttgttaatttcaaagacttgtactattacaatggaaacaagctaccct |
200 |
Q |
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| T |
827572 |
ccttttttcaactgaaacaggttcatgcgtccagaaactgcacagggcatatttgttaatttcaaagacttgtactattacaatggaaacaagctaccct |
827473 |
T |
|
| Q |
201 |
ttgct |
205 |
Q |
| |
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||||| |
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| T |
827472 |
ttgct |
827468 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 32 - 205
Target Start/End: Complemental strand, 834178 - 834000
Alignment:
| Q |
32 |
tctaatccatggctatttcacctgaagtattaaaatttttattatcatagtaa--ggtaaag----catttaactccttttttcaactgaaacaggttca |
125 |
Q |
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| T |
834178 |
tctaatccatgggtatttcacctgaagtattaaaaatttgattatcatggtaactggtaaggtaaacatttaattccttttt-caactggaacaggttta |
834080 |
T |
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| Q |
126 |
tgcgtccagaaactgcacagggcatatttgttaatttcaaagacttgtactattacaatggaaacaagctaccctttgct |
205 |
Q |
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| T |
834079 |
tgcgtccagaaactgcacagggcatatttgttaatttcagagacttgtaccattacaatagagacaagctaccctttgct |
834000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 84; Significance: 4e-40; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 102 - 205
Target Start/End: Complemental strand, 940370 - 940267
Alignment:
| Q |
102 |
cttttttcaactgaaacaggttcatgcgtccagaaactgcacagggcatatttgttaatttcaaagacttgtactattacaatggaaacaagctaccctt |
201 |
Q |
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|||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||| || |||||||||||||||||||||||||||||||| |
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| T |
940370 |
cttttttcaactgaaacaggtttatgcgtccagaaactgctcagggcatattcgttaatttcaaggatttgtactattacaatggaaacaagctaccctt |
940271 |
T |
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| Q |
202 |
tgct |
205 |
Q |
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|||| |
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| T |
940270 |
tgct |
940267 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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