View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2252_high_5 (Length: 482)
Name: NF2252_high_5
Description: NF2252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2252_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 371; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 17 - 474
Target Start/End: Original strand, 5822430 - 5822904
Alignment:
| Q |
17 |
ctagagactgatgggagagtgttatttaaccccttgcagaagatacgtttcagtgataactcattttcctttgaaatctcagaaataggtgtaggtgcag |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5822430 |
ctagagactgatgggagagtgttatttaaccccttgcagaagatacgtttcagtgataactcattttcctttgaaatctcagaaataggtgtaggtgcag |
5822529 |
T |
|
| Q |
117 |
atgctggtgctaacgcaatatcctgtgaaatcgatgaagcagggccaagtgcagctcctgagctagtaagttcgattgtagcacgacgagggttgttctt |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
5822530 |
atgctggtgctaacgcaatatcctgtgaaatcgatgaagcaggaccaagtgcagctcctgagctagtaagttcaattgtagcacgacgagggttgttctt |
5822629 |
T |
|
| Q |
217 |
gtgtttctcacaaagttccggcaaaaatactcctagagtcacatgaatgcagcttagttattgtataacaaaaataaaaggtgaaaatcaaagcagccct |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5822630 |
gtgtttctcacaaagttccggcaaaaatactcctagagtcacatgaatgcagcttagttattgtataacaaaaataaaaggtgaaaatcaaagcagccct |
5822729 |
T |
|
| Q |
317 |
aatgttacatatactaaattatttgaacg------------------ttatcttttagtagagctcattacccacttgaactgaatcacttagttatttt |
398 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5822730 |
aatgttacatatactaaattatttgaacgtggattctccggaacgatttatcttttagtagagctcattacccacttgaactgaatcacttagttatttt |
5822829 |
T |
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| Q |
399 |
cttatatcatgtattggtcttagggaagtaannnnnnnnnnattctcattgactttgacaaatgtatgtgatgatg |
474 |
Q |
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| T |
5822830 |
cttatatcatgtattggtctt-gggaagtaaatttttttttattctcattgactttgacaaatgtatgtgatgatg |
5822904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 108 - 283
Target Start/End: Complemental strand, 5829368 - 5829193
Alignment:
| Q |
108 |
taggtgcagatgctggtgctaacgcaatatcctgtgaaatcgatgaagcagggccaagtgcagctcctgagctagtaagttcgattgtagcacgacgagg |
207 |
Q |
| |
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||||||||| ||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
5829368 |
taggtgcagctgcaggtgctaacgcaatatcctgtgaaatcgatgaagcaggaccaagtgcagctcctgagctagtaagttcaattgtagcacgacgagg |
5829269 |
T |
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| Q |
208 |
gttgttcttgtgtttctcacaaagttccggcaaaaatactcctagagtcacatgaatgcagcttagttattgtata |
283 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| ||||| |
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| T |
5829268 |
gttggtcttgtgtttctcacaaagttccggcaaaaatactcctgttgtcacattaatgcagcttagttatcgtata |
5829193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 109 - 250
Target Start/End: Original strand, 5831980 - 5832121
Alignment:
| Q |
109 |
aggtgcagatgctggtgctaacgcaatatcctgtgaaatcgatgaagcagggccaagtgcagctcctgagctagtaagttcgattgtagcacgacgaggg |
208 |
Q |
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|||||||| ||| ||||||||| |||| |||| ||||| || ||||| ||||||| ||||||||| ||||| ||| |||| |||||||||||||| |
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| T |
5831980 |
aggtgcagctgcaggtgctaacacaatgtcctctgaaactgaagaagccgggccaaatgcagctccggagctcacaagctcgaccatagcacgacgaggg |
5832079 |
T |
|
| Q |
209 |
ttgttcttgtgtttctcacaaagttccggcaaaaatactcct |
250 |
Q |
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||| |||||||||||||||| ||||| ||||||||||||||| |
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| T |
5832080 |
ttggtcttgtgtttctcacatagttctggcaaaaatactcct |
5832121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 346 - 474
Target Start/End: Complemental strand, 5829102 - 5828973
Alignment:
| Q |
346 |
ttatcttttagtagagctcattacccacttgaactgaatcacttagttattttcttatatcatgtattggtcttagggaagt--aannnnnnnnnnattc |
443 |
Q |
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||||||| ||||| ||||||||||| ||||||||||||||| ||| |||||||||||||||||||||| ||||| ||||||| || |||| |
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| T |
5829102 |
ttatcttctagtatagctcattaccaacttgaactgaatcagttaattattttcttatatcatgtatttgtctt-gggaagtaaaatattttttttattc |
5829004 |
T |
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| Q |
444 |
tcattgactttgacaaatgtatgtgatgatg |
474 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
5829003 |
acattgactttgacaaatgtatgtgatgatg |
5828973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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