View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2252_high_6 (Length: 433)
Name: NF2252_high_6
Description: NF2252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2252_high_6 |
 | |
|
| [»] scaffold0248 (1 HSPs) |
| | |
|
| [»] scaffold0041 (2 HSPs) |
| | |
|
| [»] scaffold0007 (3 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 287; Significance: 1e-161; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 83 - 430
Target Start/End: Original strand, 19877869 - 19878216
Alignment:
| Q |
83 |
ggtgaggcctagcctacctttacaaacacatggacaatttatccatgtaacttaacaataataaaaagcagccacgtatactcattgtatttgaaatact |
182 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19877869 |
ggtgaggcttagcctacctttacaaacacatggccaatttacccatgtaacttaacaataataaaaagcagccacgtatactcattgtatttgaaatact |
19877968 |
T |
|
| Q |
183 |
tattatttagttttataaattgtaaccatatatttttgttattttgcagatttacccaaacattaattaagttttatcttctcnnnnnnnttgtccagac |
282 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |
|
|
| T |
19877969 |
tattatttagttttataaattgtaaccatatacttttgttattttgcagatttacccaagcattaattaagttttatcttctcaaaaaaattgtccagac |
19878068 |
T |
|
| Q |
283 |
tacattctgcttctgtgttttcatctttcaatttttcaacttaaccattacttccttcaatccattcgtaattttggaaaaaattgattcatcaacgtca |
382 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |
|
|
| T |
19878069 |
tacattctgcttctgcgttttcatctttcaatttttcaacctaaccattacttccttcaatccattcgtaatttgggaaaaaattgattcatcaacatca |
19878168 |
T |
|
| Q |
383 |
aattcatccatcgtatttacactccactcataccgtttcttctctctc |
430 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
19878169 |
aattcatccatcgtatttactctccactcataccgtttcttctctctc |
19878216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 299 - 430
Target Start/End: Complemental strand, 19880054 - 19879923
Alignment:
| Q |
299 |
gttttcatctttcaatttttcaacttaaccattacttccttcaatccattcgtaattttggaaaaaattgattcatcaacgtcaaattcatccatcgtat |
398 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
19880054 |
gttttcatctttcaatttttcaacccaaccattgcttccttcaatccattcgtaatttgggaaaaaattgattcatcaacatcaaattcatccatcgtat |
19879955 |
T |
|
| Q |
399 |
ttacactccactcataccgtttcttctctctc |
430 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| |
|
|
| T |
19879954 |
ttactctccactcataccgtttcttctctctc |
19879923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 314 - 375
Target Start/End: Complemental strand, 19880153 - 19880090
Alignment:
| Q |
314 |
tttttcaacttaaccattacttccttcaatccattcgtaattttgga--aaaaattgattcatc |
375 |
Q |
| |
|
||||||||| ||||||| ||||||||||||||||| |||||| ||| ||||||||||||||| |
|
|
| T |
19880153 |
tttttcaacccaaccatttcttccttcaatccattcataatttgggaacaaaaattgattcatc |
19880090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 270; Significance: 1e-151; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 81 - 427
Target Start/End: Complemental strand, 13434873 - 13434527
Alignment:
| Q |
81 |
aaggtgaggcctagcctacctttacaaacacatggacaatttatccatgtaacttaacaataataaaaagcagccacgtatactcattgtatttgaaata |
180 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13434873 |
aaggtgaggcctagcctacctttacaaacacatgggcaatttacccatgtatcttaacaataataaaaagcagccacgtatactcattgtatttgaaata |
13434774 |
T |
|
| Q |
181 |
cttattatttagttttataaattgtaaccatatatttttgttattttgcagatttacccaaacattaattaagttttatcttctcnnnnnnnttgtccag |
280 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| |||||||||||||||||||||| |||||||| |
|
|
| T |
13434773 |
cttattatttagttttataaattgtaaccatatacttttgttattttacagatttacccaagcattaattaagttttatcttctaaaaaaaattgtccag |
13434674 |
T |
|
| Q |
281 |
actacattctgcttctgtgttttcatctttcaatttttcaacttaaccattacttccttcaatccattcgtaattttggaaaaaattgattcatcaacgt |
380 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |
|
|
| T |
13434673 |
actacattctgcttctgcgttttcatctttcaatttttcaacccaaccattacttccttcaatccattcgtaatttgggaaaaaattgattcatcaacat |
13434574 |
T |
|
| Q |
381 |
caaattcatccatcgtatttacactccactcataccgtttcttctct |
427 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||| |||||| |
|
|
| T |
13434573 |
caaattcatccatcgtatttactctccactcataccgtttattctct |
13434527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 293 - 430
Target Start/End: Original strand, 13432761 - 13432898
Alignment:
| Q |
293 |
ttctgtgttttcatctttcaatttttcaacttaaccattacttccttcaatccattcgtaattttggaaaaaattgattcatcaacgtcaaattcatcca |
392 |
Q |
| |
|
||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | ||||||||||||||||||| ||||||||||||| |
|
|
| T |
13432761 |
ttctgcgttttcatctttcaatttttcaacccaaccattacttccttcaatccattcgtaatttggtaaaaaattgattcatcaacatcaaattcatcca |
13432860 |
T |
|
| Q |
393 |
tcgtatttacactccactcataccgtttcttctctctc |
430 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
13432861 |
tcgtatttactctccactcataccgtttcttctctctc |
13432898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 325 - 375
Target Start/End: Original strand, 13432679 - 13432731
Alignment:
| Q |
325 |
aaccattacttccttcaatccattcgtaattttgga--aaaaattgattcatc |
375 |
Q |
| |
|
||||||| ||||||||||||||||| |||||| ||| ||||||||||||||| |
|
|
| T |
13432679 |
aaccatttcttccttcaatccattcataatttgggaacaaaaattgattcatc |
13432731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 267; Significance: 1e-149; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 83 - 430
Target Start/End: Original strand, 11536806 - 11537153
Alignment:
| Q |
83 |
ggtgaggcctagcctacctttacaaacacatggacaatttatccatgtaacttaacaataataaaaagcagccacgtatactcattgtatttgaaatact |
182 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||| |||| ||||||||||| ||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
11536806 |
ggtgaggcctagcctacctttacaaacacatgggcaatttacccatataacttaacaaaaataaaaagcagccacgtatactcattatatttgaaatact |
11536905 |
T |
|
| Q |
183 |
tattatttagttttataaattgtaaccatatatttttgttattttgcagatttacccaaacattaattaagttttatcttctcnnnnnnnttgtccagac |
282 |
Q |
| |
|
||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |
|
|
| T |
11536906 |
tattatttagttttataaattataaccatatacttttgttattttgcagatttacccaagcattaattaagttttatcttctcaaaaaaattgtccagac |
11537005 |
T |
|
| Q |
283 |
tacattctgcttctgtgttttcatctttcaatttttcaacttaaccattacttccttcaatccattcgtaattttggaaaaaattgattcatcaacgtca |
382 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |
|
|
| T |
11537006 |
tacattctgcttctgcgttttcatctttcaatttttcaacccaaccattacttccttcaatccattcgtaatttgggaaaaaattgattcatcaacatca |
11537105 |
T |
|
| Q |
383 |
aattcatccatcgtatttacactccactcataccgtttcttctctctc |
430 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
11537106 |
aattcatctatcgtatttactctccactcataccgtttcttctctctc |
11537153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 80 - 430
Target Start/End: Original strand, 46042527 - 46042876
Alignment:
| Q |
80 |
gaaggtgaggcctagcctacctttacaaacacatggacaatttatccatgtaacttaacaataataaaaagcagccacgtatactcattgtatttgaaat |
179 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| ||||| | ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |
|
|
| T |
46042527 |
gaaggtgaggcctagcctacctttacaaacatatgggcaattcacccatgtaacttaacaataataaaaaacagccacatatactcattgtatttgaaat |
46042626 |
T |
|
| Q |
180 |
acttattatttagttttataaattgtaaccatatatttttgttattttgcagatttacccaaacattaattaagttttatcttctcnnnnnnnttgtcca |
279 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||||||||||||||||||| || | || |
|
|
| T |
46042627 |
acttattatttagttttataaattgtaaccatatacttttgttattttgcagatttacctaagcattaattaagttttatcttctcaaaaaaattattca |
46042726 |
T |
|
| Q |
280 |
gactacattctgcttctgtgttttcatctttcaatttttcaacttaaccattacttccttcaatccattcgtaattttggaaaaaattgattcatcaacg |
379 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| |
|
|
| T |
46042727 |
-actacattctgcttctgcgttttcatctttcaatttttcaacctaaccattacttccttcaatctattcgtaatttgggaaaaaattgattcatcaaca |
46042825 |
T |
|
| Q |
380 |
tcaaattcatccatcgtatttacactccactcataccgtttcttctctctc |
430 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
46042826 |
tcaaattcatccatcgtatttactctccactcataccgtttcttctctctc |
46042876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 81 - 265
Target Start/End: Original strand, 29531699 - 29531883
Alignment:
| Q |
81 |
aaggtgaggcctagcctacctttacaaacacatggacaatttatccatgtaacttaacaataataaaaagcagccacgtatactcattgtatttgaaata |
180 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||| ||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29531699 |
aaggtgaggcctaacctacctttacaaacacatgggcaatttaccgatgtaacttaacaataataaaaagcagccacgtatactcattgtatttgaaata |
29531798 |
T |
|
| Q |
181 |
cttattatttagttttataaattgtaaccatatatttttgttattttgcagatttacccaaacattaattaagttttatcttctc |
265 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| ||||||||||||||||||||||| |
|
|
| T |
29531799 |
cttattatttagttttataaattgtaaccatatacttttgttattttgtagatttacccaagcattaattaagttttatcttctc |
29531883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 296 - 431
Target Start/End: Complemental strand, 29532737 - 29532601
Alignment:
| Q |
296 |
tgtgttttcatctttcaatttttcaacttaaccattacttccttcaatccattcgtaattttgg-aaaaaattgattcatcaacgtcaaattcatccatc |
394 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || |||||| |||||||||||| ||||||||||||||| |
|
|
| T |
29532737 |
tgtgttttcatctttcaatttttcaacccaaccattacttccttcaatccattcgtaatttgggaaaaaaaatgattcatcaacatcaaattcatccatc |
29532638 |
T |
|
| Q |
395 |
gtatttacactccactcataccgtttcttctctctcg |
431 |
Q |
| |
|
|||||||| |||||| ||||||||||||||||||||| |
|
|
| T |
29532637 |
gtatttactctccacccataccgtttcttctctctcg |
29532601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 300 - 430
Target Start/End: Complemental strand, 46044412 - 46044282
Alignment:
| Q |
300 |
ttttcatctttcaatttttcaacttaaccattacttccttcaatccattcgtaattttggaaaaaattgattcatcaacgtcaaattcatccatcgtatt |
399 |
Q |
| |
|
||||||||||||||||||||||| || ||||||||||||||||||||| ||||||| | ||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
46044412 |
ttttcatctttcaatttttcaacccaatcattacttccttcaatccatttgtaatttggaaaaaaattgattcatcaacatcaaattcatccatcgtatt |
46044313 |
T |
|
| Q |
400 |
tacactccactcataccgtttcttctctctc |
430 |
Q |
| |
|
||| ||||||||||||||||||||||||||| |
|
|
| T |
46044312 |
tactctccactcataccgtttcttctctctc |
46044282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 314 - 375
Target Start/End: Complemental strand, 46044512 - 46044449
Alignment:
| Q |
314 |
tttttcaacttaaccattacttccttcaatccattcgtaattttgga--aaaaattgattcatc |
375 |
Q |
| |
|
||||||||| ||||||| ||||||||||||||||| |||||| ||| ||||||||||||||| |
|
|
| T |
46044512 |
tttttcaacccaaccatttcttccttcaatccattcataatttgggaacaaaaattgattcatc |
46044449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 325 - 375
Target Start/End: Complemental strand, 29532822 - 29532770
Alignment:
| Q |
325 |
aaccattacttccttcaatccattcgtaattttgga--aaaaattgattcatc |
375 |
Q |
| |
|
||||||| ||||||||||||||||| |||||| ||| ||||||||||||||| |
|
|
| T |
29532822 |
aaccatttcttccttcaatccattcataatttgggaacaaaaattgattcatc |
29532770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0248 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: scaffold0248
Description:
Target: scaffold0248; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 85 - 430
Target Start/End: Complemental strand, 15875 - 15524
Alignment:
| Q |
85 |
tgaggcctagcctacctttacaaacacatggacaatttatccatgtaacttaacaataataaaaagcagccacgtatactcattgtatttgaaatactta |
184 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
15875 |
tgaggcctagcctacctttacaaacacatgggcaatttacccatgtaagttaacaataataaaaagtagccacgtatactcattgtatttgaaatactta |
15776 |
T |
|
| Q |
185 |
ttatttagttttataaat------tgtaaccatatatttttgttattttgcagatttacccaaacattaattaagttttatcttctcnnnnnnnttgtcc |
278 |
Q |
| |
|
|||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
15775 |
ttatttagttttataaatataaattgtaaccatatacttttgttattttgcagatttacccaaacattaattaagttttatcttctcaaaacaattgtcc |
15676 |
T |
|
| Q |
279 |
agactacattctgcttctgtgttttcatctttcaatttttcaacttaaccattacttccttcaatccattcgtaattttggaaaaaattgattcatcaac |
378 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |
|
|
| T |
15675 |
agactacattctgcttctgcgttttcatctttcaatttttcaacctaaccattacttccttcaatccatttgtaatttgggaaaaaattgattcatcaac |
15576 |
T |
|
| Q |
379 |
gtcaaattcatccatcgtatttacactccactcataccgtttcttctctctc |
430 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||||||||||||||||||||| |
|
|
| T |
15575 |
atcaaattcatccatcgtatttactctccagtcataccgtttcttctctctc |
15524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 257; Significance: 1e-143; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 81 - 430
Target Start/End: Complemental strand, 38084181 - 38083832
Alignment:
| Q |
81 |
aaggtgaggcctagcctacctttacaaacacatggacaatttatccatgtaacttaacaataataaaaagcagccacgtatactcattgtatttgaaata |
180 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| ||||||| |||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
38084181 |
aaggtgaggcctagcctacctttacagacacatgggcaatttacccatgtaatttaacaataataaaaagcagtcacgtatactcattgtatttgaaata |
38084082 |
T |
|
| Q |
181 |
cttattatttagttttataaattgtaaccatatatttttgttattttgcagatttacccaaacattaattaagttttatcttctcnnnnnnnttgtccag |
280 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| ||||||||||||||||||||||| |||||||| |
|
|
| T |
38084081 |
cttattatttagttttataaattgtaaccatatacttttgttattttgcaaatttacccaagcattaattaagttttatcttctcaaaaaaattgtccag |
38083982 |
T |
|
| Q |
281 |
actacattctgcttctgtgttttcatctttcaatttttcaacttaaccattacttccttcaatccattcgtaattttggaaaaaattgattcatcaacgt |
380 |
Q |
| |
|
|||||||||| |||||| |||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| | ||||||||||||||||||| | |
|
|
| T |
38083981 |
actacattctacttctgcgttttcatctttcaatttttcaacctaaccgttacttccttcaatccattcgtaatttggaaaaaaattgattcatcaacat |
38083882 |
T |
|
| Q |
381 |
caaattcatccatcgtatttacactccactcataccgtttcttctctctc |
430 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| | ||||||||||||| |
|
|
| T |
38083881 |
caaattcatccatcgtatttactctccactcatatcatttcttctctctc |
38083832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 81 - 430
Target Start/End: Original strand, 8203725 - 8204066
Alignment:
| Q |
81 |
aaggtgaggcctagcctacctttacaaacacatggacaatttatccatgtaacttaacaataataaaaagcagccacgtatactcattgtatttgaaata |
180 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
8203725 |
aaggtgaggcctagcctacctttacaaacacatgggcaatttacccatgtaacttaacaataataaaaagcagccacgtat--tcattgtatttgaaata |
8203822 |
T |
|
| Q |
181 |
cttattatttagttttataaattgtaaccatatatttttgttattttgcagatttacccaaacattaattaagttttatcttctcnnnnnnnttgtccag |
280 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
8203823 |
cttattatttagttttataaattgtgaccatatacttttattattttgcagatttacccaaacattaattaagttttatcttctcaaaaaaattgtccag |
8203922 |
T |
|
| Q |
281 |
actacattctgcttctgtgttttcatctttcaatttttcaacttaaccattacttccttcaatccattcgtaattttggaaaaaattgattcatcaacgt |
380 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| | |
|
|
| T |
8203923 |
actacattctgcttctgcgttttcatctttcaatttttcaacccaaccattacttccttcaatccattcgtaatttgggaaaaaattgattca------t |
8204016 |
T |
|
| Q |
381 |
caaattcatccatcgtatttacactccactcataccgtttcttctctctc |
430 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
8204017 |
caaattcatccatcgtatttactctccactcataccgtttcttctctctc |
8204066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 78 - 430
Target Start/End: Complemental strand, 22974610 - 22974258
Alignment:
| Q |
78 |
ttgaaggtgaggcctagcctacctttacaaacacatggacaatttatccatgtaacttaacaataataaaaagcagccacgtatactcattgtatttgaa |
177 |
Q |
| |
|
|||||||||||| ||||||||||||| |||||||||| ||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
22974610 |
ttgaaggtgaggtatagcctacctttataaacacatgggcaatttacccatgtaacttaacaataataaaaagcagctacgtatactcattgtatttgaa |
22974511 |
T |
|
| Q |
178 |
atacttattatttagttttataaattgtaaccatatatttttgttattttgcagatttacccaaacattaattaagttttatcttctcnnnnnnnttgtc |
277 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |
|
|
| T |
22974510 |
atacttattatttagtttcataaattgtaaccatatacttttgttattttgcagatttacccaagcattaattaagttttatcttctcaaaaaaattgtc |
22974411 |
T |
|
| Q |
278 |
cagactacattctgcttctgtgttttcatctttcaatttttcaacttaaccattacttccttcaatccattcgtaattttggaaaaaattgattcatcaa |
377 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||| ||| ||| |||||||||||||||||||||||| | |||||||||||||||||| |
|
|
| T |
22974410 |
cagactacattctgcttctgcgttttcatctttcaatttttcaacccaactatttcttccttcaatccattcgtaatttggaaaaaaattgattcatcaa |
22974311 |
T |
|
| Q |
378 |
cgtcaaattcatccatcgtatttacactccactcataccgtttcttctctctc |
430 |
Q |
| |
|
| |||||||||||||| |||||||| ||||||||||| ||||||||||||||| |
|
|
| T |
22974310 |
catcaaattcatccatggtatttactctccactcatatcgtttcttctctctc |
22974258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 293 - 430
Target Start/End: Complemental strand, 8205771 - 8205634
Alignment:
| Q |
293 |
ttctgtgttttcatctttcaatttttcaacttaaccattacttccttcaatccattcgtaattttggaaaaaattgattcatcaacgtcaaattcatcca |
392 |
Q |
| |
|
||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| |
|
|
| T |
8205771 |
ttctgcgttttcatctttcaatttttcaacccaaccattacttccttcaatccattcgtaatttgggaaaaaattgattcatcaacatcaaattcatcca |
8205672 |
T |
|
| Q |
393 |
tcgtatttacactccactcataccgtttcttctctctc |
430 |
Q |
| |
|
|||||||||| || |||| ||||||||||||||||||| |
|
|
| T |
8205671 |
tcgtatttactcttcacttataccgtttcttctctctc |
8205634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 293 - 430
Target Start/End: Original strand, 22973193 - 22973329
Alignment:
| Q |
293 |
ttctgtgttttcatctttcaatttttcaacttaaccattacttccttcaatccattcgtaattttggaaaaaattgattcatcaacgtcaaattcatcca |
392 |
Q |
| |
|
||||| ||||||||||| |||||||||||| |||||| ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| |
|
|
| T |
22973193 |
ttctgcgttttcatcttccaatttttcaacccaaccat-acttccttcaatccattcgtaatttgggaaaaaattgattcatcaacatcaaattcatcca |
22973291 |
T |
|
| Q |
393 |
tcgtatttacactccactcataccgtttcttctctctc |
430 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
22973292 |
tcgtatttactctccactcataccgtttcttctctctc |
22973329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 314 - 430
Target Start/End: Original strand, 38082941 - 38083059
Alignment:
| Q |
314 |
tttttcaacttaaccattacttccttcaatccattcgtaattttggaa--aaaattgattcatcaacgtcaaattcatccatcgtatttacactccactc |
411 |
Q |
| |
|
||||||||| ||||||| ||||||||||||||||| |||||| |||| ||||||||||||||||| ||||||||||||||||||||||| |||||||| |
|
|
| T |
38082941 |
tttttcaacccaaccatttcttccttcaatccattcataatttgggaacaaaaattgattcatcaacatcaaattcatccatcgtatttactctccactc |
38083040 |
T |
|
| Q |
412 |
ataccgtttcttctctctc |
430 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
38083041 |
ataccgtttcttctctctc |
38083059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 83 - 123
Target Start/End: Complemental strand, 1304665 - 1304625
Alignment:
| Q |
83 |
ggtgaggcctagcctacctttacaaacacatggacaattta |
123 |
Q |
| |
|
||||||||||| |||| |||||||||||||||| ||||||| |
|
|
| T |
1304665 |
ggtgaggcctaacctatctttacaaacacatgggcaattta |
1304625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 314 - 375
Target Start/End: Complemental strand, 8205864 - 8205801
Alignment:
| Q |
314 |
tttttcaacttaaccattacttccttcaatccattcgtaattttgga--aaaaattgattcatc |
375 |
Q |
| |
|
||||||||| ||| ||| ||||||||||||||||| |||||| ||| ||||||||||||||| |
|
|
| T |
8205864 |
tttttcaacccaactatttcttccttcaatccattcataatttgggaacaaaaattgattcatc |
8205801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 314 - 375
Target Start/End: Original strand, 22973100 - 22973163
Alignment:
| Q |
314 |
tttttcaacttaaccattacttccttcaatccattcgtaattttgga--aaaaattgattcatc |
375 |
Q |
| |
|
||||||||| ||||||| ||||||||||| ||||| |||||| ||| ||||||||||||||| |
|
|
| T |
22973100 |
tttttcaacccaaccatttcttccttcaattcattcataatttgggaacaaaaattgattcatc |
22973163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 82 - 430
Target Start/End: Complemental strand, 43515 - 43172
Alignment:
| Q |
82 |
aggtgaggcctagcctacctttacaaacacatggacaatttatccatgtaacttaacaataataaaaagcagccacgtatactcattgtatttgaaatac |
181 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| ||||||| | ||||||||||||||||||||||||||| |||||||||||||||||||| || |
|
|
| T |
43515 |
aggtgaggcctagcctacctttacaaatacatgggcaatttaccaatgtaacttaacaataataaaaagcagtcacgtatactcattgtattt-----ac |
43421 |
T |
|
| Q |
182 |
ttattatttagttttataaattgtaaccatatatttttgttattttgcagatttacccaaacattaattaagttttatcttctcnnnnnnnttgtccaga |
281 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| ||||||| | |
|
|
| T |
43420 |
ttattatttagttttataaattgtaaccatatatttttgttattttgcaaatttacccaagcattaattaagttttatcttctcaaaaagattgtccaaa |
43321 |
T |
|
| Q |
282 |
ctacattctgcttctgtgttttcatctttcaatttttcaacttaaccattacttccttcaatccattcgtaattttggaaaaaattgattcatcaacgtc |
381 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| || |
|
|
| T |
43320 |
ctacattctgcttctgcgttttcatctttcaatttttcaacctaaccattacttccttcaatccattcgtaatttgggaaaaaattgattcatcaacatc |
43221 |
T |
|
| Q |
382 |
aaattcatccatcgtatttacactccactcataccgtttcttctctctc |
430 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| |||||||||||||| |
|
|
| T |
43220 |
aaattcatccatcgtatttactctccactcatactgtttcttctctctc |
43172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 314 - 430
Target Start/End: Original strand, 65333 - 65451
Alignment:
| Q |
314 |
tttttcaacttaaccattacttccttcaatccattcgtaattttggaa--aaaattgattcatcaacgtcaaattcatccatcgtatttacactccactc |
411 |
Q |
| |
|
||||||||| ||||||| |||||||||||||||| |||||| |||| ||||||||||||||||| ||||||||||||||||||||||| |||||||| |
|
|
| T |
65333 |
tttttcaacccaaccatttattccttcaatccattcataatttgggaacaaaaattgattcatcaacatcaaattcatccatcgtatttactctccactc |
65432 |
T |
|
| Q |
412 |
ataccgtttcttctctctc |
430 |
Q |
| |
|
||||| ||||||||||||| |
|
|
| T |
65433 |
ataccatttcttctctctc |
65451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 252; Significance: 1e-140; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 82 - 430
Target Start/End: Original strand, 40906503 - 40906846
Alignment:
| Q |
82 |
aggtgaggcctagcctacctttacaaacacatggacaatttatccatgtaacttaacaataataaaaagcagccacgtatactcattgtatttgaaatac |
181 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| ||||||| | ||||||||||||||||||||||||||| |||||||||||||||||||| || |
|
|
| T |
40906503 |
aggtgaggcctagcctacctttacaaatacatgggcaatttaccaatgtaacttaacaataataaaaagcagtcacgtatactcattgtattt-----ac |
40906597 |
T |
|
| Q |
182 |
ttattatttagttttataaattgtaaccatatatttttgttattttgcagatttacccaaacattaattaagttttatcttctcnnnnnnnttgtccaga |
281 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| ||||||| | |
|
|
| T |
40906598 |
ttattatttagttttataaattgtaaccatatatttttgttattttgcaaatttacccaagcattaattaagttttatcttctcaaaaagattgtccaaa |
40906697 |
T |
|
| Q |
282 |
ctacattctgcttctgtgttttcatctttcaatttttcaacttaaccattacttccttcaatccattcgtaattttggaaaaaattgattcatcaacgtc |
381 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| || |
|
|
| T |
40906698 |
ctacattctgcttctgcgttttcatctttcaatttttcaacctaaccattacttccttcaatccattcgtaatttgggaaaaaattgattcatcaacatc |
40906797 |
T |
|
| Q |
382 |
aaattcatccatcgtatttacactccactcataccgtttcttctctctc |
430 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| |||||||||||||| |
|
|
| T |
40906798 |
aaattcatccatcgtatttactctccactcatactgtttcttctctctc |
40906846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 81 - 256
Target Start/End: Original strand, 32254811 - 32254986
Alignment:
| Q |
81 |
aaggtgaggcctagcctacctttacaaacacatggacaatttatccatgtaacttaacaataataaaaagcagccacgtatactcattgtatttgaaata |
180 |
Q |
| |
|
||||||||||||||| |||| |||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32254811 |
aaggtgaggcctagcttaccattacaaacacatgggcaatttacccatgtaacttaacaataataaaaagcagccacgtatactcattgtatttgaaata |
32254910 |
T |
|
| Q |
181 |
cttattatttagttttataaattgtaaccatatatttttgttattttgcagatttacccaaacattaattaagttt |
256 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |||||||||||||| |
|
|
| T |
32254911 |
cttattatttagttttataaattgtaaccatatacttttgttattttgtagatttacccaagcattaattaagttt |
32254986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 251 - 430
Target Start/End: Original strand, 32256517 - 32256696
Alignment:
| Q |
251 |
aagttttatcttctcnnnnnnnttgtccagactacattctgcttctgtgttttcatctttcaatttttcaacttaaccattacttccttcaatccattcg |
350 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| ||||| |
|
|
| T |
32256517 |
aagttttatcttctcaaaaaaattgtccagactacattctgcttctgcgttttcatctttcaatttttcaacctaaccattacttccttcaatctattcg |
32256616 |
T |
|
| Q |
351 |
taattttggaaaaaattgattcatcaacgtcaaattcatccatcgtatttacactccactcataccgtttcttctctctc |
430 |
Q |
| |
|
|||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
32256617 |
taatttgcgaaaaaattgattcatcaacatcaaattcatccatcgtatttactctccactcataccgtttcttctctctc |
32256696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 293 - 430
Target Start/End: Complemental strand, 32257705 - 32257569
Alignment:
| Q |
293 |
ttctgtgttttcatctttcaatttttcaacttaaccattacttccttcaatccattcgtaattttggaaaaaattgattcatcaacgtcaaattcatcca |
392 |
Q |
| |
|
||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| ||||||||||||| ||||||||||||| |
|
|
| T |
32257705 |
ttctgcgttttcatctttcaatttttcaacccaaccattacttccttcaatccattcgtaatttgggaaaaa-ttgattcatcaacatcaaattcatcca |
32257607 |
T |
|
| Q |
393 |
tcgtatttacactccactcataccgtttcttctctctc |
430 |
Q |
| |
|
|||||||||| |||||||||||| |||||||||||||| |
|
|
| T |
32257606 |
tcgtatttactctccactcatactgtttcttctctctc |
32257569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 314 - 430
Target Start/End: Complemental strand, 40907761 - 40907643
Alignment:
| Q |
314 |
tttttcaacttaaccattacttccttcaatccattcgtaattttggaa--aaaattgattcatcaacgtcaaattcatccatcgtatttacactccactc |
411 |
Q |
| |
|
||||||||| ||||||| |||||||||||||||| |||||| |||| ||||||||||||||||| ||||||||||||||||||||||| |||||||| |
|
|
| T |
40907761 |
tttttcaacccaaccatttattccttcaatccattcataatttgggaacaaaaattgattcatcaacatcaaattcatccatcgtatttactctccactc |
40907662 |
T |
|
| Q |
412 |
ataccgtttcttctctctc |
430 |
Q |
| |
|
||||| ||||||||||||| |
|
|
| T |
40907661 |
ataccatttcttctctctc |
40907643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 314 - 375
Target Start/End: Complemental strand, 32257798 - 32257735
Alignment:
| Q |
314 |
tttttcaacttaaccattacttccttcaatccattcgtaattttgga--aaaaattgattcatc |
375 |
Q |
| |
|
||||||||| ||||||| ||||||||||||||||| |||||| ||| ||||||||||||||| |
|
|
| T |
32257798 |
tttttcaacccaaccatttcttccttcaatccattcataatttgggaacaaaaattgattcatc |
32257735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 245; Significance: 1e-136; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 81 - 430
Target Start/End: Complemental strand, 17772270 - 17771921
Alignment:
| Q |
81 |
aaggtgaggcctagcctacctttacaaacacatggacaatttatccatgtaacttaacaataataaaaagcagccacgtatactcattgtatttgaaata |
180 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||| |||| ||| |||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
17772270 |
aaggtgaggcctagcctacctttacaaacacatgggtaatttacccatttaagttaacaataataaaaagcagccacgtatacccattgtatttgaaata |
17772171 |
T |
|
| Q |
181 |
cttattatttagttttataaattgtaaccatatatttttgttattttgcagatttacccaaacattaattaagttttatcttctcnnnnnnnttgtccag |
280 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| ||||||||||||| |||||||||||| ||||||||||||||||||||||| |||||||| |
|
|
| T |
17772170 |
tttattatttagttttataaattgtaaccacatacttttgttattttggagatttacccaagcattaattaagttttatcttctcaaaacaattgtccag |
17772071 |
T |
|
| Q |
281 |
actacattctgcttctgtgttttcatctttcaatttttcaacttaaccattacttccttcaatccattcgtaattttggaaaaaattgattcatcaacgt |
380 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||| ||| |||||||| |||||||||||| ||||||| | ||||||||||||||||||| | |
|
|
| T |
17772070 |
actatattctgcttctgtgttttcatctttcaatttttcaacctaatcattactttcttcaatccatttgtaatttggaaaaaaattgattcatcaacat |
17771971 |
T |
|
| Q |
381 |
caaattcatccatcgtatttacactccactcataccgtttcttctctctc |
430 |
Q |
| |
|
|||||||||||||| ||||||| ||||||||||||||||||||||||||| |
|
|
| T |
17771970 |
caaattcatccatcctatttactctccactcataccgtttcttctctctc |
17771921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 86 - 430
Target Start/End: Complemental strand, 1542217 - 1541873
Alignment:
| Q |
86 |
gaggcctagcctacctttacaaacacatggacaatttatccatgtaacttaacaataataaaaagcagccacgtatactcattgtatttgaaatacttat |
185 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||| |||||||| ||||||||||||||||| |||||||||||| |||||||||||||||| |||| |
|
|
| T |
1542217 |
gaggcctagcctacctttacaaacacatgggtaatttacccatgtaagttaacaataataaaaagtagccacgtatacccattgtatttgaaatatttat |
1542118 |
T |
|
| Q |
186 |
tatttagttttataaattgtaaccatatatttttgttattttgcagatttacccaaacattaattaagttttatcttctcnnnnnnnttgtccagactac |
285 |
Q |
| |
|
||||||||||||||||||||||||| ||| ||||||||||||| |||||||||||| ||||||||||||||||||||||| |||||||||||| |
|
|
| T |
1542117 |
tatttagttttataaattgtaaccacatacttttgttattttggagatttacccaagcattaattaagttttatcttctcaaaacaattgtccagactat |
1542018 |
T |
|
| Q |
286 |
attctgcttctgtgttttcatctttcaatttttcaacttaaccattacttccttcaatccattcgtaattttggaaaaaattgattcatcaacgtcaaat |
385 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||| |||||||| |||||||||||| |||| || ||||||||||||||||||||| |||||| |
|
|
| T |
1542017 |
attctgcttctgtgttttcatctttcaatttttcaacctaatcattactttcttcaatccatttgtaaattgggaaaaaattgattcatcaacatcaaat |
1541918 |
T |
|
| Q |
386 |
tcatccatcgtatttacactccactcataccgtttcttctctctc |
430 |
Q |
| |
|
||||||||| ||||||| ||||||||||||||||||||||||||| |
|
|
| T |
1541917 |
tcatccatcctatttactctccactcataccgtttcttctctctc |
1541873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 306 - 430
Target Start/End: Original strand, 1533809 - 1533933
Alignment:
| Q |
306 |
tctttcaatttttcaacttaaccattacttccttcaatccattcgtaattttggaaaaaattgattcatcaacgtcaaattcatccatcgtatttacact |
405 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| || |
|
|
| T |
1533809 |
tctttcaatttttcaacccaaccattacttccttcaatccattcgtaatttaggaaaaaattgattcatcaacatcaaattcatccatcgtatttactct |
1533908 |
T |
|
| Q |
406 |
ccactcataccgtttcttctctctc |
430 |
Q |
| |
|
||||||||||||||| ||||||||| |
|
|
| T |
1533909 |
ccactcataccgtttgttctctctc |
1533933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 306 - 430
Target Start/End: Original strand, 17752019 - 17752143
Alignment:
| Q |
306 |
tctttcaatttttcaacttaaccattacttccttcaatccattcgtaattttggaaaaaattgattcatcaacgtcaaattcatccatcgtatttacact |
405 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| || |
|
|
| T |
17752019 |
tctttcaatttttcaacccaaccattacttccttcaatccattcgtaatttaggaaaaaattgattcatcaacatcaaattcatccatcgtatttactct |
17752118 |
T |
|
| Q |
406 |
ccactcataccgtttcttctctctc |
430 |
Q |
| |
|
||||||||||||||| ||||||||| |
|
|
| T |
17752119 |
ccactcataccgtttgttctctctc |
17752143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007 (Bit Score: 189; Significance: 1e-102; HSPs: 3)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 173 - 430
Target Start/End: Original strand, 278191 - 278448
Alignment:
| Q |
173 |
ttgaaatacttattatttagttttataaattgtaaccatatatttttgttattttgcagatttacccaaacattaattaagttttatcttctcnnnnnnn |
272 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||| |||||||||||| ||||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
278191 |
ttgaaatacttattatttagttatataaattgtaaccatatacttttgttattttacagatttacccaagcattaattaagctttatcttctcaaaaaat |
278290 |
T |
|
| Q |
273 |
ttgtccagactacattctgcttctgtgttttcatctttcaatttttcaacttaaccattacttccttcaatccattcgtaattttggaaaaaattgattc |
372 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| | ||||||||||||| |
|
|
| T |
278291 |
ttgtccagactacattctgcttctgcgttttcatctttcaatttttcaacctaactattacttccttcaatccattcgtaatttggaaaaaaattgattc |
278390 |
T |
|
| Q |
373 |
atcaacgtcaaattcatccatcgtatttacactccactcataccgtttcttctctctc |
430 |
Q |
| |
|
|||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
278391 |
atcaacatcaaattcatccatcgtatttactctccactcataccgtttcttctctctc |
278448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007; HSP #2
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 83 - 181
Target Start/End: Original strand, 268203 - 268302
Alignment:
| Q |
83 |
ggtgaggcctagcctacctttacaaacacatggacaatttatcc-atgtaacttaacaataataaaaagcagccacgtatactcattgtatttgaaatac |
181 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
268203 |
ggtgaggcctagcctacctttacaaacacatgggcaatttaccccatgtaacttaacaataataaaaagcagccacgtatactcattgtatttgaaatac |
268302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 83 - 181
Target Start/End: Original strand, 277905 - 278004
Alignment:
| Q |
83 |
ggtgaggcctagcctacctttacaaacacatggacaatttatccat-gtaacttaacaataataaaaagcagccacgtatactcattgtatttgaaatac |
181 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| ||||||| || | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
277905 |
ggtgaggcctagcctacctttccaaacacatgggcaatttaccccttgtaacttaacaataataaaaagcagccacgtatactcattgtatttgaaatac |
278004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 103 - 198
Target Start/End: Complemental strand, 25767003 - 25766909
Alignment:
| Q |
103 |
tacaaacacatggacaatttatccatgtaacttaacaataataaaaagcagccacgtatactc-attgtatttgaaatacttattatttagttttat |
198 |
Q |
| |
|
||||||||||||| |||| | ||||||||| ||||| |||||||||||||||| | ||||| ||||||||||||||||| |||||||| |||||| |
|
|
| T |
25767003 |
tacaaacacatgggcaat--acccatgtaacctaacaccaataaaaagcagccacatgtactccattgtatttgaaatactcattatttaattttat |
25766909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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