View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2252_low_19 (Length: 273)
Name: NF2252_low_19
Description: NF2252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2252_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 156; Significance: 6e-83; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 19 - 174
Target Start/End: Original strand, 25929381 - 25929536
Alignment:
| Q |
19 |
gaatcggcatgaacgagtcggtggtagcgagttaggaagagaaaaatgaaagagatgaaggtaatggtgatggaaaagtgacccatgctgtgaggggttg |
118 |
Q |
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| T |
25929381 |
gaatcggcatgaacgagtcggtggtagcgagttaggaagagaaaaatgaaagagatgaaggtaatggtgatggaaaagtgacccatgctgtgaggggttg |
25929480 |
T |
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| Q |
119 |
taagaacagagcgcgtgtttttatagagatatgtgcgtctgttttagatttggata |
174 |
Q |
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| T |
25929481 |
taagaacagagcgcgtgtttttatagagatatgtgcgtctgttttagatttggata |
25929536 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 21 - 115
Target Start/End: Original strand, 25912919 - 25913013
Alignment:
| Q |
21 |
atcggcatgaacgagtcggtggtagcgagttaggaagagaaaaatgaaagagatgaaggtaatggtgatggaaaagtgacccatgctgtgagggg |
115 |
Q |
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| T |
25912919 |
atcggcatgaacgagttggtggtagcgagttaggaagagtaaaatgaaagagatgaaagttatggtgatggaaaagtcgcccatgctttgagggg |
25913013 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 19 - 114
Target Start/End: Original strand, 25888896 - 25888982
Alignment:
| Q |
19 |
gaatcggcatgaacgagtcggtggtagcgagttaggaagagaaaaatgaaagagatgaaggtaatggtgatggaaaagtgacccatgctgtgaggg |
114 |
Q |
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| T |
25888896 |
gaatcggcatgaacgagtcggtggtagcgagttaagaagagaaaaatgaaa---------gtaatggtgatggaaaagtgacccatgctgtgaggg |
25888982 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 19 - 114
Target Start/End: Complemental strand, 25956282 - 25956187
Alignment:
| Q |
19 |
gaatcggcatgaacgagtcggtggtagcgagttaggaagagaaaaatgaaagagatgaaggtaatggtgatggaaaagtgacccatgctgtgaggg |
114 |
Q |
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| T |
25956282 |
gaatcggcatgaacgagttggttgtagcgagttaggaagagaaaaatgaaagagatgaaagtaatggtgataggtaagtaacccatgttgagaggg |
25956187 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 190 - 239
Target Start/End: Original strand, 9985109 - 9985158
Alignment:
| Q |
190 |
tttgttttttaaatcaataaattaacgatgatttttgtaaaataaaatgt |
239 |
Q |
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| T |
9985109 |
tttgttttttaaatcaataaattaacgacaattttcataaaataaaatgt |
9985158 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 192 - 235
Target Start/End: Original strand, 44971892 - 44971935
Alignment:
| Q |
192 |
tgttttttaaatcaataaattaacgatgatttttgtaaaataaa |
235 |
Q |
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| T |
44971892 |
tgttttttaaatcaataaattaacgattatttttataaattaaa |
44971935 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 235
Target Start/End: Complemental strand, 46919879 - 46919839
Alignment:
| Q |
195 |
tttttaaatcaataaattaacgatgatttttgtaaaataaa |
235 |
Q |
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| T |
46919879 |
tttttaaatcaataaattaacgattatttttatgaaataaa |
46919839 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 225
Target Start/End: Original strand, 40051258 - 40051294
Alignment:
| Q |
189 |
atttgttttttaaatcaataaattaacgatgattttt |
225 |
Q |
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| T |
40051258 |
atttgttttttaaattaataaattaacgattattttt |
40051294 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 191 - 259
Target Start/End: Original strand, 29852234 - 29852302
Alignment:
| Q |
191 |
ttgttttttaaatcaataaattaacgatgatttttgtaaaataaaatgtaagttgtccacttttatatt |
259 |
Q |
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||||||| ||||||||||||||||| || |||||| | ||||||| || | ||||| ||||||||||| |
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| T |
29852234 |
ttgttttctaaatcaataaattaacaatcatttttatgaaataaatagttatttgtcgacttttatatt |
29852302 |
T |
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