View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2252_low_2 (Length: 531)

Name: NF2252_low_2
Description: NF2252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2252_low_2
NF2252_low_2
[»] chr2 (1 HSPs)
chr2 (13-515)||(38891683-38892190)
[»] chr7 (3 HSPs)
chr7 (387-471)||(31795644-31795729)
chr7 (262-299)||(29392515-29392552)
chr7 (286-362)||(22189749-22189825)
[»] chr5 (2 HSPs)
chr5 (236-422)||(34981081-34981268)
chr5 (255-305)||(16388148-16388197)
[»] chr8 (1 HSPs)
chr8 (275-361)||(2615158-2615244)
[»] chr1 (4 HSPs)
chr1 (403-493)||(12380575-12380664)
chr1 (403-493)||(12384642-12384731)
chr1 (444-493)||(12363599-12363648)
chr1 (272-361)||(21932222-21932311)


Alignment Details
Target: chr2 (Bit Score: 455; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 13 - 515
Target Start/End: Original strand, 38891683 - 38892190
Alignment:
Q  13 caaaggtacaagagaaaagaaaagaaaaagttccatagaagtttaatgtgtttttggctagtgtgtcatataacaaaaaattatagtccatatatata-- 110  Q
    ||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  38891683 caaaggtacaagagaaaagaaaagaaaaaattccatacaagtttaatgtgtttttggctagtgtgtcatataacaaaaaattatagtccatatatatata 38891782  T
Q  111 gtcccaaccttccttttcctttataatac---gtaatgtgagacttcttcaacatatatttttcaactaataccaacaatcttcatctccattgaaaatg 207  Q
    |||||||||| ||||||||||||||||||   |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  38891783 gtcccaacctcccttttcctttataatactaggtaatgtgagacttcttcaacatatatttttcaactaacaccaacaatcttcatctccattgaaaatg 38891882  T
Q  208 gtacatatactgtcattgccgtcaccggcaatcatcattcaaaaaactatcataatccaccataaagagtatattttacttgaagttaaaccactccatg 307  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38891883 gtacatatattgtcattgccgtcaccggcaatcatcattcaaaaaactatcataatccaccataaagagtatattttacttgaagttaaaccactccatg 38891982  T
Q  308 aactttcacatgttgaaaattagtttgaaaacttatgatgcagcttccatgttgattgaaaattgttcaattgccgaagtaatctcacacacactttgca 407  Q
    ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38891983 aactttcacatgtcgaaaattagtttgaaaacttatggtgcagcttccatgttgattgaaaattgttcaattgccgaagtaatctcacacacactttgca 38892082  T
Q  408 tcaatttcaatcaatgtccatgtactaagaaacaccttgtgtaatattgattgtatcaacacattgttaacttgaattttccacaagccaaaaaatgatt 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38892083 tcaatttcaatcaatgtccatgtactaagaaacaccttgtgtaatattgattgtatcaacacattgttaacttgaattttccacaagccaaaaaatgatt 38892182  T
Q  508 cttccatc 515  Q
    ||||||||    
T  38892183 cttccatc 38892190  T

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Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 387 - 471
Target Start/End: Original strand, 31795644 - 31795729
Alignment:
Q  387 taatctcaca-cacactttgcatcaatttcaatcaatgtccatgtactaagaaacaccttgtgtaatattgattgtatcaacacat 471  Q
    |||||||||| ||||||||| |||||| |||| |||||  | ||||||||  ||||||||||||||| ||||||||||||||||||    
T  31795644 taatctcacaacacactttgtatcaatgtcaaccaatgcgcgtgtactaatcaacaccttgtgtaatcttgattgtatcaacacat 31795729  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 262 - 299
Target Start/End: Complemental strand, 29392552 - 29392515
Alignment:
Q  262 atccaccataaagagtatattttacttgaagttaaacc 299  Q
    ||||||||||||| ||||| ||||||||||||||||||    
T  29392552 atccaccataaagggtatactttacttgaagttaaacc 29392515  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 286 - 362
Target Start/End: Original strand, 22189749 - 22189825
Alignment:
Q  286 cttgaagttaaaccactccatgaactttcacatgttgaaaattagtttgaaaacttatgatgcagcttccatgttga 362  Q
    |||| |||||||||||| || ||| |||||||| | |||||| || ||||||||||| |  ||| ||||||||||||    
T  22189749 cttgtagttaaaccacttcaagaattttcacatatcgaaaatgaggttgaaaacttaaggagcaacttccatgttga 22189825  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 236 - 422
Target Start/End: Original strand, 34981081 - 34981268
Alignment:
Q  236 caatcatcattcaaaa-aactatcataatccaccataaagagtatattttacttgaagttaaaccactccatgaactttcacatgttgaaaattagtttg 334  Q
    |||||||  ||||||| |||||||||| |||| |||||| | |||| || ||| ||| |||||||||||||  || ||||||||||  ||||| |   |     
T  34981081 caatcatagttcaaaagaactatcatactccatcataaaaaatatacttcactcgaatttaaaccactccaataattttcacatgtcaaaaatcatgcta 34981180  T
Q  335 aaaacttatgatgcagcttccatgttgattgaaaattgttcaattgccgaagtaatctcacacacactttgcatcaatttcaatcaat 422  Q
    |||||||||  |||| ||||||| ||| ||||||| | |||||   | ||  |||||||| ||||||||||||||||| |||||||||    
T  34981181 aaaacttatcgtgcaacttccatattggttgaaaactcttcaaccactgacataatctcaaacacactttgcatcaatgtcaatcaat 34981268  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 255 - 305
Target Start/End: Complemental strand, 16388197 - 16388148
Alignment:
Q  255 tatcataatccaccataaagagtatattttacttgaagttaaaccactcca 305  Q
    ||||||| ||||||||||||||||||  | |||||||||||||||||||||    
T  16388197 tatcatactccaccataaagagtata-atcacttgaagttaaaccactcca 16388148  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 275 - 361
Target Start/End: Original strand, 2615158 - 2615244
Alignment:
Q  275 agtatattttacttgaagttaaaccactccatgaactttcacatgttgaaaattagtttgaaaacttatgatgcagcttccatgttg 361  Q
    |||||| |||||||||||||||| ||||||| ||| ||| |||||||||||||  |  ||||||||||| ||||| ||| |||||||    
T  2615158 agtatactttacttgaagttaaaacactccaagaatttttacatgttgaaaatccggctgaaaacttataatgcaactttcatgttg 2615244  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 403 - 493
Target Start/End: Complemental strand, 12380664 - 12380575
Alignment:
Q  403 ttgcatcaatttcaatcaatgtccatgtactaagaaacaccttgtgtaatattgattgtatcaacacattgttaacttgaattttccacaa 493  Q
    |||||||||| ||||||||||  ||| ||||||  || |  ||||||||| |||| |||||||||||||| || ||||||||||| |||||    
T  12380664 ttgcatcaatgtcaatcaatgctcatatactaatcaatat-ttgtgtaatcttgaatgtatcaacacattttttacttgaatttttcacaa 12380575  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 403 - 493
Target Start/End: Complemental strand, 12384731 - 12384642
Alignment:
Q  403 ttgcatcaatttcaatcaatgtccatgtactaagaaacaccttgtgtaatattgattgtatcaacacattgttaacttgaattttccacaa 493  Q
    |||||||||| ||||||||||  ||| ||||||  || |  ||||||||| |||| |||||||||||||| || ||||||||||| |||||    
T  12384731 ttgcatcaatgtcaatcaatgctcatatactaatcaatat-ttgtgtaatcttgaatgtatcaacacattttttacttgaatttttcacaa 12384642  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 444 - 493
Target Start/End: Complemental strand, 12363648 - 12363599
Alignment:
Q  444 ttgtgtaatattgattgtatcaacacattgttaacttgaattttccacaa 493  Q
    ||||||||| |||| |||||||||||||| || ||||||||||| |||||    
T  12363648 ttgtgtaatcttgaatgtatcaacacattttttacttgaatttttcacaa 12363599  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 272 - 361
Target Start/End: Original strand, 21932222 - 21932311
Alignment:
Q  272 aagagtatattttacttgaagttaaaccactccatgaactttcacatgttgaaaattagtttgaaaacttatgatgcagcttccatgttg 361  Q
    ||||||||| || |||||||||| ||| | | || |||||||||||||| |||| | |  ||||||||||||  |||| |||||||||||    
T  21932222 aagagtatacttcacttgaagttgaactatttcaagaactttcacatgtcgaaattcaagttgaaaacttattgtgcaacttccatgttg 21932311  T

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