View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2252_low_25 (Length: 238)
Name: NF2252_low_25
Description: NF2252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2252_low_25 |
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Alignment Details
Target: chr6 (Bit Score: 107; Significance: 9e-54; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 76 - 218
Target Start/End: Original strand, 32867198 - 32867341
Alignment:
| Q |
76 |
ttttttgttgagaaaaggactaaacttgtgatgctaaaagaactggactaatttgcgtnnnnnnnc-atcttatggactaagatgttacataagttggtt |
174 |
Q |
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| T |
32867198 |
ttttttgttgagaaaaggactaaacttgtgatgctaaaagaactggactaatttgtgtaaaaaaaatatcttatggactaagatgttacataagttggtt |
32867297 |
T |
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| Q |
175 |
catttagtatttaaatttgcaaaatagaaatttagtccataata |
218 |
Q |
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| T |
32867298 |
catttagtatttaaatttgcaaaatagaaatttagtccataata |
32867341 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 164 - 211
Target Start/End: Complemental strand, 32873624 - 32873576
Alignment:
| Q |
164 |
ataagttggttcatttagtattt-aaatttgcaaaatagaaatttagtc |
211 |
Q |
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| T |
32873624 |
ataagttggttcatttagtcttttaaatttgcaaaatagaaatttagtc |
32873576 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 64 - 115
Target Start/End: Original strand, 32873491 - 32873542
Alignment:
| Q |
64 |
tttttgttatcattttttgttgagaaaaggactaaacttgtgatgctaaaag |
115 |
Q |
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| T |
32873491 |
tttttgttgtcattctttgtcgagaaaaggactaaatttgtgatgctaaaag |
32873542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 184 - 216
Target Start/End: Complemental strand, 32875641 - 32875609
Alignment:
| Q |
184 |
tttaaatttgcaaaatagaaatttagtccataa |
216 |
Q |
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| T |
32875641 |
tttaaatttgcaaaatagaaatttagtccataa |
32875609 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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